| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,808,243 | C→T | intergenic (‑5/‑297) | rirA ← / → waaA | small regulatory RNA RirA/KDO transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,808,243 | 0 | C | T | 95.8% | 80.5 / NA | 24 | intergenic (‑5/‑297) | rirA/waaA | small regulatory RNA RirA/KDO transferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (12/11); minor base A (1/0); total (13/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAACGGGAAAAGTAATGGTAAAGCC > NC_000913/3807997‑3808489 | ggTGTACTGATAAAGCATCATATCGATTTTTGCATCAGTATAATTCTGCTTGGGCGTACTGATGACAGGAGTATTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCCCGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCTCTTACTTTGACGTGTTAgt < 2:151042/251‑1 (MQ=255) aaaGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCAtttct > 2:191979/1‑251 (MQ=255) caTATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCgcag < 2:205093/251‑1 (MQ=255) atatCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCGTTCgcagc < 2:160115/251‑1 (MQ=255) gATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGAttt > 2:6299/1‑251 (MQ=255) ttCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGATAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTtat > 1:208766/1‑250 (MQ=255) gAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCATCAATCCGACCCGAATGATTTTTATACACaaaa < 1:1151/250‑1 (MQ=255) gAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACaaaa < 1:72199/250‑1 (MQ=255) gAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAat < 1:191979/251‑1 (MQ=255) agtTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATc > 2:62703/1‑250 (MQ=255) tatCGCATCTTTATGACCAGGAATTTTCGAAATGGCTTTTCCACTAGCGTCTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGACAAACGCACGCTACCGCCCCAGGCTCAACAGCTACATGAATACTGATAACGCACTTCCTTTGACGTGTTAGTGTATCCTTTCTTTAGCAGCAATCCGACCCGAATGATTTTTATACAAAAAATATACTTTAATAATAAAAATCAAATCGATAAAAAATAGCATTTc > 2:227669/1‑251 (MQ=255) gCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGAt > 1:195578/1‑250 (MQ=255) aCCAGGATTTTTCGACATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAGGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGCTTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATACAAAATAGCATTTCGATAATGTCAGTACg > 2:22616/1‑251 (MQ=255) aCTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCg < 2:1897/251‑1 (MQ=255) gCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGtt > 1:123829/1‑251 (MQ=255) tttGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGa > 2:237490/1‑250 (MQ=255) gtgATTTTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATATACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTATGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGc < 1:52264/250‑1 (MQ=255) gCAGAAACAAGCACGCTACAGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGAGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAACAAATGa > 2:161092/1‑250 (MQ=255) aCGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGc > 1:270212/1‑250 (MQ=255) tACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGAAGCGGc > 1:236532/1‑246 (MQ=255) aCCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATc < 1:22616/250‑1 (MQ=255) aGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTAACATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGCCCAAACTGAAGCTAt < 2:59946/251‑1 (MQ=255) cACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAACGGGAAAAGt < 1:62703/251‑1 (MQ=255) cGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGACTGCTTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTCCGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGACGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAACGGGAAAAGTAATGGTAAAGcc > 2:12957/1‑251 (MQ=255) | GGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAACGGGAAAAGTAATGGTAAAGCC > NC_000913/3807997‑3808489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |