Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 156,591 T→C K98R (AAA→AGA)  yadN ← putative fimbrial protein YadN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913156,5910TC100.0% 90.7 / NA 27K98R (AAA→AGA) yadNputative fimbrial protein YadN
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (16/11);  total (16/11)

CTGTTTGGTCTGCGACGGCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTTTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCGGGTTTCACAGGTGTTATCAACAACCAGACCACTGATATTTAACTGACCGCCGTCCATATCAG  >  NC_000913/156352‑156816
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                 
cTGTTTGGTCTGCGACGGCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCt                                                                                                                                                                                                                         >  1:19109/1‑250 (MQ=255)
        gagctgactgCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATTCACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTTGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTTTTACCAAAGAAAACATAACCGAAGGTCATTCTAGCCGTGCTACCTGGAtt                                                                                                                                                                                                                <  1:395119/242‑1 (MQ=255)
             gACGGCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGAtt                                                                                                                                                                                                                >  2:395656/1‑246 (MQ=255)
             gACGGCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGAtt                                                                                                                                                                                                                <  1:395656/246‑1 (MQ=255)
             gACGGCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACAATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGAAATGTCGTTGTTCAAAGTCACTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTAATTCTAGCCGTGCTACCTGGAtt                                                                                                                                                                                                                >  2:395119/1‑246 (MQ=255)
                        cGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTtgctg                                                                                                                                                                                                <  1:293215/251‑1 (MQ=255)
                                     aaaaTCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAGTATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGa                                                                                                                                                                                   <  1:319132/251‑1 (MQ=255)
                                               aCAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGc                                                                                                                                                                                                                               >  1:338694/1‑197 (MQ=255)
                                               aCAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGc                                                                                                                                                                                                                               <  2:338694/197‑1 (MQ=255)
                                                  gcagATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGttt                                                                                                                                                                      >  2:234076/1‑251 (MQ=255)
                                                              gTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGCTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGcc                                                                                                                                                          >  2:305599/1‑251 (MQ=255)
                                                                                         tCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGATCTAGATTAACGCCGTATGATTGGATGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCATTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTCGCGCCAACGGAGACATTCAGTACGCCAGCATc                                                                                                                               >  2:348644/1‑251 (MQ=255)
                                                                                              aGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGCAGGTCATTCTAGCCGTGCTACCTGGCTTCGGATTTGCTTTGCTGCAGTCAACGGGGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGCttt                                                                                                                          >  1:1900/1‑251 (MQ=255)
                                                                                                ggTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTc                                                                                                                         >  1:77553/1‑250 (MQ=255)
                                                                                                    gttAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATCTTACCGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCa                                                                                                                     >  1:164678/1‑250 (MQ=255)
                                                                                                                       aTAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTgcagc                                                                                                   >  1:120904/1‑249 (MQ=255)
                                                                                                                                 cATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGAcc                                                                                        >  1:161135/1‑250 (MQ=255)
                                                                                                                                         ttGTGAAGAGCGATGTTCACGCCATCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGATCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGACAGCATCGATTTCACCACCGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGtt                                                                               >  2:391187/1‑251 (MQ=255)
                                                                                                                                           gtgtAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACCTGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAAAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTAc                                                                             >  1:408395/1‑251 (MQ=255)
                                                                                                                                           gtgtAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTa                                                                              <  2:333443/250‑1 (MQ=255)
                                                                                                                                                  gCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTc                                                                      <  2:120904/251‑1 (MQ=255)
                                                                                                                                                                  cAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCGTTGCTGTTACCAAAGAAAACAGAACCGAAGGCCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTGTAGCTTTAGCGCCAACGGTGTCATTCAGGACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCTGGTTTCACAg                                                      <  2:312610/251‑1 (MQ=255)
                                                                                                                                                                       gggTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCGGGTTTCACAGGTGtt                                                 >  2:20720/1‑251 (MQ=255)
                                                                                                                                                                                                     gTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCGGGTTTCACAGGTGTTATCAACAACCAGACCACTGATATTTAACTg                   >  1:114288/1‑251 (MQ=255)
                                                                                                                                                                                                       cccTTTGCTGTTACCAAAGAATACAGAACCGAAGGTCATTCTAGCCGTGTTACCTGGATTGGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGTTGTCATTCAGGACGCTAACATCTGTGTCACCAACGTTGGCGGGTTCCATGAGGATCAGACCATCCTTGTTACCGGCGTCAACGCGGGTTTCACATGTGTTATCAACAACCAGACCACTGATATTTAACTGa                  <  1:251757/250‑1 (MQ=255)
                                                                                                                                                                                                            tGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTCTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCGGGTTTCACAGGTGTTATCAACAACCAGACCACTGATATTTAACTGAccgcc             <  1:389276/250‑1 (MQ=255)
                                                                                                                                                                                                                      aaaGAAAACAGAACCGAAGGTCATTCCAGCCGTGCTAACTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGAGGCTGAAAGGTTTAGCTTTAGCTCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCGGGTTTCACAGGTGTTATCAACAACCAGACCACTGATATTTAACTGACCGCCGTCCATATcag  <  1:44702/251‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                 
CTGTTTGGTCTGCGACGGCACGAACGTAAGACGCTTTAAAATCATAAACAGCAGATTTTGTCGTTGCATCCAGGGCTTTAGTATACACATCGCCAGGGTTGTTAATTTGAACCTGTTTGATAGTGGAACCATCAATATTGTGTAGAGCGATATTAACGCCGTCAGATGGGTTGTTAATAGACATGTCGTTGTTCAAAGTCCCTTTGCTGTTACCAAAGAAAACAGAACCGAAGGTCATTTTAGCCGTGCTACCTGGATTCGGATTTGCTTTGCTGCAGTCAACGGTGATGCTGAAAGGTTTAGCTTTAGCGCCAACGGTGTCATTCAGTACGCCAGCATCGATTTCACCAACGGTTGCGGTTTGCAGCAGGATCAGACCATCCTTGTTACCGCCGTCAACGCGGGTTTCACAGGTGTTATCAACAACCAGACCACTGATATTTAACTGACCGCCGTCCATATCAG  >  NC_000913/156352‑156816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: