| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,397,239 | Δ17,203 bp | IS5‑mediated | ynaJ–[recT] | 23 genes ynaJ, uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, [recT] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1396275–1397241 | 1414441 | 17201–18167 | 6 [3] | [0] 38 | [insH4]–[recT] | [insH4],ynaJ,uspE,fnr,ogt,abgT,abgB,abgA,abgR,mcaS,smrA,dgcM,ynaN,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,[recT] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 38 (0.680) | 36/492 | 0.5 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1414442 = | 0 (0.000) | coding (352/810 nt) | recT | recombinase RecT | |||||
CCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTTTCAGTCTTGCGACAGCATAGACGTGGGTAACCGGGGCATCTTCGTTTTCTCCCGGGCGGTGTATTAACTTTTCATCAAGGCCAAATTCGAAGCTAAACTCGTCACCTTCACGGACAACACGGGCTGACAGGCTGGCGATTTGACCAGAACGGCGAGCCAGATCAATCATGCCGCGATAGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTT > NC_000913/1414205‑1414678 | gaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGtt < 1:240237‑M2/13‑1 (MQ=255) aaaaacgataaccaactggcgatgttagtcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCt < 1:555450‑M2/15‑1 (MQ=255) aaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCttt > 2:347456‑M2/235‑251 (MQ=255) ataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTAcc < 1:191584‑M2/22‑1 (MQ=255) actggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactacaaactgggaataacgccttaaatggagaagaaacggtatccataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCttt > 1:25059‑M2/223‑251 (MQ=255) acgggcgatgttattcacgctggccaacctggttcgggcggaccaaatgagacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtcgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTTCCGCTCttt < 2:474300‑M2/29‑1 (MQ=255) tgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGttttt > 2:392461‑M2/215‑251 (MQ=255) tattcacgctggccaacctgttgcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccGTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTttat < 2:378949‑M2/39‑1 (MQ=255) tattcacgctggccaacctgtgtcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgctccttccTTAGCTGAAAGTTCTTTTTACCGCTCTTTTCGTTTttat < 2:657‑M2/39‑1 (MQ=255) ttcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTAc > 1:195796‑M2/210‑251 (MQ=255) ggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGc < 1:236829‑M2/50‑1 (MQ=255) ccaacctgtgtcgggcggaccaaatgatacgtcagtgggagatatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAg < 1:523333‑M2/52‑1 (MQ=255) caacctgtttcgggcggcccaaatgatacgtcagtgggagcgatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagattttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCTCTCTTTTCGTTTTTATTACCAAAAGGCAGt > 2:185851‑M2/199‑251 (MQ=255) aaatgttacatcagtgggaaagctctcactcaaaactggggataacgacttaaatggcgaagaaacggtataaataggctgattcaaggcatttacgggagaaaaactcggctcaaacatgacgaactgaaatgactgagtaagccgagaagaatttccccgcttattcgcacattccTTAGCTGCACGTTCTTTTTACCGATCTTTTCGTTTTTATTACCACAAGGCAGTAAATATGCCTGACCTAGGgc > 2:518272‑M2/179‑251 (MQ=255) cgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTg < 1:338787‑M2/81‑1 (MQ=255) cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCtgtg < 2:186503‑M2/99‑1 (MQ=255) actggggataacgacttaaatggcgaagaaacggcctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTTGTTTTTTTTACCAAAAGGCAGTAAATATGCATGCACGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGt > 1:110167‑M2/145‑251 (MQ=255) ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACg < 2:228917‑M2/110‑1 (MQ=255) cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACt < 1:392461‑M2/118‑1 (MQ=255) taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGAc < 1:164326‑M2/121‑1 (MQ=255) gtagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATa < 2:177975‑M2/131‑1 (MQ=255) aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAgtgt < 1:272637‑M2/135‑1 (MQ=255) aacggtctaaataggctgattcaaggcatttacgggagaaaaaagcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaataatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATTACCGAGGGCGCTACCTGGCGCAAGTCCGAGCTTTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTc < 2:272313‑M2/136‑1 (MQ=255) ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGtt > 1:176128‑M2/110‑251 (MQ=255) agataggcggattcaaggcagttacgggagaaaaaagcggcgcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGGTCTTTTTACCGCTCTTTTCGGTTTGATGACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTc < 2:441917‑M2/144‑1 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagacagccgagaagaatttccccgcttattagcaccttccTTAGCTGAACGATCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACATGGCTCAAGTCCGAGCTGTGAACACTGTACGACCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAAttt > 1:511022‑M2/84‑251 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTAAGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGAt > 1:358074‑M2/71‑251 (MQ=255) ggctcaaacatgaggaaatgaactgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGTACGTTCTTTTTACCGCTCTTTTCGTTTTTCTTACCCAAAGGCAGTAAATATGCTTGACCGAGGGCGCTACCTGGCTCAATTCCGGGCTTGGGACACTGTCCGATCGCACTGACAAAACTCATAGTGTCTCAGTTTCTTACCGCCGGAACTTTACGCATTTATGTGGTGGCGAt > 2:265588‑M2/70‑250 (MQ=255) tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcaccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGCGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGCATTTCTGTGGTGGCGATACgg > 2:140719‑M2/67‑251 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATc < 1:85840‑M2/188‑1 (MQ=255) acatgacgaaatgaaatgactgagtcagccgagaagaatatccccgcttattagcaccttccTTAGCTGAACGATCTTTTTACCGCTCTTTTCGTTTTTATTACCAACAGGCAGCAAATATGCATGACCGAGGGCGCTACCTGTCTCACGTCCGCGCGGTGAACACTGTAAGATAGCACTGACAAAACTCATCGAGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATc > 1:350246‑M2/63‑250 (MQ=255) acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCTAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCa < 2:412121‑M2/189‑1 (MQ=255) caggaagaaatgaaatgactgagtcatccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTTCCAAAAGGCAGTAAATATGCATGACCGAGGGCTCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTGTCCTAACGCCGGAACGTTACGAAATTCTGTGGTGGCGATACGGATCAt < 2:398782‑M2/190‑1 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACg > 2:435452‑M2/59‑251 (MQ=255) cgtagtcagccgagcataatttccccgcttattcgctccttccTTAGCGGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTTTGGTGGCGATACGGATCATACGTTCAGCCGtcatagg < 2:401910‑M2/208‑3 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGc < 1:472797‑M2/210‑1 (MQ=255) tccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCGTGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGcc > 1:561803‑M2/23‑249 (MQ=255) tattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGAAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCtt > 1:482173‑M2/15‑251 (MQ=255) | CCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTTTCAGTCTTGCGACAGCATAGACGTGGGTAACCGGGGCATCTTCGTTTTCTCCCGGGCGGTGTATTAACTTTTCATCAAGGCCAAATTCGAAGCTAAACTCGTCACCTTCACGGACAACACGGGCTGACAGGCTGGCGATTTGACCAGAACGGCGAGCCAGATCAATCATGCCGCGATAGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTT > NC_000913/1414205‑1414678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |