New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2170171 =	NA (NA)	34 (0.760) +CAACACTTTAAAATGCCCTATATAGGGTTAACCAGTAATTATCTGTATGATAGCTTTGAGTTCGGGAGGA	25/350	0.6	NA	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 4519239	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

GTCGGCCTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCC  >  NC_000913/4518990‑4519483                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                     gTCGGCCTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCt                                                                                                                                                                                                                                                     <  2:533839‑M2/251‑2 (MQ=255)      ccTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcc                                                                                                                                                                                                                                                >  2:531409‑M2/1‑245 (MQ=255)         ttGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctccc                                                                                                                                                                                                                                               >  2:161636‑M2/1‑242 (MQ=255)            aGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaact                                                                                                                                                                                                                                          >  2:35066‑M2/1‑239 (MQ=255)                   ggTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagct                                                                                                                                                                                                                                   >  1:406906‑M2/1‑232 (MQ=255)                     tataGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCACGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctat                                                                                                                                                                                                                                 <  1:59156‑M2/251‑22 (MQ=255)                      ataGATGACGGATGGCTGGCCTCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCAACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCTGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGACCATAAAACACTATCAGTAAGTTGTAGTCATTCTCtcctcccgaactcaaagctat                                                                                                                                                                                                                                 >  2:117430‑M2/1‑229 (MQ=255)                          aTGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatac                                                                                                                                                                                                                            >  1:22509‑M2/1‑225 (MQ=255)                            gACGGATGGCTGGCCGCTGTATGAATCACGCCTTAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGGCATTACCtcctcccgaactcaaagctatcataca                                                                                                                                                                                                                           >  2:385677‑M2/1‑223 (MQ=255)                            gACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacag                                                                                                                                                                                                                          >  1:549469‑M2/1‑223 (MQ=255)                               ggATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagata                                                                                                                                                                                                                       >  1:309077‑M2/1‑220 (MQ=255)                               ggATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagat                                                                                                                                                                                                                        <  1:145438‑M2/250‑31 (MQ=255)                               ggATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATGATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagata                                                                                                                                                                                                                       >  1:520746‑M2/1‑220 (MQ=255)                                          cGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggtt                                                                                                                                                                                                             <  1:180307‑M2/250‑42 (MQ=255)                                             tGTATGAATCACGCCTGAAGGGAAAGCTGCACGATATCAGCAAGCGTTACACTCAGCGCATTGAGAGACATAATCTGAATCTGAGACAACATCTGGCACGTCGGGGACGGAAGTTACTGTCGTTCTCAAACTCGGTGGCGATGCATGACACGGTCATCGGGCATTCTCTGAACATAAAACACTATCAGTAAGTTGGAGACATTACCtactcccgaactcaacgctatcatacagataattactggttaacc                                                                                                                                                                                                         <  1:3113‑M2/251‑46 (MQ=255)                                              gTATGAATCACGCCTGAAGGGAAAGAGGCACGTTATCAGCAAGCGTTACACTCATCGTATTGAGAGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaac                                                                                                                                                                                                          >  2:478067‑M2/1‑205 (MQ=255)                                              gTATGAACCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGCCAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTACCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccc                                                                                                                                                                                                        >  1:534949‑M2/1‑205 (MQ=255)                                                 tGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctat                                                                                                                                                                                                     <  1:556590‑M2/251‑50 (MQ=255)                                                  gAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtccgcccgaactcaaagctatcatacagataattactggttaaccctat                                                                                                                                                                                                     >  1:251714‑M2/1‑201 (MQ=255)                                                    aTCACGCCTGAAGGGAAAGCTGCACGTTAGCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCAGGACAAGGTCAGCGGGCATTATCTGAACATAAATCTCTATCAGTAAGTTGGAGTCATTACCgcctcccgaactcaaagcgatcagtcagataagtagtggtgaaccctatata                                                                                                                                                                                                  >  2:41854‑M2/1‑199 (MQ=255)                                                       ccgCCTGAAGGGAAAGCTGCTCGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACGCTATCATTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatataggg                                                                                                                                                                                               >  1:368614‑M2/2‑196 (MQ=255)                                                       aCGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatataggg                                                                                                                                                                                               >  1:430679‑M2/1‑196 (MQ=255)                                                             gAAGGGAAAGCTGCACGGTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGTAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcatt                                                                                                                                                                                           >  2:354045‑M2/1‑190 (MQ=255)                                                                gggAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTTGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaa                                                                                                                                                                                      >  2:466467‑M2/1‑187 (MQ=255)                                                                 ggAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaa                                                                                                                                                                                       <  1:452190‑M2/249‑64 (MQ=255)                                                                               tATCAGCAAGCGTTACACTCAGCGCATTGAGTGACATAATCTGAATCTGAGACAACATCTGGCAATGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTGCCtcctcccgaactcaaagctatcatacagatgattactggttaaccctatatagggcagttgaaagtgttgtgatctta                                                                                                                                                                        >  1:122127‑M2/1‑172 (MQ=255)                                                                               tATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCCTTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcataaagataattactggttaaccctatatagggcattttaaagtgttgtgatcttac                                                                                                                                                                       <  1:358121‑M2/251‑80 (MQ=255)                                                                                   aGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTAGCTGAACATAAAACACTATCAGTAAGTTGGAGGCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccag                                                                                                                                                                   >  1:574407‑M2/1‑168 (MQ=255)                                                                                          gTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATATGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactaaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagt                                                                                                                                                            <  1:43932‑M2/251‑91 (MQ=255)                                                                                            tACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtgg                                                                                                                                                          <  2:488296‑M2/251‑93 (MQ=255)                                                                                                  cAGCGCAGTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgagcttacccagcaatagtggacacg                                                                                                                                                     >  2:102015‑M2/1‑153 (MQ=255)                                                                                                           gAGCGACATAATCTGCATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTAATGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtg                                                                                                                                           <  2:420509‑M2/251‑108 (MQ=255)                                                                                                           gAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataatgactgggtaaccctatatagggcattttaaagtgttgtgatctttcccagcaatagtggacacgcggctaagtg                                                                                                                                           >  1:404913‑M2/1‑144 (MQ=255)                                                                                                               gACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagta                                                                                                                                       >  2:180307‑M2/1‑140 (MQ=255)                                                                                                                 cATAATCTGAATCTGAGACAACATCTGGCAAGACTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGAGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaa                                                                                                                                      <  2:319299‑M2/250‑113 (MQ=255)                                                                                                                         gaatctgaGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggccaagtgagtaatctctc                                                                                                                                >  1:623218‑M2/1‑130 (MQ=255)                                                                                                                               gagaCAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagagg                                                                                                                       <  1:9338‑M2/251‑128 (MQ=255)                                                                                                                               gagaCAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca                                                                                                                           >  2:166143‑M2/1‑124 (MQ=255)                                                                                                                                     acaTCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc                                                                                                                 >  1:114776‑M2/1‑118 (MQ=255)                                                                                                                                     acaTCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAAGCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacactcggctaagtgagtaaactctcagtcagaggtgtctc                                                                                                                 >  2:14179‑M2/1‑118 (MQ=255)                                                                                                                                                    gggACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGGTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggcgaagtgagtaaactctcagtcagaggtgactcacaagacaaaaca                                                                                                    >  1:29139‑M2/1‑103 (MQ=255)                                                                                                                                                     ggACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtccgcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcgtacccagcaatagttgacacgcggctaagttagtaaactctcagtcagaggtgactcacaagataaagcagtt                                                                                                 >  2:556590‑M2/1‑102 (MQ=255)                                                                                                                                                       aCGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactcgcaggcagaggtgactcacaagacaaaacagtttc                                                                                               >  2:246362‑M2/1‑100 (MQ=255)                                                                                                                                                              ttACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagt                                                                                        <  1:394754‑M2/251‑159 (MQ=255)                                                                                                                                                                aCTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatattacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagta                                                                                       <  2:299456‑M2/250‑160 (MQ=255)                                                                                                                                                                                 cGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccat                                                                     >  1:302854‑M2/1‑74 (MQ=255)                                                                                                                                                                                    tGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcg                                                                  <  1:14429‑M2/251‑181 (MQ=255)                                                                                                                                                                                     ggAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgc                                                                 >  1:420509‑M2/1‑70 (MQ=255)                                                                                                                                                                                       aGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcat                                                               >  2:211243‑M2/1‑68 (MQ=255)                                                                                                                                                                                           gCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaat                                                           >  2:508832‑M2/1‑64 (MQ=255)                                                                                                                                                                                               gACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttc                                                        >  1:164192‑M2/1‑60 (MQ=255)                                                                                                                                                                                                          cGGGCAATATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATGACCtcctcccgaactcaaagatatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagat                                             >  1:605640‑M2/1‑49 (MQ=255)                                                                                                                                                                                                              cATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcgttcccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaa                                        >  1:551761‑M2/1‑45 (MQ=255)                                                                                                                                                                                                                    cTGAACATAAAACACTATCAGTACGTTGGAGTAATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctctatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagccagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgcatttcgtagttcagatctgaagcttgc                                  <  2:58209‑M2/251‑213 (MQ=255)                                                                                                                                                                                                                             aaaCACTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagcttgcagaatgcat                         >  1:570275‑M2/1‑30 (MQ=255)                                                                                                                                                                                                                                cacTATCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagcttgcagaatgcatcgg                      <  1:81364‑M2/251‑225 (MQ=255)                                                                                                                                                                                                                                    aTCAGTAAGTTGGAGTCATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagcttgcagaatgcatcggtgt                   >  2:145438‑M2/1‑23 (MQ=255)                                                                                                                                                                                                                                                    cATTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcatgaatttcgtagttaagatctgaagcttgcagaatgcatcggtgttactgccggagtccgt   >  2:311373‑M2/1‑7 (MQ=255)                                                                                                                                                                                                                                                     aTTACCtcctcccgaactcaaagctatcatacagataattactggttaaccctatatagggcattttaaagtgttgtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacaagacaaaacagtttcaaccagtaaaaaaacgtaaacaccattcgcgtgaatttcgtagttaagatctgaagcttgcagaatgcatcggtgttactgccggagtccgtg  <  1:263412‑M2/250‑245 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                     GTCGGCCTTTGAGGTCGTGGTATAGATGACGGATGGCTGGCCGCTGTATGAATCACGCCTGAAGGGAAAGCTGCACGTTATCAGCAAGCGTTACACTCAGCGCATTGAGCGACATAATCTGAATCTGAGACAACATCTGGCAAGGCTGGGACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTGCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCC  >  NC_000913/4518990‑4519483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.