New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	29 (0.710)	26/496	0.5	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 1978494	0 (0.000)					intergenic (‑297/+24)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB

AAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTAC  >  NC_000913/1397003‑1397487                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                          aaaaaCGATAACCAAATGGCGACGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATAAGTCAGTGGGAGAGATCTCACTAAAGACTGGGGATACCGCCTTAAAAGGCGAAGAAACGGTCTAAATAGGATGATGCAAGGAGTTTACGGGAGAAAAAATCGGCGCAAACATGAAGCAATGAAATGACAGAGTCAGCCGAGAAGAATGTACACGCTTATTCGCACATTCCCTAACTAATCAATGc                                                                                                                                                                                                                                            >  2:93511/1‑251 (MQ=11)   aaaCGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCGCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGTTCTAAATATGCTGATTCAAGGCATTTAGGGGTGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGTTAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGt                                                                                                                                                                                                                                          <  1:182195/251‑1 (MQ=11)                  ggCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCa                                                                                                                                                                                                                            <  1:206068/250‑1 (MQ=255)                    cGATGTTCTTCACGCTGGCCAACATGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCt                                                                                                                                                                                                                         >  1:334833/1‑251 (MQ=255)                                      ccAACCTGTTTCGGGCGGACCAAAGGATACGTCAGTTGGAGAAATCTCACTAAAAATTGGGGATAACGCCTGAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTGACGGGAGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGGCAGCCGAGAAGAATTTCCCTGCTTATTCGCACCTTCCCTAACTAATCAATGCGTGGATTGTAAATCCATCTAAGAGGTGAGGTTTGCag                                                                                                                                                                                                       <  2:433138/251‑1 (MQ=14)                                         aCCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGc                                                                                                                                                                                                    >  1:11472/1‑251 (MQ=255)                                               ttCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACa                                                                                                                                                                                               <  1:397897/250‑1 (MQ=255)                                                   ggCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGt                                                                                                                                                                                          <  2:384257/251‑1 (MQ=255)                                                        aCCAAATGATACGTCAGTGGGAGCGATCTCACTAAAAGCCGGGGCCAACGCCATAAACGGCGAAGAACCAGCCTAAATAGGCTGATTCAAGGAATTTACGGGAGACAACATCGGCACAAACATGAAGACATGAAATGACTGAGTCAGCCGAGAAGAATTTCACCGATTATTCGCACCTTCCCTAACTAATCAATGCATTGATTGTAACTCCAGCTAAGAGGAGAGGTTTTCAGAGCAGACAACGGTGAAAt                                                                                                                                                                                     >  1:254888/1‑251 (MQ=17)                                                                   cGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATCACGCCTTAAATGGCGAAGACACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTAtt                                                                                                                                                                          >  1:397990/1‑251 (MQ=255)                                                                           ggAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGtt                                                                                                                                                                  <  2:120170/251‑1 (MQ=255)                                                                                                    aTAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGcac                                                                                                                                         >  1:387652/1‑251 (MQ=255)                                                                                                        cGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAgg                                                                                                                                     >  1:187826/1‑251 (MQ=255)                                                                                                                        gaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTAt                                                                                                                     <  1:325782/251‑1 (MQ=255)                                                                                                                               tCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGACGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGaa                                                                                                               >  2:156516/1‑250 (MQ=255)                                                                                                                                                                                                             gagaAGCATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGCTTGTAAATCCCGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGGCGGTTGTGACTcgc                                >  2:414181/1‑251 (MQ=255)                                                                                                                                                                                                                   aaTTTCCCCGCTTATTCGCACCTTCCCTAACTCATCAATGCGTTGATTGTAAATCCACCTAAGAGGAGCGGTTTTCAGAGCAGACAACGGTGAACTGCCATGGGATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAACGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGGCGGTTTTGACTcgtgagacc                          >  1:246799/1‑244 (MQ=255)                                                                                                                                                                                                                        ccccGCTTATTCGCACCTTCCCGAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATcg                      <  2:317102/250‑1 (MQ=255)                                                                                                                                                                                                                          cctgttATTCGAGCCTTCCCTAACGAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGATCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGTATTACATCATGATTATGGCGAAACTGAAGGCAGGGAAAGGTAAGATATTTCTCTTTGGTTTGTTGGCGGTTGTCATTATTGCGGGGTCGGTTGTGGCTCGCTCGACCTTcggcg                   <  2:208482/247‑1 (MQ=255)                                                                                                                                                                                                                           cGCTTATTCGCACCTTCCCTAACTAATCAATGAGTTGCTTGTAACTCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACCAGGATTACATCATGATTATGGCGAATCTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGATTTCATTTTTGCGGCGTCGGTTGTGACTCGCGCGACCCTcggcgg                  >  1:132216/1‑251 (MQ=255)                                                                                                                                                                                                                                    gCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGa         <  1:228535/251‑1 (MQ=255)                                                                                                                                                                                                                                           cccTAACCAATCAATGCGTTGAATGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTTATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTGTTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTAc  <  1:258962/251‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                          AAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTATAGAACAGTAC  >  NC_000913/1397003‑1397487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.