Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,933,292 IS1 (+) +9 bp intergenic (+108/‑51) kup → / → rbsD K(+):H(+) symporter Kup/D‑ribose pyranase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1979270NA (NA)84 (1.500) 76/490 0.0 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 3933300 0 (0.000)intergenic (+116/‑51) kup/rbsD K(+):H(+) symporter Kup/D‑ribose pyranase
* ? NC_000913 = 3584195NA (NA)59 (1.050) 54/492 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 3933292 = 0 (0.000)intergenic (+108/‑59) kup/rbsD K(+):H(+) symporter Kup/D‑ribose pyranase

TCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATA  >  NC_000913/1979021‑1979282
                                                                                                                                                                                                                                                         |            
tCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCAccc             >  1:225953/1‑251 (MQ=11)
           tCATGGCCATACCAATGATTTTCTGGTGCGCCACGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGAGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTCGCTGAACAGGAGGGACAGCTGGTCGCAACCAAACGCAATGGAGCACCTCAAAAAAACCATAATACACTAACTCAGTAAAGTGGCAGCATCAccccgtcagcggtg  >  2:321746/1‑240 (MQ=11)
                                                                                                                                                                                                                                                         |            
TCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATA  >  NC_000913/1979021‑1979282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.