New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 25586980 (0.000)35 (0.890) 34/480 0.2 100% intergenic (‑19/‑160) eutB/intZ ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ
?NC_000913 2565489 = 0 (0.000)coding (1396/1404 nt) eutA ethanolamine ammonia‑lyase reactivase EutA

CGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGG  >  NC_000913/2565248‑2565737
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                        
ccgcgtcccgcagtcatcttaataggcaatccccggattattgcggatgtccgctacggtcattcccgacaaccccggctttgccgccacgcgctccggtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg                                                                                                                                                                                                                                                 <  1:12166‑M2/10‑1 (MQ=255)
  gcgtcacgcagtcatcttcataggcaatcaccggattattgcggatgtacgctacggtcatttccgacaacacctgctttgccgccacgcgctcctgtgagcttgccgatgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgaggtctttagtttcataagtcgttccctcaggacgGAAATGCGAGTg                                                                                                                                                                                                                                               >  1:440593‑M2/240‑251 (MQ=255)
   cgtcatgcagtcatcttcataggaaatcaccggattattgcggatgtccgctacggtcatttccgacaacacctgcattgccgccacgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcggtggctttagccagcacctcttttacatccttaaaatgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAAGGCGAGTg                                                                                                                                                                                                                                               >  2:324703‑M2/239‑250 (MQ=255)
    gtcacgcagtcatcttcataggcaatccccggattattgcggttgcccgctacggtcttttccgacaccccctgctttgccgccccgccctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAt                                                                                                                                                                                                                                             <  1:93911‑M2/14‑1 (MQ=255)
                 cttcataggaaatccccggattagtgcggatgtccgctacggtcattaccgacaacccctgctttgccgccccgcgcccctgtgagcttgccgctgcggcgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac                                                                                                                                                                                                                                  <  1:342760‑M2/25‑1 (MQ=255)
                             tcaccggattattgcggatgtccgctacggtcatttccgacaacacctgctttgccgccacgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGGGATTTCACCGTCACCGGCCCAaccgctc                                                                                                                                                                                                                    >  2:364682‑M2/213‑248 (MQ=255)
                                 cggattattgcggatgtccgctacggtcacttccgacaacacctgctttgccgccacgagctcctgtgagcttgacgatgcgacgcccgccagcaaatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcatacgtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc                                                                                                                                                                                                                >  2:285058‑M2/209‑251 (MQ=255)
                                            ggatgtccgctacggtcatttccgacaacacctgctttgccgccacgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGCTTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCg                                                                                                                                                                                                     >  2:139727‑M2/198‑251 (MQ=255)
                                                gtccgctacggtcatttccgacaacacctgatttgccgccacgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgctatacattgccgaacaatgtggtctttcgtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTAcc                                                                                                                                                                                                 >  1:357812‑M2/194‑251 (MQ=255)
                                                  ccgctacggttattaccgacaccaccccctttgccgccccgcgctccggtgagctggccggtgtgacgcccgccagcacatcccccgaacgcagtgcgttggctttagccagaacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTGCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCTTACCaa                                                                                                                                                                                               <  1:164419‑M2/60‑1 (MQ=255)
                                                     ctacggtcatttccgacaacacctgctttgccgccacgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAAtgg                                                                                                                                                                                            >  1:89562‑M2/189‑250 (MQ=255)
                                                         ggtcatttccgacaacacctgctttgccgccccgcgctcctgagagcttgccgctgcgacgcccgccagcccatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGtcgct                                                                                                                                                                                        >  1:415695‑M2/185‑249 (MQ=255)
                                                               ttccgacaacacctgctttgcagccacgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTACACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATAtagcc                                                                                                                                                                                  >  2:252676‑M2/179‑249 (MQ=255)
                                                                   gacaacacctgctttgccgccacgcgctcctgtgagattgccgatgcgacgcacgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGCAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTccccc                                                                                                                                                                              >  1:266025‑M2/175‑251 (MQ=255)
                                                                               tttgccgtcacgcgcacctgtgagcttgccgctgcgacgcccgcccgcacatcccccgaccgcagttcgttggctttagccagcacctcttttacatccttacactgctatacattgccgaccaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGTCCCAACCGATCCGCCAAAAAGCAGCGAACCAATGTCGATATAGTCCCCCGCGCGgacactc                                                                                                                                                                  >  2:303270‑M2/163‑248 (MQ=255)
                                                                                ttgccgccacgcgctcctgtgagcttgccgctgcgccgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATc                                                                                                                                                                  <  1:76643‑M2/89‑1 (MQ=255)
                                                                                   ccgccacgcgctcctgtgagcttgccgatgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACtt                                                                                                                                                              >  2:50709‑M2/159‑251 (MQ=255)
                                                                                     gccacgcgctcctgcgagcttgccgctgcgacgcccgccagcacaacccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaaatgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTACCCCGCGCGGACAATAACTTCg                                                                                                                                                            >  1:361624‑M2/157‑251 (MQ=255)
