| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,190,264 | IS2 (+) +5 bp | coding (180‑184/672 nt) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1190264 = | 0 (0.000) | 33 (0.810) | 32/486 | 0.3 | 100% | coding (184/672 nt) | phoP | DNA‑binding transcriptional dual regulator PhoP |
| ? | NC_000913 | = 1651548 | NA (NA) | noncoding (706/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1190268 | 0 (0.000) | 17 (0.420) | 14/490 | 1.2 | 100% | coding (180/672 nt) | phoP | DNA‑binding transcriptional dual regulator PhoP |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
CGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCA > NC_000913/1651311‑1651793 | cGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACg > 1:116077/1‑251 (MQ=34) gAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCtgtttg < 1:294068/251‑1 (MQ=40) gagagCTTCGTGAAAACGATAAAGCGTGACTACAGCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCAGTATAACGAATGGCATCCGCAGAGTGCGCTGGGTTATCGCTCGCCGCGGGAATATCGGCGGCAGCGGGCTTTGAATGGGTTAAGTGATAACAGATGTCTGGAAATGTGGGGTCAAATCCTCAGGTGAACTACGCTCCTCTGTTTGTTACGc < 1:186478/249‑1 (MQ=14) gagCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATa < 2:280880/251‑1 (MQ=255) cGTGAAAACGATAAAGCGTGACTACATCAGTATCATTCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGATCTTCGCTCCTCTGTTTGTTACGCAATAAAAAc < 2:96181/250‑1 (MQ=255) aaCGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGtt < 1:66098/251‑1 (MQ=255) cGATAACGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGtttt > 1:375290/1‑251 (MQ=255) gACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCa > 1:97310/1‑250 (MQ=255) cTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaa > 1:142926/1‑250 (MQ=255) acagcAGTATCATGCCCAACCGATACGGGTTAACGGCAGCAAAGAATCTTGGATAGGTGTTCGAGCATTATAACGAATGGCAGCCGCAGAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGTGGGCTTGTAATGGGTTAAGTGAGAAGTGAGGTCTGGAAATATAGGGGTTAAGCTACAGGTGAATTTCACGGCTCTGTTTGTTACGCAGTAAAAGATGGTGTTTGCGACTGTGCAAAACa < 2:427931/247‑1 (MQ=2) gTATCCTGCCCAAACCCGACGGGTTAACGGCAGCAAAAAAACTAGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCCTAGTGCGATGGGTTATCGCGCGCCACGGGAATATCTGCGGCAGCGGGCTTGTACTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCAACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGGTTTCGACTATGCAAAACAGTTTcc > 2:365763/1‑251 (MQ=18) catgcaaaaaccaacagggTTCACGGCAGCAAAGAACCTTGCACACGCGTTCGAGCATTATAAGGAATGGCATCCACCTAGTGCGATGGGATATCTCACGCCACGAGAATATCAGAGGCAGCGGGCTTGTCCTGGGTTAAGTGATAACAGGTGTCTGGCAATCAAGGGGCAAATCCATAGGTGAACTACGCTCCTCTCTTTGTTACGAAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCcctcc > 2:406290/17‑251 (MQ=255) cacAGACGGGTTAACGGCAGCTAGGGTCCTTGCTGGGGGGTTCGATCTGTATAGGTAATGGCAGCCGCATAGTGCGCTGGGTTATTGCGCGCCACTGGGATATCTGCGGCGGCGTGCTTTTAAGGGGTGTAGTGATAGCAGATGTGTGGAAATATAGGGGCAAAGCCTCATGTGCACTGTGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGGTTTGGACTAGGCATAACAGCTTCCctcctctttcaaa < 2:371288/249‑8 (MQ=255) gggTTAACGGCAGCAAAGAACCTTGCAGAGACGTCCGCGCATTATAACGAATAACATCCGCATAGTGCGATGGGTTATCGCACGACACCGGACTATCTGCCGCAGAGGAAATGTAATGGGATAAGAGATAACAGATGCATGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTAGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaa > 1:421873/1‑250 (MQ=21) aaCGGAAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAAttt > 1:435237/1‑251 (MQ=255) tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGATATCGCTCGCCACGGGAATATCTGCGGCAGAGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAACAATTTGGTGAGGCCCGACAAGATTTAACCATaa > 2:49564/1‑250 (MQ=255) aTTATAACGAATGACATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAACGGGCTTGTAATGGGTTAAGTGCTAACAGATGTCTCGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGCCTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGCTTTAACCATAAAAGAACt > 2:436330/1‑251 (MQ=255) aCGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGa < 1:107143/251‑1 (MQ=255) cgcTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGGCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTgaaaga < 2:351322/251‑1 (MQ=255) gggAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATc < 1:384047/251‑1 (MQ=255) tGGGTTAAGTGATAACAGATGACTGGAAATATAGGGGCAAATCCACAGGAGAACTACGCTCCTCTGTTTGTTACGCACTAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGACAAAACCTCACTCAACACATACCGTGCCGTCATCaa > 2:17676/1‑250 (MQ=255) aGTGATAACAGATGTCTGGCAATATATGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTATCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAAAATTAACCATAAAAGAACAGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCACCACATACCGGGCCGTCATCAAAAATATcc < 2:362567/251‑1 (MQ=255) gATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCATCACATACCGTGCCGTCATCAAAAATATCCTGa < 1:253342/251‑1 (MQ=255) aaCAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCGCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCa < 1:92047/251‑1 (MQ=255) aaaTATAGGGGCAATTCCACAGGTTAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTTGAAAAATTTGGTGATGCCCGACAAGATTTAACCATAAAAGAACTGTCTGAAAAATTTCTGTCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCTACACATACCTGGTCGGTATCAAAAATATCCTGAGCTTACTCGGTGaaaa < 2:291692/251‑1 (MQ=255) aaTCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCTCTCAACACATACCTTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCa < 1:49564/251‑1 (MQ=255) | CGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGCCTCA > NC_000913/1651311‑1651793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |