New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2947467	15 (0.370)	5 (0.190)	5/330	1.7	38.5%	intergenic (+4/‑30)	metZ/metW	tRNA‑Met/tRNA‑Met
	?	NC_000913	2947688 =	6 (0.220)					intergenic (+5/+69)	metV/amiC	tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C

CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGTTTACGCTCTTCCTCAACGTTACTGATAAACGCCGTTTCGACC  >  NC_000913/2947456‑2947898                                                                                                                                                                                                                                         |                                                                                                                                                                                                                   cGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACTCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTCTTGAACACCCCAACGGgtg                                                                                                                                                                                                  >  1:319554/1‑251 (MQ=255)        aaTTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCGGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGttttttt                                                                                                                                                                                           <  1:353289/251‑1 (MQ=255)                   gatgaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAACTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGCGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGCCCCCCGCAACCAATTATTGTAAACCCTAACGGGTGTTTTTTTGTTTCTGGtcc                                                                                                                                                                                >  1:149112/1‑250 (MQ=255)                      gaAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTGGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATAAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTAATAACCCGAAGGTCGCCGGTTCAAATCCGGCCCCCGCAACCACTTATTGAACACCCTAACGGGTGTTTTTTTGCTTCTGGTCTccc                                                                                                                                                                             >  1:270152/1‑251 (MQ=255)                                                               gtgtttgttcaaaatcatgccaaatccgtgatcggggtaaaaaaaaggttgcatgaaaacacgagcggagtatagggcgcgtccacggacgcggggtggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggcccccgcaaccaattaTTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTtc                                                                                                                                     <  2:108491‑M2/80‑1 (MQ=255)                                                                                          gtgatgggggtaaaagaaaggttgaacgaaaccgcgagcgtggtatagtgcgaatccgcggacgcggggtggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggcccccgcaaccaattaTTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATa                                                                                                         <  2:386705‑M2/108‑1 (MQ=255)                                                                                          gtgatcggggtaaaaaaaaggttgcatgaaaacgcgagcggagtatagtgcgcatccacggacgcggggtggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggcccccgcaaccaattaTTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAAt                                                                                                          >  1:400620‑M2/144‑250 (MQ=255)                                                                                                                gCAACCAATCAAATTTGATGAAGTAAAAGAAGTACGGTGACGCGGG‑TGGAGCAGCCTGGTAGCTCGTCGGGATCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAAt                                                                                    >  1:171404/1‑249 (MQ=255)                                                                                                                     cAATCAAATTTGATGAAGTAAAAGCAGTACGGTGAAGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACAACCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCCTCGGCAAAATACGCTTTAATCCCCGCCAGAATAGACt                                                                               >  2:160358/1‑250 (MQ=255)                                                                                                                              agcggagtatagtgcgcatccacggacgcggggtggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggcccccgcaaccaattaTTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTc                                                                     >  1:3929‑M2/108‑251 (MQ=255)                                                                                                                                                     ggacgcggggtggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggcccccgcaaccaattaTTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGTAAAGTCGCCGTTTTCa                                              <  2:226750‑M2/167‑1 (MQ=255)                                                                                                                                                        cgcgGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGtt                                           <  1:30467/251‑1 (MQ=255)                                                                                                                                                           ggggTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGTTTAc                                        >  1:76677/1‑251 (MQ=255)                                                                                                                                                           agactgccgcagcccggcagcccgTCGGGCACATTACACCAAGGTCCCCGGTTCCAATACGGCCACCGCCACCAATTCTTGACCACCCTCACGGGTGTATTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCCGCGCCTTTTTCTCATCCCCTTATCGCCCGCGCCGCCCCATCGGCAGAATACACTTTAATCCCCGCAAGACGAGACTCCGCACCTTCCTGCTGGCAAGTCACCGTTTTCAGTTTAc                                        >  2:184057/9‑251 (MQ=255)                                                                                                                                                             ggTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGTTTACGc                                      <  2:7063/251‑1 (MQ=255)                                                                                                                                                                                    cgGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGTTTACGCTCTTCCTCAACGTTACTGATaa                <  1:93917/250‑1 (MQ=255)                                                                                                                                                                                          cATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGTTTACGCTCTTCCTCAACGTTACTGATAAACGCCg          <  1:414982/250‑1 (MQ=255)                                                                                                                                                                                                 cgtaGGTCGTCGGTTCAAATCCGTCCCCCGCAACCAAGTATTGAACACCCTAACGGGTGTTGTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCTGCGCCTTTTTATCATCCCCTGCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTCCTGGAAATTCGCCGTTTTCAGTCTACGCTCTTCCTCAAAGTTTCTGATAAACGCCGTTTCGAcc  <  2:32138/248‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                   CGCAACCAATTAAAATTTGATGAAGTAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATCAAATTTGATGAAGTAAAAGCAGTACGGTGACGCGGGGTGGAGCAGCCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAATCCGGCCCCCGCAACCAATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTATCATCCCCTTCTCGCCAGCGTCGCCCCATCGGCAAAATACGCTTTAATCCCCGCAAGAATAGACTCCGCAACTTCCTGCTGGAAAGTCGCCGTTTTCAGTTTACGCTCTTCCTCAACGTTACTGATAAACGCCGTTTCGACC  >  NC_000913/2947456‑2947898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.