New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	15 (0.240)	17 (0.290)	16/458	1.6	52.3%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	17 (0.290)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

TAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCG  >  NC_000913/1209353‑1209843                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                  tAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                                                                                                                                  >  1:34957/1‑251 (MQ=255)               gATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAAcc                                                                                                                                                                                                                                     <  2:169556/250‑1 (MQ=255)                     ccGTTGCATACCCCTGAATTCTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGACTTTGCCAGTTCCTGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGTGGAGTGGCTGAAGGCCACGGAACCGGGTCACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                                                                                                              <  2:510618/251‑1 (MQ=255)                          gCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgag                                                                                                                                                                                                                         >  1:141422‑M2/1‑225 (MQ=255)                          gCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                                                                                                                         <  1:367558/251‑1 (MQ=255)                           cATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAAGCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                                                                                                                                        <  2:313914/251‑1 (MQ=255)                                            acaaTAGAGCGACCTGTATCAATCCCCCCCCCGTACTCCCAGCCACGAATAACCTCACCACGTAAATCAGGTAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                                                                                                       <  2:879/249‑1 (MQ=255)                                                     cGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt                                                                                                                                                                                              <  2:198725‑M2/251‑54 (MQ=255)                                                               cAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACTATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                                                                                                                     <  1:188368/250‑1 (MQ=255)                                                                       cgcccgTAATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGCAGAGcctactcccacacccaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccacacggatt                                                                                                                                                                            <  1:209681‑M2/251‑72 (MQ=255)                                                                               aTCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTCTTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCAAGGAACCGGGACACCAACAGGTAATGCAGAGCATTATCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAACAGGGGGAttt                                                                                                                                                                    >  1:355132/1‑251 (MQ=255)                                                                                   cAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaa                                                                                                                                                                >  2:34957‑M2/1‑168 (MQ=255)                                                                                                         gTAAAGCAGGCAATTTATTTGTCGGATAAGCCTTGGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaatccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgagaagtgcggta                                                                                                                                          >  2:2494‑M2/1‑146 (MQ=255)                                                                                                           aaaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                                                                                                                         >  2:507272‑M2/1‑144 (MQ=255)                                                                                                                                                gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc                                                                                                   >  1:410082/1‑251 (MQ=255)                                                                                                                                                   ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGATGGCGGAGTGGCTGATGGACACGGAACCGGGACACCAACAGGTAATGCAGAGACTTCTCCCAAACCAACGTTTATGAAAATGAAGCACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTCATgcgat                                                                                                >  1:269417/1‑249 (MQ=255)                                                                                                                                                      ggTATTCTTCAGCAGACAAAGCGGCCCCATTGCATTTCCGCCAGCCTGTTGGCGGAGTGGCTGGAGGAACCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaccgtgccatccgatttgatatcgccaaacggattcttgcggcttcacagcagcgcgcgaagtgcggacagtaactggtcgtgccgccccttctccagcatggcaccggatgcc                                                                                             <  2:218030‑M2/251‑151 (MQ=255)                                                                                                                                                        tATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctc                                                                                           <  1:158835‑M2/251‑153 (MQ=255)                                                                                                                                                         aTTCTTCAGCAGAAAAAGCGGCACCATTGCAGTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGTAAATGGCATCATTCCTGCTTTTACCAGGGTGATTGAACATGCTTATTGGCTATGTACGCGTATCATCAAATGACCAGAACACAGATCTACATCTTCATGCGCCGAACtg                                                                                          <  2:385139/251‑1 (MQ=255)                                                                                                                                                             ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                                                                                                              <  1:133356/195‑1 (MQ=255)                                                                                                                                                             ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                                                                                                              >  2:133356/1‑195 (MQ=255)                                                                                                                                                                        aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgtggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaggt                                                                           <  1:1396‑M2/251‑169 (MQ=255)                                                                                                                                                                         aacGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGAACCGGGACACCAACAGGTAATGCAGAGACTTCTCCCGAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTCACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAATACAGATCTACAACGTAATGCGCTGACCTGTGCAGGATGCGAGCTg                                                                          >  2:850/3‑251 (MQ=255)                                                                                                                                                                            agCACCATTGCATCTAAGCCAACCTGTTGGCGGAGTGGCTGGACGACACGGCACCGGAACACCCACAGGAAGTGCAGAGCCTTAACCCAAAACAACGTTTCTGAAAATGAAGAAATAACAAGCAAATGGCATCATACCTACTTTTACCAGGGGGATTTAACCTGCTTATTGGATATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGAtt                                                                       >  2:625858/2‑251 (MQ=255)                                                                                                                                                                               aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccagccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgcttcaaagttcctcct                                                                    >  1:518852‑M2/1‑76 (MQ=255)                                                                                                                                                                                       aTTTCATCCAGCCCGTTGGCGGAGCGGCTGAAGGCGACGGAACCGGGACACCCACTGCTAATGCAGAGccttctcccaacccacggttttcgagagccgtttgcacactgccatccgatttgatatcgccaaacggaatcttgcgccttaacagccgcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgccaagttcctcctgccacatg                                                            <  2:30763‑M2/251‑184 (MQ=255)                                                                                                                                                                                          tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGAGTTTTGAAGACAAGa                                                          <  2:410082/250‑1 (MQ=255)                                                                                                                                                                                               cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagt                                                     <  1:30184‑M2/250‑191 (MQ=255)                                                                                                                                                                                                                   tGAAGGCCACGGAACCGCCACACCAACAGGTAATGCAGAGccttctcccaaacccaggatttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtacctggtcgtgccgccccttctccaggctggcaccggatgcctccaccccgctgcaaagttcctcctgcaacatgtcaacgtagtcatcatccagatcggtgg                                <  2:255191‑M2/251‑212 (MQ=255)                                                                                                                                                                                                                    gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtg                                 >  2:158835‑M2/1‑39 (MQ=255)                                                                                                                                                                                                                                  cGGGACAACAACAGGTAATGCAGATccttctcccaaaccaaggtgttcgagagtcgtttgcacattgacatccgatttgatatcgccaaacggattcttgcggcttaacagcagcacgcgaagtgctgtaaggaactggtcgtgccgccccttctccaggcggtccccgtatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtcgcaggcgttacgatct                 >  2:163016‑M2/1‑25 (MQ=255)                                                                                                                                                                                                                                        acCAACAGGTAATGCAGAGCCTTCTCCCAAACCGACGTTTAAGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTGACCAGGGGGATTTAACATGCTTATTGACTATGTACGCGTATCAACAAATGACCAGAACACAGATCTATAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGATAAGATAAGCGGCACAAAGCACGAAAGGCCGGGACTGAAAAAACTGCTCAgg           <  1:610665/251‑1 (MQ=255)                                                                                                                                                                                                                                         ccAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttttcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggtt          >  2:34036‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                                                 tAATGCAGAGccttctccccaaccaaggttttcgagcgccgtctgcacagtgccatccgacttgatatcgccaaacggcttcttgcggcttaacagcagcgcgcgaagggcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtactcatccagctcggtggccggcgtgccgggcggggggttaccacggg  <  2:79799‑M2/251‑242 (MQ=255)                                                                                                                                                                                                                                                      cAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa                                                                                                                  >  1:185073/1‑134 (MQ=255)                                                                                                                                                                                                                                                      cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa                                                                                                                  <  2:185073/134‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                  TAATCCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCG  >  NC_000913/1209353‑1209843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.