New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 382590	NA (NA)	32 (0.790)	28/496	0.4	100%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 480923	0 (0.000)					intergenic (‑215/+331)	tomB/acrB	Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB

TCATGTCTTTTGGGTGAGTATTCATCCATAACGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGA  >  NC_000913/480680‑481162                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                tCATGTCTTTTGGGTGAGTATTCATCCATAACGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggattt                                                                                                                                                                                                                                          <  1:247461‑M2/251‑8 (MQ=255)         tttGGGTGAGTATTCATCCATAACGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccc                                                                                                                                                                                                                                     >  1:285956‑M2/1‑236 (MQ=255)                              aaCGCGTCCCCTTTTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGCCCTGGACTTGCCCACTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCTCATTATTACGAAAAATTACAATTAGGAAGGATGCGTGACAGGACTCACTTTTTCATACTAGCACTATCCCGCAGCAGGTAAAAGCAGTTTGtggagttgcccctatatttccagacatctgttatca                                                                                                                                                                                                             >  1:440164‑M2/1‑215 (MQ=255)                               aCGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcac                                                                                                                                                                                                            <  1:344045‑M2/251‑38 (MQ=255)                                        cttcttAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccat                                                                                                                                                                                                   <  1:204258‑M2/251‑47 (MQ=255)                                                                                 aaaaCTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGttgattttcccctatattt                                                                                                                                                                                                                              <  2:311876‑M2/183‑20 (MQ=255)                                                                                 aaaaCTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatattt                                                                                                                                                                                                                              >  1:311876‑M2/1‑164 (MQ=255)                                                                                                ggACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGGCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGTAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgccccgatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactttgc                                                                                                                                           >  2:103946‑M2/1‑149 (MQ=255)                                                                                                           ctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattc                                                                                                                                <  2:242538‑M2/251‑114 (MQ=255)                                                                                                               tttGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtt                                                                                                                             <  1:229519‑M2/250‑117 (MQ=255)                                                                                                                 tGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttat                                                                                                                           <  1:390041‑M2/250‑119 (MQ=255)                                                                                                                  gTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttata                                                                                                                          <  2:240828‑M2/250‑120 (MQ=255)                                                                                                                           aCTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgttgcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac                                                                                                                >  1:64160‑M2/1‑122 (MQ=255)                                                                                                                              ataAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacg                                                                                                               >  2:247461‑M2/1‑119 (MQ=255)                                                                                                                                 aGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGTAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctct                                                                                                          >  1:157678‑M2/1‑116 (MQ=255)                                                                                                                                    cACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGGAAAAGCAGTTTGtggatttacccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgctaacccagcgcactatgcggctgccattcgttataatgctcgaacgcctctgc                                                                                                        <  2:110609‑M2/250‑138 (MQ=255)                                                                                                                                        ctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggt                                                                                                   <  1:46072‑M2/251‑143 (MQ=255)                                                                                                                                           tGCAGGTTTTCATAGCATTATTACGAACAATTACAATTAGGGAGGAAGAGGGACAGGACTCCCTTTTACATACTAGCACTAAACCGCAGCAGGAAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattccaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttatactgctcgaacgcctctgcaaggttct                                                                                                <  2:445335‑M2/251‑146 (MQ=255)                                                                                                                                            gCAGGTTTTCAGCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagctcactatgctgatgccattcgttataatgctcgaacgcctctgcaaggttct                                                                                                >  1:294433‑M2/1‑105 (MQ=255)                                                                                                                                                 ttttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctg                                                                                          <  1:393556‑M2/251‑152 (MQ=255)                                                                                                                                                  tttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATAATAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaaccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgcggc                                                                                         <  2:263483‑M2/251‑153 (MQ=255)                                                                                                                                                                taCGAAAAATTACAATTAGGAAGGAAGCGGGACATGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataattctcgaacgcctctgcaaggttctttgctgccgttaacccgtct                                                                            >  1:445335‑M2/1‑85 (MQ=255)                                                                                                                                                                    aaaaaTTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggttt                                                                       >  2:46072‑M2/1‑81 (MQ=255)                                                                                                                                                                          tACAATTAGGAAGGAAGCGGGACATGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggca                                                                  >  1:435050‑M2/1‑75 (MQ=255)                                                                                                                                                                           aCAATTAGGAAGGAAGCGGGACAGGACTCACTTTGTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataccccagcgcactatgcggatgccattcgttataatgctcgaacgccgctgcaaggttctttgctgccgttaacccttctggtttgggcagg                                                                >  2:113726‑M2/1‑74 (MQ=255)                                                                                                                                                                                           cGGGACAGGACTCAATTTTTCATACTAGCACTAACCCGCACCAGGTAAAAGCAGTTTGtggatttgcccatatatttccagacatccgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgccctatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgcagttaacccgtctggtttgggcatgatactgatgtagtcac                                                <  1:135325‑M2/251‑194 (MQ=255)                                                                                                                                                                                                       cACTTTTTACTACTAGCTCATACCCGCAGCCGGTAACAGCCGTTTGtggatttgtccctatatttcctaacatttgttatcactaaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttatactgctcgaacgcctctgcaaggttctttgctgccgataacccgtcttgtttgggcatgatactgatgtagtcacgctttattgt                                      >  2:344186‑M2/1‑46 (MQ=255)                                                                                                                                                                                                                           aaCCCGCAGCAGGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctatt                >  1:242538‑M2/1‑26 (MQ=255)                                                                                                                                                                                                                                  agcagGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtctcgctttatcgttttcacgaagctctctgctattccgttgc         >  2:313729‑M2/1‑19 (MQ=255)                                                                                                                                                                                                                                  agcagGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttac         <  1:313729‑M2/251‑233 (MQ=255)                                                                                                                                                                                                                                   gcagGTAAAAGCAGTTTGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatcctgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttact        <  1:374571‑M2/251‑234 (MQ=255)                                                                                                                                                                                                                                          aaaGCAGTTTGtggctttgccccaatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccgg  <  1:127916‑M2/250‑240 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                TCATGTCTTTTGGGTGAGTATTCATCCATAACGCGTCCCCTTCTTAGCGGTTGAACTAACGGACACCTTTCGGGATGGAAAAAACTTACTGACCTGGACTTGCCCTCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGA  >  NC_000913/480680‑481162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.