Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,367,726 G→T L63I (CTT→ATT)  pspF ← DNA‑binding transcriptional dual regulator PspF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,367,7260GT100.0% 125.3 / NA 35L63I (CTT→ATT) pspFDNA‑binding transcriptional dual regulator PspF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (17/18);  total (17/18)

ACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATG  >  NC_000913/1367479‑1367961
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           
accaccCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACCCAATCACGCGCAATAATTTCGCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCATGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGa                                                                                                                                                                                                                                          <  2:444779/251‑1 (MQ=255)
      cGCACATTCACCTGCAATGGTTGTCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCCCCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGTTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATaaa                                                                                                                                                                                                                                    <  1:165476/251‑1 (MQ=255)
                    cAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAAc                                                                                                                                                                                                                      <  1:100653/251‑1 (MQ=255)
                     aaTGGTTGGCTGCCGACAACGCGCCCCAGTTCACCGTACTCAATCAAGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCAAGCAGCTTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACg                                                                                                                                                                                                                     >  2:410832/1‑251 (MQ=255)
                            ggCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGggagg                                                                                                                                                                                                                >  2:305276/1‑249 (MQ=255)
                                   gccAACGCGACCCAGTTCATCGTACTCAATAACGCACAATAATTTATCCTGCACCATCATCGGTGCAGTAGCGAGTTCATCACGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAACCAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCACCGGGAGGAGAGATaa                                                                                                                                                                                                        >  2:427576/1‑250 (MQ=255)
                                      aaCGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGc                                                                                                                                                                                                     >  2:172451/1‑250 (MQ=255)
                                                        gTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGATGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCCCGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGcc                                                                                                                                                                                  >  2:222961/1‑250 (MQ=255)
                                                             cAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCttt                                                                                                                                                                              <  1:309707/250‑1 (MQ=255)
                                                                    gcgcAATAATTTCGCCTGCACCATCATCGTGGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGGCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTGCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGc                                                                                                                                                                      <  2:202431/251‑1 (MQ=255)
                                                                     cgcAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGcc                                                                                                                                                                     <  1:315524/251‑1 (MQ=255)
                                                                              ttCTCCTGCCCCCTCATCGGTGCCGTAGCGAGTTCATCAAGAAATATCTTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCCCCGGTAAACGCCCCCGCTCCGTGCACCATCAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACTGCCCTGGCCTACGGGAGGAGAGATAAGGCATGCGGCTGGCAATCAGCTCTTTACCGGTTCCGCGtttgc                                                                                                                                                             <  2:397278/250‑4 (MQ=255)
                                                                                         catcatCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGc                                                                                                                                                  >  1:178132/1‑250 (MQ=255)
                                                                                                  tGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTAcc                                                                                                                                                                           <  2:112244/216‑1 (MQ=255)
                                                                                                  tGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTAcc                                                                                                                                                                           >  1:112244/1‑216 (MQ=255)
                                                                                                      gTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTTGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAg                                                                                                                                    <  1:222961/251‑1 (MQ=255)
                                                                                                          cGAGTTCATCAAGAAATAGCGTTCCGCCGCCGGCACGTTCAAATCTCCCTGGATGACGTTTTGGCGCTCCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGGAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGt                                                                                                                                <  1:418741/251‑1 (MQ=255)
                                                                                                                catcaAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCg                                                                                                                             >  1:11661/1‑248 (MQ=255)
                                                                                                                catcaAGAAATAGCGGACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCgaga                                                                                                                          <  2:11661/251‑1 (MQ=255)
                                                                                                                 agcaAGAAATAGTGTACCGCCGTCGGCACGTTCAAATCTCCCGGAATGACGTTTTTGCGCCCCGGTAAACGTCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGGTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGAt                                                                                                                         <  2:326341/249‑1 (MQ=255)
                                                                                                                       aaaTAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGaa                                                                                                                    >  1:7384/1‑250 (MQ=255)
                                                                                                                       aaaTAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTACAGCGGCGCGAGATGCGaa                                                                                                                    >  1:198264/1‑250 (MQ=255)
                                                                                                                                 ccgccgACGGCACGTTCAAATCTCCCTGGATGACGTCTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGACTCCAGCAGCTTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAACTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGGGGGGCGAGCTGCGAAACCTGTTcc                                                                                                           >  2:235804/1‑249 (MQ=255)
                                                                                                                                        cGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCg                                                                                                  <  1:224275/251‑1 (MQ=255)
                                                                                                                                        cGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCg                                                                                                  <  2:209415/251‑1 (MQ=255)
                                                                                                                                                        cccTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGTTTCGTGACCAAACAGTTCGGAATCCAGCAGAGTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAGCGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTGCCGGTGCCGCTTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCt                                                                                  <  2:401889/251‑1 (MQ=255)
                                                                                                                                                         ccTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCATCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATATAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTGCCGGTGCCGCGTTCGCCGATTATGATCGCCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCGCTTCGAGAAAGCTGTTCGCCTc                                                                                 <  1:354172/251‑1 (MQ=255)
                                                                                                                                                               tGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGCTAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGAACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCCCCa                                                                             >  2:290814/1‑249 (MQ=255)
                                                                                                                                                                                         ccccGCTTCGTGACCAGACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGCGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGCTGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAACCCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCatg                                                  >  1:199031/1‑250 (MQ=255)
                                                                                                                                                                                             gCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGcc                                                                                                                                                                     <  2:176763/131‑1 (MQ=255)
                                                                                                                                                                                             gCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGcc                                                                                                                                                                     >  1:176763/1‑131 (MQ=255)
                                                                                                                                                                                                   tGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGc                                       >  1:318042/1‑251 (MQ=255)
                                                                                                                                                                                                                        cagcagATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCCACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGACGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTCAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGc                   >  2:298453/1‑251 (MQ=255)
                                                                                                                                                                                                                                      ttAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCCCTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCCTGATGAAATTCGCCACTTGTTAGTGTACTTCGCTAACTCATCCTGGc     >  2:257190/1‑251 (MQ=255)
                                                                                                                                                                                                                                         aCGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATg  <  1:298453/251‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           
ACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTGACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATG  >  NC_000913/1367479‑1367961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: