Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,158,814 | 0 | G | A | 77.5% | 125.1 / 26.2 | 76 | T143T (ACG→ACA) | mdtC | multidrug efflux pump RND permease subunit MdtC |
Reads supporting (aligned to +/- strand): ref base G (5/11); new base A (29/26); total (36/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.62e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGCCACGCCGCTGGAGCGCTCACTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTC > NC_000913/2158574‑2159058 | tGCCACGCCGCTGGAGCGTGCTCTTTGGCGCATGGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATCTTGCAGTTTGATTTTGGCCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGAGGCCCCGCCGCCCGACCT‑ATCGCAAAGCTAGCGCGTCGGAGGCGCCAATTATGATCCTTACGCttccgtcc < 2:586029/250‑8 (MQ=255) gCCACGCCGCTGGAGCGCTCACTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCg < 1:580872/250‑1 (MQ=255) cACGCCGCTGGAGTGCTCACTTGTGCGCATTGCCGG‑AGGCAGTGACATGACCTCCAGCAGGTCGCTCGGCAGTACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGTGGCGAACCACGCTGCACAAACTTTGCTGCCCAGGGGGATGTCCAGATGCCCGACCT‑ATCGCAAAGCGAAACCGTCGGCTGCGCCAATTATGATCCTCACGCTGACggtcgatt < 2:464765/251‑8 (MQ=255) cACGCCGCTGGAGCGCTCACTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCATCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCGCAGTGGGATGCCCAGCCGCCCGACCT‑AGCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACGGTCGTCCGATa < 2:270944/251‑1 (MQ=255) ggAGCGCTCGCTAGGGCGAATTGCCGGCAG‑CAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGAACGCGTATTATTTTGCAGATTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGATGCACAACGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTAGGATGCTCCCATTATGATCCTCACCCTGCCGTCCGATACTTCTTCGc > 2:554222/1‑251 (MQ=255) aGCGCTCACTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGCCCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACAATGACGTCCGATACTTATTCGc > 2:273160/1‑249 (MQ=255) tCACTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTg > 1:274607/1‑250 (MQ=255) cTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAAACCGTCGGATGCGCCAATTATGATCCTCACGCTGCCGTCCGATACTTATTCGCAGGGTGCACt > 2:212194/1‑251 (MQ=255) gcgcATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACg < 1:93930/251‑1 (MQ=255) gcATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGAt < 1:518185/251‑1 (MQ=255) tGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCg > 1:471884/1‑251 (MQ=255) cGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATATTGCAGTATGATTTTGACCGGGATAGCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑AGCGCAAAGCGAATCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCt < 1:615460/251‑1 (MQ=255) gg‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTc > 1:78668/1‑251 (MQ=255) cAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACg < 1:12346/250‑1 (MQ=255) gAAAGGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGGCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCt < 2:330747/251‑1 (MQ=255) aTGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGc > 2:339068/1‑251 (MQ=255) gACCTCCAGCATTTCGCTCGTCAGTACGGGTATTATTTTGCAGTTTTATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTTCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCGCACACTGACGTCCGATACTTATTCGCAGTGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTc < 2:312714/251‑1 (MQ=255) agcagTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGGCCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGAt < 1:504386/251‑1 (MQ=255) gcagTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACCCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGAtt > 2:500422/1‑251 (MQ=255) agTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTc > 1:512715/1‑251 (MQ=255) cGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCa > 1:378169/1‑250 (MQ=255) gCTCGGCAGCACGCGTATTATTTTGCAGTTTGATGTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCaaa < 2:43522/251‑1 (MQ=255) ggCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGCTGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCCGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCg > 1:164793/1‑250 (MQ=255) gcagcaCGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGAc < 1:273160/251‑1 (MQ=255) cagcaCGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACg < 2:143864/251‑1 (MQ=255) agcaCGCGTATTATTTTGCAGTTTGGTTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCGGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACGGTACGATTTCGCCTCGACGCAGCTGGTTCCGACGATTTCACAAAGCGACgg < 2:385448/251‑1 (MQ=255) attTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCCAATCGACGGTGTTGGTgatgt > 1:275155/1‑251 (MQ=255) attTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTgatg < 2:165495/250‑1 (MQ=255) tGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTgatgtcga < 1:100953/250‑1 (MQ=255) aGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTgatgtcgatgtc > 1:72693/1‑251 (MQ=255) ttttGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGc > 2:169359/1‑250 (MQ=255) gACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTc < 1:174247/251‑1 (MQ=255) aCCGGGATATCAACGGCGCAGCGCGTGATGTGGAGGCGGCGATCAACGCTGCACAAAGTTTGCTGACCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATGTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAAGCGACGGTGTTGGTGATTTCGATGTCGGAGGCAGCTCa < 2:142864/251‑1 (MQ=255) gggATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTg > 1:268940/1‑251 (MQ=255) cAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCAAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGGGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCccgccg > 2:506628/1‑251 (MQ=255) aaCGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGt > 2:521960/1‑251 (MQ=255) aaCGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGt > 2:158065/1‑251 (MQ=255) aCGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGt > 2:488561/1‑250 (MQ=255) cGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCACAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTAc > 1:406089/1‑251 (MQ=255) cgcggcgcGTGATGTTCACGCGGCGATCAACGCTGCACGAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAGGCGAACCCGTCGGATGCGCCAGTTATGATCCTCACACGGACGTCCGAGACTTAGGCGCAGGGTGAGCGGTACGATTTCGCCTGGACGCAGCTGGCTCCGACGATTGCGCAAATCGACGGTGTTGGGGATGTGGATGTCGGAGGCAGCTAACTGCCCGCCGTAcgcg < 2:78178/247‑1 (MQ=255) cgcAGCGCGTGATGTGCAGGCGGCGATGAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCCGCCGCCCGACCT‑ATCCCAATGCGACCCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGCTACTTATTCGCAGGGTGAACTGTATGATTTCGCCTCGACGCAGCTGTATCCGACGATTTCGCAACTCGACGGTGTTGGTGATGTTGGTGTCGGAGCCAGCGCACTGcacaccggacccc > 2:74483/1‑239 (MQ=255) cgcAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCCAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTAcgcg > 1:283169/1‑251 (MQ=255) gcAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGACAGCTCACTGCCCGCCGTACGCGt > 1:157402/1‑251 (MQ=255) gcgcgagctgtgCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCgg > 2:622369/9‑251 (MQ=255) ggcttGATGTGCGGCCGTCGATCAACGCGGCACAAAGTTTTCTGCCCAGTGGGTTGCCCAGCCGCCCGCCCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACCCTGACGTCCGATACTTATTCGCAGGGTTAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGTGGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCggg < 2:376355/247‑1 (MQ=255) gttGATGTGCAGGCGGCGAACTGCGATGCAAAAATTTGGCGTCCCAGTGGGGTGCCCAGCTGCCCG‑CCTGACCGCAAAGCGACCCCTTCGGTTGCACTAATTATGACCCTCCCGCGGTCGTCCGATACTTGTTCGCAGGGTGAACTGTACGTGTTCGCCTCGTCGCTGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGTCAGTTCACTTCCTGCCGTACTCGTCGTGCt < 2:444517/249‑1 (MQ=255) tGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTg > 2:317791/1‑250 (MQ=255) gaccttCAACGCTGCACAAAGTTTGCTGCCCAGGGGGATGCCCAGCCGCCCGACCT‑ACCGCAAAGCAAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATGGCGCAAATCGACGGTGTTGTTGAGGTCGATGTCGGAGGCAGCCCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGgcgc < 2:382914/246‑1 (MQ=255) gcgATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCt > 1:272411/1‑251 (MQ=255) gATCAACGCTGCACAAAGTTTGCTGACCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGGCGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGTATCCGCCGGCGCTGt > 2:457824/1‑251 (MQ=255) aTCAACGCTGCACAAATTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGCCCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTAGGATCCGCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATTTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGtt < 1:1503/251‑1 (MQ=255) aTCAACGCTGCACAAAGTTTGCTGCCCAGTGGGAGGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGAGCCGCACACTGACGTCCGATTCTTATCCGCAGTGTGAACTGTGCGATTGCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAATTCGACGTTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGtt < 1:554104/251‑1 (MQ=255) tCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGgcgc > 1:382914/1‑246 (MQ=255) cAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGACCCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGttt < 1:559522/250‑1 (MQ=255) cAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGTTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTa < 1:599494/251‑1 (MQ=255) cAACGCTGCACAAAGTTTGCGGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACGGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTTTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTa < 2:78668/251‑1 (MQ=255) gCACAAAGTTTGCTGCCCGGTGGGATGCCCAGCCTCCCGCCCT‑ATCGCAAAGCGAACCCGTGGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGGGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAAGCCGCAGGCGCTGTTTAATCAggg < 2:460416/251‑1 (MQ=255) aaaaaGTTTGCGGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGACCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCg < 1:490347/249‑1 (MQ=255) gctgcCAAGTGGGAGGCCCAGCCGCCCGACCT‑ACCGCAAAGCGACCCCGCCGGATGCGCCAATTAGGATCCTCACACTGACGGCCGATACTTATTCGCAGGGTGAACTGTCCGATTTCGCCTCGACGCGGCGGGCTCCGACGATGTCGCAAATCGACGGGGTTGGTGATGTGGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTgg < 2:231102/251‑1 (MQ=255) cAGTGGGATGCCCAGCCGCCCGTCCT‑TACGCAAAGCGAACCCGTCGGATGCCCCAATTAAGACCCCCACGCTGTCGTCCGATTCTTATTCGCAGGGTGACCTGTTCGATTTCGCCTCGACGCAGCTGGCCCCGACGTTTTCGCAAATCGACGGGGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGacgacg < 2:273782/251‑1 (MQ=255) gTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGacgacga > 2:115041/1‑249 (MQ=255) gTGGGACGCCCAGCCGCCCGACCT‑ATCGCAAAGCGACCCCGCCGGATGCTCCAATTATGGTCCTACCCCTGACGTCCGATCCTTATTCGCAGGGTGAACTGGACGATTTCGCGTCGACGCTGCTGGCGCCGACGATTTAGCAAATCGCCGGTGTGGGGGAGGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTa < 2:173450/251‑1 (MQ=255) ggttcccAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGAGCCTCACACTGACGTCCTATACTTACTCGCAGGGTTAACTTTGCGATTTCGCCGCGACGCATCTGGCGCCGACTATTGCGCAAATCGACGGTGTTGGTGATGTCGAGGTCGTAGGCAGCTCACGGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCa < 1:374320/247‑1 (MQ=255) ccgcccgcCCT‑ATCGCAACACGAACCCGGCGGTTGCGCCAATTATTATCCCCACTCTGACGTCCGATACTTATTCCCTGGGTGAACTTGACGATTCCGCCTCGACGCAGCTGGCTCCGAGGATTTCGCATATCGACGGTGTTGTTGATGGCGATGTCGGAGGCAGCTCTCTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCGGGACGACGTACGCACCGCCGTCa < 2:406089/251‑1 (MQ=255) cgccCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTc > 1:209499/1‑249 (MQ=255) gACCT‑ACCGCAAAGCGAACCCGTCGGAGGCGCCAATTATGTCCCTCCCGCTGCCGTCCGATCCTTATTCGCAGGGGGACCTGTACGATTTCGCCCCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATg < 2:195085/251‑1 (MQ=255) cGCAACGCGACCCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGt > 2:290677/1‑251 (MQ=255) cGAACCCGTCGAATGCGCAAATTATGATCCTCACACGGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGTTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGACGCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCATCAGCAATGCCAACGTGCGTaaa < 1:21641/251‑1 (MQ=255) gggATGCGCCAATTAGGATCCTCACACGGACGTCCGATACTTATTCGCAGGGGGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGgc < 1:53310/250‑1 (MQ=255) cgcCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTg > 1:605436/1‑251 (MQ=255) gcCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTgg > 1:432079/1‑251 (MQ=255) gcCAATTATGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTgg > 2:84316/1‑251 (MQ=255) aTGATCCTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATgg > 1:175318/1‑251 (MQ=255) gatccgctcGCTGACGTCCGTTATTTATTCGCAGGGTGAACTGTACTATTTCGCCTCGACGCAGCTGTCTCCGACGATTTCGAAAATCGACGGTGTTGGTGATTTCGATGTCGGAGGCAGCTCACGGCCTGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCa < 1:221685/243‑1 (MQ=255) cccTCACACTGCCGTCGGGTAGTTATCCGCAGGTTGACCTTTACGATTTCGCGCCGACGCATTTGTCTCCGACGATTTCGCAAATGGACGGTGTTTGGGAGGTCGATGTCGGAGGAAGCTCACTGCCCGCCGATCGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGTTGGACGACGTACGCACCTCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGAGCGCTGGAAGATggttct < 2:407335/250‑5 (MQ=255) cTCACACTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTc > 1:88578/1‑250 (MQ=255) | TGCCACGCCGCTGGAGCGCTCACTTGGGCGCATTGCCGG‑AGTCAGTGAAATGACCTCCAGCAGTTCGCTCGGCAGCACGCGTATTATTTTGCAGTTTGATTTTGACCGGGATATCAACGGCGCAGCGCGTGATGTGCAGGCGGCGATCAACGCTGCACAAAGTTTGCTGCCCAGTGGGATGCCCAGCCGCCCGACCT‑ATCGCAAAGCGAACCCGTCGGATGCGCCAATTATGATCCTCACGCTGACGTCCGATACTTATTCGCAGGGTGAACTGTACGATTTCGCCTCGACGCAGCTGGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAACGTGCGTAAACCGCAGGGCGCGCTGGAAGATGGCACTC > NC_000913/2158574‑2159058 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |