| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,243,825 | C→T | A235T (GCC→ACC) | ycgR ← | flagellar brake protein YcgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,243,825 | 0 | C | T | 98.2% | 156.4 / NA | 54 | A235T (GCC→ACC) | ycgR | flagellar brake protein YcgR |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (24/29); total (25/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGATCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATG > NC_000913/1243578‑1244070 | aGATCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTtc < 2:360065/251‑1 (MQ=255) aTCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTtctc > 1:158952/1‑251 (MQ=255) gCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCgagagaga < 1:126608/250‑1 (MQ=255) ggtggtGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTg < 1:131114/251‑1 (MQ=255) gtgtCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATATTCCGCTGTAAt < 2:51132/251‑1 (MQ=255) cATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGcc > 1:473782/1‑251 (MQ=255) gCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGCAAA‑GGCAGTCAGCAAAATCAACGATTTGGATGCTGACGAGATCCTCGAACACGTAAGGGGAAATTACCCCTCGCCGCAGGCTCCCCGCTAAATCCACAAACTTGAGCCGGCCATGGAC‑CGCAAGGAAATCAGTCGCCCTATTTGTCCGCTTTTTTCCCGGCTTCTCGCTCGGGGGGGTAAAAAATTCGCTGGAATTGCCGCTccc > 2:500672/1‑250 (MQ=255) tAACGGGGCAGGTGCGCTGCTACGGAATTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGCTGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCCGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGGAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCAc > 2:417896/1‑251 (MQ=255) aaCGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGCAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAACGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACACACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCAcc > 2:258217/1‑251 (MQ=255) aaCGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCAcc > 1:4219/1‑251 (MQ=255) gCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCggg < 1:531681/251‑1 (MQ=255) aGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCGCCGTCGGGCt < 2:57801/251‑1 (MQ=255) aGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCt > 2:516862/1‑251 (MQ=255) gctACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCT‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTaa < 2:27065/250‑1 (MQ=255) ctACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTa > 2:392873/1‑248 (MQ=255) gTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGCTGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGAG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTACTTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTc > 2:103906/1‑249 (MQ=255) gAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAgt > 1:131610/1‑251 (MQ=255) aaaaaGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAgtg > 2:375094/1‑251 (MQ=255) gCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATg < 2:310627/251‑1 (MQ=255) cGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATgg > 2:150360/1‑251 (MQ=255) cAGCAAAATCAACGAGTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTGGAGCAGGCACTTGACGCG‑ATGTAAATCAGTCGCGCTCTTTGTCCGCTTTTTCCCGGGTGTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACTTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTCATGGTTTc < 2:283368/251‑1 (MQ=255) cAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCAtt > 1:550525/1‑251 (MQ=255) aaaaTCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGGGGGGATGGATGCATTc > 2:358746/1‑251 (MQ=255) aaCGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACAGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTACCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGATCCACCGTCGGGCTGACGTTAAGAAAACGGAAGATCAGACGGGGAGGGGAGATGGATTCATTCTTGccc > 1:427516/1‑250 (MQ=255) ttGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCatcaat < 1:245919/250‑1 (MQ=255) tGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCTCCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCatcaatc < 1:258217/250‑1 (MQ=255) gcagACGAGTTCCTCGAACACGGAGCGCGAAATCACCCTGCGCCGCAGGCACCGCGCTATATCGTCAAACTTTAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATGGCCGCTCGACCTTCGGGCGGACGTTAAGAATACGTAAGCTCAGACGGGGAGTGGTGATGGTGGCATTCTTTCCATCAATCACTTTg < 2:67409/248‑1 (MQ=255) gCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACttt < 1:177943/250‑1 (MQ=255) cGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATgg < 1:620167/250‑1 (MQ=255) cGAACACGCAACGCGAAATCACCCTGAGCAGCAGGCACCGAGCTATATCCACAACCTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGAGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGCGAGCGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGGGTGGTGATGGTTTCATTCTTGCCCTCCATCACTTTGCGCTCGCTGATga > 2:598202/1‑249 (MQ=255) gAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATgg > 1:144267/1‑249 (MQ=255) aaCACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATgg > 1:121987/1‑248 (MQ=255) aGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTg < 1:84031/251‑1 (MQ=255) ggcgcCGCAGGCGCCGCGCTATATCTGCAAACTTGAGCAGGCACTGGACGCG‑ATGTAAAGCAGGCGCGCACGTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGGTGTAATTGCCGCTCCACCGTCGTGCTGACGTTAAGAAAACGGAAGCTGAGACGGGGAGTGGTGATGGTTTCATTCTTGGCATCGATCACTTTGCGCGCGCTGATGGAGATTAACTGGGCGTCAAAGTGaaa < 1:323773/250‑1 (MQ=255) ccgcAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAAGCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGGTTCATTCGTGCCATCAATGACTTTGCGCTCGCTGATGGAGATTAACGGGGCGGCAAAGGGaaaatca < 2:385941/251‑4 (MQ=255) gcTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCa < 1:150360/251‑1 (MQ=255) atatCTACAAACTTGAGCAGGCACTGGACGCG‑ATGGAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCAt < 1:417896/249‑1 (MQ=255) tatCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGtt > 2:461413/1‑251 (MQ=255) atCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTg > 1:344057/1‑251 (MQ=255) gtACAAACTTGAGCAGGCACGGGACGGG‑ATGTAAAGCAGTCGCGCACTTTGTCAGCTTTTTCCCGGGTTTCTCTCTCGAGAGAGAAAATAATCCGCTGTAAGGGCCTCTGCACCGTCTGGCTAACGTTAAGAAAACGGAAGCTCAGACGATGCGTGGTGATGGTTTCATTCTTGCCATCAATCGCTTTGCTCTCGCTGATGGAGAGTAAGGGGGCGTCAAAGTAAAAAATTCCGCTTTGCCCTATGTTGAc < 2:374705/250‑1 (MQ=255) aCAAACTTGAGCTGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGa < 2:339442/248‑1 (MQ=255) aCAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACt < 1:521334/250‑1 (MQ=255) cAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTc > 2:475180/1‑251 (MQ=255) tGAGCTGGCACTGGACGCG‑ATGTAACTCAGCAGCGAACTATGTCCGCTTTTTCACGGGTTTCTCGATAGAGAGAGAAAATAATCCGATGTAATTGCCGCTCCCCCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGGGGTGATGGTTTCATTCTTGCCATAAATAACTTTGCGCTGGCTGATGGGGATTAATTGTGCGTAAAAGTGACAAACACCCAATTGCCCCCTGTTGACTTCAAtatg > 2:356656/1‑248 (MQ=255) aGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTg > 2:278399/1‑249 (MQ=255) ggACGCG‑ATGGAAAGCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCGCCACCGTCGTGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTCGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCa < 2:246678/250‑1 (MQ=255) g‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACGTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCcttc < 2:223409/251‑1 (MQ=255) aaaTCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGt < 1:540758/250‑1 (MQ=255) aaaTCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGt > 1:229542/1‑250 (MQ=255) cgcgCACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCa < 1:597641/251‑1 (MQ=255) gcgcACTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCTCCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAg < 2:467985/251‑1 (MQ=255) ccTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCtt < 1:23588/250‑1 (MQ=255) aCTTTGTCCGCTTTTTCCCGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCtt < 1:530641/251‑1 (MQ=255) ccGGGTTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATg > 1:419515/1‑251 (MQ=255) | AGATCCGAAGGTACTGCAATATGCGCTGGTGGTGTCATACGCTAACGGGGCAGGTGCGCTGCTACGGACTTTCTCGTCAGATCGGAAAAAGGCGATCAGCAAAATCAACGATTTGGATGCTGACGAGTTCCTCGAACACGTAGCGCGAAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCG‑ATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAGGCTTTGCTGTTTCCAGTAATG > NC_000913/1243578‑1244070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |