Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,367,726 G→T L63I (CTT→ATT)  pspF ← DNA‑binding transcriptional dual regulator PspF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,367,7260GT100.0% 125.3 / NA 35L63I (CTT→ATT) pspFDNA‑binding transcriptional dual regulator PspF
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (17/18);  total (17/18)

ACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATG  >  NC_000913/1367479‑1367961
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           
accaccCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACCCAATCACGCGCAATAATTTCGCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCATG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGa                                                                                                                                                                                                                                          <  2:444779/251‑1 (MQ=255)
      cGCACATTCACCTGCAATGGTTGTCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCCCCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGTTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATaaa                                                                                                                                                                                                                                    <  1:165476/251‑1 (MQ=255)
                    cAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAAc                                                                                                                                                                                                                      <  1:100653/251‑1 (MQ=255)
                     aaTGGTTGGCTGCCGACAACGCGCCCCAGTTCACCGTACTCAATCAAGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCAAGCAGCTTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACg                                                                                                                                                                                                                     >  2:410832/1‑251 (MQ=255)
                            ggCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGggagg                                                                                                                                                                                                                >  2:305276/1‑249 (MQ=255)
                                   gccAACGCGACCCAGTTCATCGTACTCAATAACGCACAATAATTTATCCTGCACCATCATCGGTGCAGTAGCGAGTTCATCACGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAACCAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCACCGGGAGGAGAGATaa                                                                                                                                                                                                        >  2:427576/1‑250 (MQ=255)
                                      aaCGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGc                                                                                                                                                                                                     >  2:172451/1‑250 (MQ=255)
                                                        gTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGATGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCCCGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGcc                                                                                                                                                                                  >  2:222961/1‑250 (MQ=255)
                                                             cAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCttt                                                                                                                                                                              <  1:309707/250‑1 (MQ=255)
                                                                    gcgcAATAATTTCGCCTGCACCATCATCGTGGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGGCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTGCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGc                                                                                                                                                                      <  2:202431/251‑1 (MQ=255)
                                                                     cgcAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGcc                                                                                                                                                                     <  1:315524/251‑1 (MQ=255)
                                                                              ttCTCCTGCCCCCTCATCGGTGCCGTAGCGAGTTCATCAAGAAATATCTTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCCCCGGTAAACGCCCCCGCTCCGTGCACCAT‑CAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACTGCCCTGGCCTACGGGAGGAGAGATAAGGCATGCGGCTGGCAATCAGCTCTTTACCGGTTCCGCGtttgc                                                                                                                                                             <  2:397278/250‑4 (MQ=255)
                                                                                         catcatCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGc                                                                                                                                                  >  1:178132/1‑250 (MQ=255)
                                                                                                  tGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTAcc                                                                                                                                                                           <  2:112244/216‑1 (MQ=255)
                                                                                                  tGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTAcc                                                                                                                                                                           >  1:112244/1‑216 (MQ=255)
                                                                                                      gTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTTGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAg                                                                                                                                    <  1:222961/251‑1 (MQ=255)
                                                                                                          cGAGTTCATCAAGAAATAGCGTTCCGCCGCCGGCACGTTCAAATCTCCCTGGATGACGTTTTGGCGCTCCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGGAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGt                                                                                                                                <  1:418741/251‑1 (MQ=255)
                                                                                                                catcaAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCg                                                                                                                             >  1:11661/1‑248 (MQ=255)
                                                                                                                catcaAGAAATAGCGGACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCgaga                                                                                                                          <  2:11661/251‑1 (MQ=255)
                                                                                                                 agcaAGAAATAGTGTACCGCCGTCGGCACGTTCAAATCTCCCGGAATGACGTTTTTGCGCCCCGGTAAACGTCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGGTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGAt                                                                                                                         <  2:326341/249‑1 (MQ=255)
                                                                                                                       aaaTAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGaa                                                                                                                    >  1:7384/1‑250 (MQ=255)
                                                                                                                       aaaTAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTACAGCGGCGCGAGATGCGaa                                                                                                                    >  1:198264/1‑250 (MQ=255)
                                                                                                                                 ccgccgACGGCACGTTCAAATCTCCCTGGATGACGTCTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGACTCCAGCAGCTTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAACTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGGGGGGCGAGCTGCGAAACCTGTTcc                                                                                                           >  2:235804/1‑249 (MQ=255)
                                                                                                                                        cGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCg                                                                                                  <  1:224275/251‑1 (MQ=255)
                                                                                                                                        cGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCg                                                                                                  <  2:209415/251‑1 (MQ=255)
                                                                                                                                                        cccTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGTTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGAGTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAGCGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTGCCGGTGCCGCTTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCt                                                                                  <  2:401889/251‑1 (MQ=255)
                                                                                                                                                         ccTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCATCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATATAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTGCCGGTGCCGCGTTCGCCGATTATGATCGCCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCGCTTCGAGAAAGCTGTTCGCCTc                                                                                 <  1:354172/251‑1 (MQ=255)
                                                                                                                                                               tGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGCTAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGAACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCCCCa                                                                             >  2:290814/1‑249 (MQ=255)
                                                                                                                                                                                         ccccGCTTCGTG‑ACCAGACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGCGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGCTGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAACCCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCatg                                                  >  1:199031/1‑250 (MQ=255)
                                                                                                                                                                                             gCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGcc                                                                                                                                                                     <  2:176763/131‑1 (MQ=255)
                                                                                                                                                                                             gCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGcc                                                                                                                                                                     >  1:176763/1‑131 (MQ=255)
                                                                                                                                                                                                   tG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGc                                       >  1:318042/1‑251 (MQ=255)
                                                                                                                                                                                                                        cagcagATTTTCATTTAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCCACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGACGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTCAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGc                   >  2:298453/1‑251 (MQ=255)
                                                                                                                                                                                                                                      ttAACGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCCCTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCCTGATGAAATTCGCCACTTGTTAGTGTACTTCGCTAACTCATCCTGGc     >  2:257190/1‑251 (MQ=255)
                                                                                                                                                                                                                                         aCGCCGCGCAGTTAATGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATg  <  1:298453/251‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           
ACCAACCGCACATTCACCTGCAATGGTTGGCTGCCGCCAACGCGCTCCAGTTCACCGTACTCAATCACGCGCAATAATTTCTCCTGCACCATCATCGGTGCCGTAGCGAGTTCATCAAGAAATAGCGTACCGCCGTCGGCACGTTCAAATCTCCCTGGATGACGTTTTTGCGCACCGGTAAACGCCCCCGCTTCGTG‑ACCAAACAGTTCGGAATCCAGCAGATTTTCATTTAACGCCGCGCAGTTAAGGGAAATAAACGGCCCTTGCCAACGGGAGGAGAGATAATGCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGAAACCTGTTCCAGCACTTCGAGAAAGCTGTTCGCCTCACCAAGTAAATTATCTTTGTATTCTGCCATGATGAAATTCGCCACTTGTTAGTGTAATTCGCTAACTCATCCTGGCATG  >  NC_000913/1367479‑1367961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