Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,707,947 C→A intergenic (‑242/+669) dppA ← / ← proK dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,707,9470CA94.7% 61.7 / NA 19intergenic (‑242/+669)dppA/proKdipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (7/11);  total (8/11)
Fisher's exact test for biased strand distribution p-value = 4.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01

ATTCTGCTCCAATTGTGATGTTTGTTGTTTTAACCCTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACACACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCTGAGCGATTAATACCATGAACGCTAAAACGCACAGCGGAAAATGCCAGGGCCAGCCATAAGTAACGCAAAAAAAGATTTAAGCAAATA  >  NC_000913/3707707‑3708186
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                               
attCTGCTCCAATTGTGATGTTTGTTGTTTTAACCCTTTGCAGTGGGTTGTCGCTGCCTGACCTTGTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCGACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGAtt                                                                                                                                                                                                                                        <  2:16432/250‑1 (MQ=255)
                       gttgttTTAGCCCTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTg                                                                                                                                                                                                                <  1:142143/251‑1 (MQ=255)
                                 cccTTTGCAGGGGGTTGTCTCTGTCTGACTTTTTTGGTTTATTGCACGGTCGGGTCAACGTTATGAGGTGGGGATTCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTAGCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTTAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGaa                                                                                                                                                                                                      <  1:187378/251‑1 (MQ=255)
                                                                tttttgtttattgCCCGGTCGCGTCAACGTTATGAGGTGGAGATGCCGTACTACTTAACATCAGTGTAACAGTGCGGCTCCTCCATAAAATGCCCCTCGTGACCTAAAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACAGGGATTTACACCCACGGTGAGAATCCACAAACAAAATTTAAAAAAACTTCCAACAGCTATTTGAAGCAGAGAAATTTGTGCTAATCCAACATGACCAGacaaat                                                                                                                                                                       >  2:297790/1‑246 (MQ=255)
                                                                             cctggTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCATCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATAttt                                                                                                                                                          <  2:355536/248‑1 (MQ=255)
                                                                                            gTTATGAGGTGGGGATGACGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCGCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGGGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTAGTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGa                                                                                                                                           <  2:277849/251‑1 (MQ=255)
                                                                                                tGAGGTGGGGATCCCGTCCTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTCCAATCTATCAACAGAATGTGACAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTa                                                                                                                                        >  2:451843/1‑250 (MQ=255)
                                                                                                                 aCTAATTAACATCAGTGTAACAGTGCGGATCCGCCATAAAATGCCCCTCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAAGCCACAAACAAAGATTAAAAAAACGTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATAGTTAGCAACATTTGGTGATTAAGGTTTATGCATTTAAt                                                                                                                       <  2:429566/250‑1 (MQ=255)
                                                                                                                                                     tAAAATGCCCCTCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACa                                                                                                                                                                                                                        >  1:246539/1‑117 (MQ=255)
                                                                                                                                                     tAAAATGCCCCTCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACa                                                                                                                                                                                                                        <  2:246539/117‑1 (MQ=255)
                                                                                                                                                              ccTCGTGACCTACAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCTGAGCGATTAATACCAt                                                                         <  2:5179/251‑1 (MQ=255)
                                                                                                                                                                         aCAATCTATCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCTGAGCGATTAATACCATGAACGCTaaa                                                               >  2:12078/1‑250 (MQ=255)
                                                                                                                                                                                    aCAGAATGTGAAAACGTCAATACAGCCACCCGGGATTTACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCTGAGCGATTAATACCATGAACGCTAAAACGCACAGCgg                                                    >  2:146031/1‑250 (MQ=255)
                                                                                                                                                                                           gtgAAAAAGTCAATACAGCCAACCGGGATTTACAACAACGGTGAGAATCAACACACAAAGATTAAAAAAAATTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGATTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCTGAGCGATTAATACCATGAACGCTAAAACGCACAGCGGAAAATGcc                                            >  1:294122/1‑251 (MQ=255)
                                                                                                                                                                                                                         tACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCt                                                                                         <  1:289384/176‑1 (MQ=255)
                                                                                                                                                                                                                         tACACCAACGGTGAGAATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCt                                                                                         >  2:289384/1‑176 (MQ=255)
                                                                                                                                                                                                                                     gagaATCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTGGTGCTACTCCAACATGACCAGATCAATCAGCTTAATATGTAGCATCATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGCTGGATATCTGAGCGATTAATACCATGAACGCTAAAACGCACAGCGGAAAATGCCATGGCCAGCCATAAGTAACTCAAAAAAAGATTTAAGCAAata  <  1:215661/251‑1 (MQ=255)
                                                                                                                                                                                                                                        aaTCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGa                                                                                                                                           >  1:430353/1‑111 (MQ=255)
                                                                                                                                                                                                                                        aaTCCACAAACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGa                                                                                                                                           <  2:430353/111‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                               
ATTCTGCTCCAATTGTGATGTTTGTTGTTTTAACCCTTTGCAGTGGGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTCGGGTCAACGTTATGAGGTGGGGATGCCGTACTAATTAACATCAGTGTAACAGTGCGGATCCTCCATAAAATGCCCCTCGTGACCTACAATCTGTCAACAGAATGTGAAAACGTCAATACAGCCAACCGGGATTTACACCAACGGTGAGAATCCACACACAAAGATTAAAAAAACTTCAAACAGCTATTTGCAGCAGAGAAATTTGTGCTACTCCAACATGACCAGAACAATCAGCTTAATATTTAGCAACATTTGGTGATTAAGTTTTATGCATTTAATGAAAAAAATCTGAGGAAAAGGTGGATATCTGAGCGATTAATACCATGAACGCTAAAACGCACAGCGGAAAATGCCAGGGCCAGCCATAAGTAACGCAAAAAAAGATTTAAGCAAATA  >  NC_000913/3707707‑3708186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: