New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	2 (0.050)	13 (0.340)	13/464	1.1	90.1%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	1 (0.030)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

GAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCG  >  NC_000913/1209361‑1209843                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  taGCATGATCCTCCGTTGCATACCCCGGAATGCTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACTAACAAACTCACCACGTAAATCAGGCAATTTATTTGGCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAGAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGATGGCCCCGGAGCCGGGACACCAACATGTAATGCAGACCCTtctca                                                                                                                                                                                                                                           <  2:391122/249‑2 (MQ=255)                           tGAATACTTCAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagccgtttg                                                                                                                                                                                                                <  2:425060‑M2/251‑36 (MQ=255)                                                        aaTCCCCCCCCCGTCATCCCAGCCACGAATAAACTCACCACTGAAATCAGGAAATGTAATTGTCGGATAAGCCTTTTCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCTGAGTGGCTGAAGGACACGGCACCGTGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccttcctatttgatatctccaa                                                                                                                                                                                   >  2:12864‑M2/1‑187 (MQ=255)                                                                                             ccacGTAAATCAGGCAATTTATTTGTCGGATACGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgc                                                                                                                                              <  1:152695‑M2/251‑102 (MQ=255)                                                                                                  tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggta                                                                                                                                          <  1:441005‑M2/250‑106 (MQ=255)                                                                                                                          aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAGTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgaattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttct                                                                                                                 >  1:59710‑M2/1‑121 (MQ=255)                                                                                                                                                 aTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctcc                                                                                          >  1:352573‑M2/1‑98 (MQ=255)                                                                                                                                                      tcAGCAGAAAAAGAGCCACCATTGCATTTCAGCCAGCCTGTTGGCGAAGTGGATGAAGGCCACGGCAACGGGACACCAACCGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgcagcttaacagcagcgcgcgacgtgcggtaagtaactggtcgtgcagccccttctccaggctggcaccggaggcctccaccac                                                                                     <  2:355692‑M2/251‑159 (MQ=255)                                                                                                                                                       cagcagAAAAAGCGGAACCATAGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGTAACCGGGACCCCAACATGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcgcagtgccatccgatttgatatcgccaaacggagtcgtgcggcttaacagcatcgcgcgaagttcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacg                                                                                    >  2:296758‑M2/1‑92 (MQ=255)                                                                                                                                                                  gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggccccggatgcctcccccacgctgcaacgttc                                                                         <  2:14060‑M2/251‑171 (MQ=255)                                                                                                                                                                    ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcct                                                                       <  1:217479‑M2/251‑173 (MQ=255)                                                                                                                                                                      cACCATTGCATTTCAGCCAGCCTGTTGGCGGAATGGCTGACGGCCACGGAACCGGGACACCAACAGGAAATGCAGCGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcc                                                                     <  1:26195‑M2/251‑175 (MQ=255)                                                                                                                                                                                             gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccacacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcacagttcctcctgcaacatgtcacagtagtcatc                                              <  1:85046‑M2/251‑198 (MQ=255)                                                                                                                                                                                                   ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCg                                        >  1:409595/1‑251 (MQ=255)                                                                                                                                                                                                                                         tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcacagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttaccacggg  <  1:259567‑M2/251‑242 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  GAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCG  >  NC_000913/1209361‑1209843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.