New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381260 =	NA (NA)	21 (0.520)	21/496	0.7	100%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	481030 =	0 (0.000)					intergenic (‑322/+224)	tomB/acrB	Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB

CTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATG  >  NC_000913/480786‑481274                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     cttacgtcagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGc                                                                                                                                                                                                                                                 >  1:129425‑M2/245‑250 (MQ=255)   tacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCaa                                                                                                                                                                                                                                               <  2:129425‑M2/8‑1 (MQ=255)             aaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGaa                                                                                                                                                                                                                                    <  1:106748‑M2/19‑1 (MQ=255)                                               gcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTAt                                                                                                                                                                                                  <  2:298536‑M2/53‑1 (MQ=255)                                                   cgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAgc                                                                                                                                                                                              <  2:380067‑M2/57‑1 (MQ=255)                                                                                             ttgcgatcttttcctgtgtggtacgccgtccgcgtttatccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcccttatttcagtgatattagttgtctggagattcagggggcccgtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTCAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATg                                                                                                                                                     >  1:203620‑M2/153‑250 (MQ=255)                                                                                                       ttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATcc                                                                                                                                           <  1:229535‑M2/108‑1 (MQ=255)                                                                                                              gtggtgcgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaaggctatcacgtagttaagtgatattggttgtctggatattcagggggccagtctaTACCGCAAATAATTAGGAATAGCCTCTAAAGGAGTATGGATTATTATATTTATTAGCGGTTCTTAAGATAATTTAGCTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTa                                                                                                                                    <  1:448478‑M2/115‑1 (MQ=255)                                                                                                                                          ctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGtt                                                                                                       >  2:112237‑M2/108‑251 (MQ=255)                                                                                                                                                        atctgttctacaatgactagtctaaaaactagtattaagcatatcacttatttaagagatattgaatgtctggagattcagagggcaagactaTACCGCAAATAATTAAGAATAGCATCTAAATGATTATGGATTATTCAATCTATTAGCGCTACTTAATATAAATTAACTATCAATCATCATTTTTTATGAATTTTATCCGTGGTTAATAATGGATTTCGTATGAGATCATGAGTTGGTGGTTCaattcc                                                                                         >  2:258038‑M2/94‑249 (MQ=255)                                                                                                                                                                          agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGt                                                                       >  2:384838‑M2/76‑251 (MQ=255)                                                                                                                                                                              taaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCATTAATGTTCGTAGGTTATg                                                                   >  2:335653‑M2/72‑251 (MQ=255)                                                                                                                                                                                aaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGc                                                                  >  1:329024‑M2/70‑250 (MQ=255)                                                                                                                                                                                     tagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAattactccttaatgttctaagtttatgattaaa                                                             >  1:269609‑M2/65‑234 (MQ=255)                                                                                                                                                                                      agtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATTAGATCCTGAGTTGGTGGTTCAATTACTCCTTAAGGTTCGTAGGTTATGCATaaa                                                             <  2:167914‑M2/186‑1 (MQ=255)                                                                                                                                                                                       gtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATaaaaa                                                           >  2:393279‑M2/63‑250 (MQ=255)                                                                                                                                                                                                               gtgatattggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGTTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGAt                                  <  1:293852‑M2/213‑1 (MQ=255)                                                                                                                                                                                                                    attggttgtctggagattcagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTacac                             <  1:146487‑M2/218‑1 (MQ=255)                                                                                                                                                                                                                                      cagggggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATgatgat            <  1:456‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                           ggccagtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAg      <  2:174682‑M2/241‑1 (MQ=255)                                                                                                                                                                                                                                               agtctaTACCGCAAATAATTAAGAATAGCCTCTAAATGCTTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATg  >  1:371813‑M2/7‑251 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     CTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGAAATTGGTGACACTAATACCAGGATTGCTCTGAATATGACGTAATAACCGAGGAATGAATAAAGAATTACCGCAAATAATTAAGAATAGCCTCTAAATGATTATGGATTATTAAATCTATTAGCGCTACTTAATATAAATTAACTAACAATCAGTATTTTTTATGAATTTTATCCGTGGTTAATACTGGTTTTCGTATGAGATCCTGAGTTGGTGGTTCAATTACTCCTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATG  >  NC_000913/480786‑481274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.