                                                                                                         tgccgctgagacgcacgacagcacatccaccgcacgcagttcgttggctttagcaagcacctctattacatccttaaactgctatacattgccgcacaatgaggtctttagtttcataagtcgttccctcagacagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGAGTACCACTGTCGATATAGTCCCCCCCCCGGACAATCACTTAGTCAATGACTGCCACCggg                                                                                                                                          >  2:132029‑M2/137‑249 (MQ=255)
                                                                                                                          ccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCTTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGgc                                                                                                                       <  1:409742‑M2/132‑1 (MQ=255)
                                                                                                                                             cagttcgttggctttagccagcacctcttttacatccttaaacttatatacattgccgaacaatgtggtctttagtttcataagtcgtgccctcaggaagGAAATGCGAGTTATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAAGCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGTCTCAACAACATGCCCAGAGc                                                                                                    <  2:400038‑M2/151‑1 (MQ=255)
                                                                                                                                                 tcggtggctttagccagcacctcttttacatccttaaaccgatagacattgtcgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCCCAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCttt                                                                                                 <  2:190021‑M2/154‑1 (MQ=255)
                                                                                                                                                                      tcttttacatccttaaactgatatacattgccgaacactgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCCCCGTCACCGGCCCAACCGATCCGCCAAAAAGAGGCGAACCAATGCCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGCGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGccacc                                                                           >  1:429582‑M2/76‑251 (MQ=255)
                                                                                                                                                                      tcttttacatccctaaactgctatacattgccgaacaatgtggtctttagtttcatacgtcgttccctcaggaagGCAATGCGAGTGCTTTCACCGTCACCGGCACAACCGATCCGCCAACAAGAGGCGTACCAATGTCGCTATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTACCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAGTTCCTGCCCGGccacc                                                                           >  2:446398‑M2/76‑251 (MQ=255)
                                                                                                                                                                       cttttacctccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTAGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGccacc                                                                           >  2:396920‑M2/75‑250 (MQ=255)
                                                                                                                                                                                ccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAggg                                                                 >  1:37369‑M2/66‑251 (MQ=255)
                                                                                                                                                                                    aaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGAt                                                              <  1:16070‑M2/189‑1 (MQ=255)
                                                                                                                                                                                        tgatatacattgccgaacaatgcggtctttagtttcctaagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCgg                                                          >  1:135766‑M2/58‑250 (MQ=255)
                                                                                                                                                                                                      gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAAcgcgc                                           >  1:269292‑M2/44‑251 (MQ=255)
                                                                                                                                                                                                          aatgtggtctttagtttcataagtcgttccctcaggaagGACATGCGAGTGATTTCACCGTCACCGGCACACCCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGAAAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTACTGCCCGGCCACCACCAGCAGGGGATGCGGATTAGGAAAACGCGcgacg                                       >  1:22977‑M2/40‑251 (MQ=255)
                                                                                                                                                                                                             gtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGaa                                     <  1:421555‑M2/214‑1 (MQ=255)
                                                                                                                                                                                                                     tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGGCCa                             >  1:16676‑M2/29‑250 (MQ=255)
                                                                                                                                                                                                                      agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAAc                           >  1:248769‑M2/28‑251 (MQ=255)
                                                                                                                                                                                                                                   gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCg              >  1:277791‑M2/15‑251 (MQ=255)
                                                                                                                                                                                                                                      ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCa           <  2:37369‑M2/240‑1 (MQ=255)
                                                                                                                                                                                                                                         tCAGGAAGGATATGCGAGTGCTGACACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTAACAATGTCGATAACGTCCCCCGCGCGGACAATTACTTCGTCAATGACTGCAAACGGGAGTTGTTGTCGCTGTGGGCGCAACAACATGCCCAGAGATTTACCAAAGGCCTGCCCGGCCACCACCAGCAGGGGCTGCGGATTCGGAAACAGCGCGACGAAATCAACCACAGCGTAGACGACCGTCAga         >  2:311129/1‑249 (MQ=255)
                                                                                                                                                                                                                                               aggaaAGGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCGTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCgcgg  <  1:421239/251‑1 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                        
CGGCAACCAGATCGGCAAAGGCAAGAAAGGTGACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTGATGACCGTCAGTACCGCGG  >  NC_000913/2565248‑2565737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.