Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,913,392	IS2 (–) +5 bp	coding (256‑260/2235 nt)	relA ←	GDP/GTP pyrophosphokinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2913392 =	0 (0.000)	32 (0.780)	30/490	0.4	100%	coding (260/2235 nt)	relA	GDP/GTP pyrophosphokinase
	?	NC_000913	= 2997691	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region
*	?	NC_000913	= 2913396	0 (0.000)	54 (1.320)	51/490	0.1	100%	coding (256/2235 nt)	relA	GDP/GTP pyrophosphokinase
	?	NC_000913	2996361 =	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

CTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCAC  >  NC_000913/2913147‑2913635                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    gcttacgccagagaaataactggctggctgcttctccatgttgccgggcaacgagggagaccgtcatccccggtgcaaagttctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccagtgactagtctaaaaactagtattaagacgatctcttatttaagggatagggggtgtttggagattcagtgggccattgtaGCATc                                                                                                                                                                                                                                                 >  2:23172‑M1/246‑250 (MQ=255)    tacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCg                                                                                                                                                                                                                                               >  2:360930‑M1/243‑249 (MQ=255)    ccGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtgg                                                                                                                                                                                                                                              >  2:289622‑M1/1‑247 (MQ=255)     cGGCGCACATTTTATTGCGCGTAGGTGAGTAATCCGCTCCGCCAGTTTAAGGCATACGCAGCGAAAATCATCGACCATCGCCAATAACTTCCGGCAAAGTTTACCGACCTTTTCGGAGAAAACAGAATCAGTGTGCGTCGCTTCCAGCGGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATctggat                                                                                                                                                                                                                                            <  2:291408/251‑6 (MQ=255)       gccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGcc                                                                                                                                                                                                                                             <  1:422889‑M1/9‑1 (MQ=255)               tttACTTCGCGCAGATGACCAATACCCTCCGCCAGTTTGATGCCTACGCAGCCAAAATCATCGACCAACGCCAATAACATCCGGCGAACGTTACCAACATTTCCGGAGGAATCAGCATCAGTGTGCGTCGCTTGCAGTTGCCGGTTCGCCGCCATATCTCGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCCCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccct                                                                                                                                                                                                                                    <  1:113056‑M1/249‑14 (MQ=255)                   cTTCGCGCAGATGAGCAATCCGCTCCGCCAGTTTGATGACTACGCAGCGCAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGCCCTGTTCGGAGGCAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCCTCTCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCCCGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatattt                                                                                                                                                                                                                              >  2:27342‑M1/1‑232 (MQ=255)                     tCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGCCCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatattt                                                                                                                                                                                                                              <  1:255525‑M1/249‑20 (MQ=255)                      cgcgCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCAAAAATCACCGCCCACCGCCAATAACATCCGTCGAACGTTATCGACCTTTGCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCGGGCGGACCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttcca                                                                                                                                                                                                                           <  1:270648‑M1/251‑23 (MQ=255)                           aGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacat                                                                                                                                                                                                                      >  2:30365‑M1/1‑224 (MQ=255)                           aGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacat                                                                                                                                                                                                                      >  1:94238‑M1/1‑224 (MQ=255)                              tGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGCCTACGTTGGCATCtggatttgcccctatatttccagacatctg                                                                                                                                                                                                                   >  1:61489‑M1/1‑221 (MQ=255)                                 gCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGCCCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgtt                                                                                                                                                                                                                 >  1:420347‑M1/1‑218 (MQ=255)                                   accatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCgtgt                                                                                                                                                                                                              <  1:406960‑M1/40‑1 (MQ=255)                                       cGCTCCGCCAGTTTGATGACTCCGCAGCGAAAACCATCGCCCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTGGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcactt                                                                                                                                                                                                          <  1:347282‑M1/251‑40 (MQ=255)                                       cGCTCCCCCAGTTTGATGCCTAGGCAGGAAAAAGCACCGCACATCGCAAATAACCTCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCTCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcactt                                                                                                                                                                                                          <  2:383830‑M1/251‑40 (MQ=255)                                        gCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcactt                                                                                                                                                                                                          >  1:414627‑M1/1‑211 (MQ=255)                                                  tttGATGACTACGCAGCAAAAATCATCGACCACCGCCAATAACACCCGGCGAACGTTATCGACCTTTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattac                                                                                                                                                                                                <  1:30365‑M1/250‑50 (MQ=255)                                                        gaCTACGCAGCGAAAATCATCGACCATCGCAAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccg                                                                                                                                                                                         <  1:75034‑M1/251‑57 (MQ=255)                                                                          ttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctcGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCAtct                                                                                                                                                                       <  1:268741‑M1/79‑1 (MQ=255)                                                                            caaagctctgcttaacaattgcgatcttttcctgtgtggtactccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactagcacttatttaagtgatatgggttgtcttgagattcagggggcctgtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCAtctc                                                                                                                                                                      >  1:177773‑M1/171‑250 (MQ=255)                                                                             gacaagcacgaataacatccggAGAACATTATCGCCCTGTTGGGGGGAAATAGAACGAGTGTGCGTCGCTTACAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccatacatctgttatcacgtaacccaatacaagcccgctgccgcagatattcccgtgg                                                                                                                                                                    <  1:276879‑M1/241‑78 (MQ=255)                                                                             gACCAACGTCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGACACAGAATCAAAGTGCGTCGCTTTCAGCGGGCGAATCGCCGCCATATCACGCAAGCCGTGAATAAGGTTAACGCCCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgctcctctatttccagacatctgttatcacttaacccattacaagcccgtcgccgcagatattcccttgg                                                                                                                                                                    >  2:367125‑M1/1‑174 (MQ=255)                                                                                    tgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACg                                                                                                                                                             <  1:396073‑M1/89‑1 (MQ=255)                                                                                    gCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcg                                                                                                                                                              >  1:365349‑M1/1‑167 (MQ=255)                                                                                        gaacaattgcgatctttgcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttcgccaattactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtcgaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCcac                                                                                                                                                         >  2:422889‑M1/159‑251 (MQ=255)                                                                                          aaCATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccc                                                                                                                                                       >  1:239744‑M1/1‑161 (MQ=255)                                                                                           caattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAAt                                                                                                                                                      <  1:297350‑M1/96‑1 (MQ=255)                                                                                            cATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCCCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccag                                                                                                                                                     <  1:84127‑M1/251‑93 (MQ=255)                                                                                            aattgcgttcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAAt                                                                                                                                                      <  2:44820‑M1/96‑1 (MQ=255)                                                                                                gcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACa                                                                                                                                                  <  2:186388‑M1/100‑1 (MQ=255)                                                                                                cGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTCACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgc                                                                                                                                                  >  1:267480‑M1/1‑155 (MQ=255)                                                                                                    gaatgttagcgccgtggtcggagaaaacagaatcaGTGTCGGTCGCTTGCAGCTGGCGGTGCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacagctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactat                                                                                                                                             <  2:146846‑M1/234‑101 (MQ=255)                                                                                                         tcctttgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctcaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGACATc                                                                                                                                        <  2:112953‑M1/110‑1 (MQ=255)                                                                                                          ccggtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTTTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATcc                                                                                                                                       >  2:406960‑M1/141‑251 (MQ=255)                                                                                                              gACCTGTTCGGAGGAAACAGAATCAGTGTTCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcca                                                                                                                                   <  1:198140‑M1/251‑111 (MQ=255)                                                                                                               cccggttcgGAGGAAACAGAATCAGTGTGCGTCCCTTTCAGCTGGGGGACCGCCGACATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTTCCGACGCTCTCACGCAGCACATCTTCGCTGACTTCGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttgacccattgcaagcccgctgccgcagatattcccgtggcgagcgatatcccagcgcactatgcggatgccat                                                                                                                                  <  1:158478‑M1/247‑112 (MQ=255)                                                                                                                  tGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcg                                                                                                                               >  1:315825‑M1/1‑137 (MQ=255)                                                                                                                      gccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGc                                                                                                                           <  1:295819‑M1/123‑1 (MQ=255)                                                                                                                       ccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCg                                                                                                                          <  1:53202‑M1/124‑1 (MQ=255)                                                                                                                           gaAACAGAATCAGTGTGCGGCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttgtaatgc                                                                                                                      <  1:115329‑M1/251‑124 (MQ=255)                                                                                                                               gtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGc                                                                                                                  <  1:13445‑M1/132‑1 (MQ=255)                                                                                                                                     ccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATTTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGAc                                                                                                              >  2:297350‑M1/114‑249 (MQ=255)                                                                                                                                     cAGTGTGCGTCGATTTCCGCTAGCAGATCGCCCCCATATCACGCACGCCGTGAATCAGGTTAACGACCGACTTACCGACGCTCCCACGCCGCACATCTTCGCTGCCTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttcacccattacaagcacgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcct                                                                                                            >  2:219908‑M1/1‑118 (MQ=255)                                                                                                                                        tgtgCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctg                                                                                                         >  1:408163‑M1/1‑115 (MQ=255)                                                                                                                                         gtgCGTCGCTTTCAGCTGGCGGATCGCCGCCATCTCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgc                                                                                                        >  2:13003‑M1/1‑114 (MQ=255)                                                                                                                                          gccgctctaccgaccgggcggtgcgccgccatatcacgcacgccgtgaataaGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                       <  2:123178‑M1/228‑139 (MQ=255)                                                                                                                                             agaacatcaattatcttttctccaatgactagtctaaaacctagtattaagactatcacttattgcagtgatattggtggtccggcgcttcagggggccagtctaGCAGCCGCCAGAGTGAAAAGCAGCGCCTCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCGCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCATCTGTTTCATACAATACGCCCa                                                                                                    >  2:256186‑M1/106‑251 (MQ=255)                                                                                                                                                gCTTGCAGCTGGCGGATCGCCGCCATAGCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttc                                                                                                 <  1:256697‑M1/251‑145 (MQ=255)                                                                                                                                                   ttCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctt                                                                                               <  1:292662‑M1/250‑147 (MQ=255)                                                                                                                                                    aaatcatctgttctcaaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAAGGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCg                                                                                             >  2:41776‑M1/99‑251 (MQ=255)                                                                                                                                                          ggCGGACCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca                                                                                                       >  1:123178‑M1/1‑97 (MQ=255)                                                                                                                                                             gttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCAc                                                                                    >  1:431209‑M1/90‑251 (MQ=255)                                                                                                                                                               aTCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcacctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaac                                                                                  >  1:407031‑M1/1‑92 (MQ=255)                                                                                                                                                                 cgccgcCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatgtgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacc                                                                                 <  1:271586‑M1/250‑161 (MQ=255)                                                                                                                                                                       cATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctgg                                                                          >  1:367483‑M1/1‑84 (MQ=255)                                                                                                                                                                          tagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTct                                                                       <  1:214245‑M1/175‑1 (MQ=255)                                                                                                                                                                            cacgcacgACGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACAGCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgcggccgcagatatccccgtggcgagcgatatcccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtcgggtttg                                                                      <  1:347110‑M1/250‑172 (MQ=255)                                                                                                                                                                              ctcaaaactaggattaagactatcacttatttaagtgatattggttgtatggagattaagggggccagtctaGCATCAGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTGAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGATGCAGACAATACGCCCAGGTTTAGGCTAAGCACTCACACGActtctgact                                                                   <  2:305961‑M1/179‑4 (MQ=255)                                                                                                                                                                                aaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTctggct                                                                   >  2:295819‑M1/71‑249 (MQ=255)                                                                                                                                                                                   aactcgtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTAGCTGGTa                                                               <  1:67740‑M1/183‑1 (MQ=255)                                                                                                                                                                                     ctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAAt                                                             <  1:384575‑M1/185‑1 (MQ=255)                                                                                                                                                                                     cGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatac                                                            >  1:102343‑M1/1‑70 (MQ=255)                                                                                                                                                                                       agtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATa                                                            >  1:92939‑M1/64‑249 (MQ=255)                                                                                                                                                                                        gtattaaggctatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCAGCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATAccc                                                         >  1:383700‑M1/63‑251 (MQ=255)                                                                                                                                                                                            aaGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgta                                                     <  1:65654‑M1/251‑189 (MQ=255)                                                                                                                                                                                                 tAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtca                                                 <  1:52280‑M1/250‑193 (MQ=255)                                                                                                                                                                                                  aaCGACCGTCTTACCGCCGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccttggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggctctttgctgccgttaacccgtctggtttgggcatgatacagctcggcagcgc                                               >  2:329600‑M1/1‑57 (MQ=255)                                                                                                                                                                                                  aaCGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttatcccgtctggtttgggcatgatac                                                            <  1:329600‑M1/238‑182 (MQ=255)                                                                                                                                                                                                          atttaagtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATACCCAGACTTGCGATCCAttt                                        >  1:260638‑M1/45‑250 (MQ=255)                                                                                                                                                                                                          acTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgcgcgataacccagcgcactatgcggatgccattcgttataatgctcgcacgcctctgcaaggctctttgctgccgttaacccgtctgggttgggcatgatactgatgtagtcacgctttatcg                                       >  2:367612‑M1/1‑49 (MQ=255)                                                                                                                                                                                                              aCCGACGCTCTCACGCAGCACATCTTCGCTGACCACGTTGGCATCtggatttgcccctatatttcaagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtcgtcacgctttatcgtttt                                   >  1:394332‑M1/1‑45 (MQ=255)                                                                                                                                                                                                                gtgatattggttgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATACCCAGACTTGCGATCCATTTATCCGGa                                 >  1:119137‑M1/39‑251 (MQ=255)                                                                                                                                                                                                                        tcACGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctc                         >  2:185335‑M1/1‑35 (MQ=255)                                                                                                                                                                                                                        gggtgtctggagattcagggggccagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACCCCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAAtt                          >  2:345685‑M1/31‑250 (MQ=255)                                                                                                                                                                                                                           cGCAGCACATCTTCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctct                      <  1:401220‑M1/251‑220 (MQ=255)                                                                                                                                                                                                                                       tCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattcc              <  1:289622‑M1/247‑228 (MQ=255)                                                                                                                                                                                                                                       tCGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccatgacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccg             <  2:414627‑M1/248‑229 (MQ=255)                                                                                                                                                                                                                                        cGCTGACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttac         <  1:180479‑M1/251‑233 (MQ=255)                                                                                                                                                                                                                                           tGACTAAGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggctgccattcgttataatgctcgaacgcctctgcacggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactct      >  2:199178‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                            gACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccggtaacccgtctggttt                                                                       <  1:332166‑M1/185‑171 (MQ=255)                                                                                                                                                                                                                                            gACTACGTTGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgatcgaacgcctctgcaaggttctttgctgccgttaacccgtctggttt                                                                       >  2:332166‑M1/1‑15 (MQ=255)                                                                                                                                                                                                                                               cagtctaGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGCGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCATGCATCTGTAGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTATGGCTGGTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCAc  <  1:299988‑M1/244‑1 (MQ=255)                                                                                                                                                                                                                                               cagtctaGCATCAGCCAGAGGGAAAAGCAGCGCCGCACGCCCCGTGTCAATGCCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACAACACGCCACAATAAAAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATACCCAGACAAGCGATACATTTTTCCGGATCAAATTCACCCGCCTTCTTGCTATGTGCAc  <  2:18436‑M1/244‑1 (MQ=255)                                                                                                                                                                                                                                                    tGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttc                                  <  2:25138‑M1/214‑208 (MQ=255)                                                                                                                                                                                                                                                    tGGCATCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttc                                  >  1:25138‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    CTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAATCATCGACCATCGCCAATAACATCCGGCGAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCGTCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACCATCTCAACACCACGCCACAATAACAGACTGGCATCCGGATGCCCCTGCGTCTGTTGCAGACAATACGCCCAGGTTTCGGCTAAGCACTCACACGACTTCTGGCTGGTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCAC  >  NC_000913/2913147‑2913635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.