Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	3,960,601	IS2 (+) +5 bp	intergenic (‑788/‑72)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/ATP‑dependent DNA helicase Rep

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3960601 =	0 (0.000)	46 (1.130)	44/488	0.1	100%	intergenic (‑788/‑76)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/ATP‑dependent DNA helicase Rep
	?	NC_000913	= 4499511	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region
*	?	NC_000913	= 3960605	0 (0.000)	52 (1.280)	48/488	0.1	100%	intergenic (‑792/‑72)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/ATP‑dependent DNA helicase Rep
	?	NC_000913	4498181 =	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

TAAAGGTCACCGCCGCAATGTGCCGCGCCTGATAACCGCAACCGCGGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3960842‑3960601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCA  <  NC_000913/4499511‑4499265                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aaaagccgACCGCCGAAATGTGCCGCGCCTGATACCCGAAACCGCGGATCAGAGGG‑GCGATTTTATGGGGGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGC                                                                                                                                                                                                                                                <  2:13255/243‑1    AGGTCACCGCCGCAATGTGCAGCTCCTGATAACCGCAACCGCGGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACCGCTTGTTGTTGGCCGGGGTTTAGACGCATCGGGGTATTGCTCACTCTTCGACCGGGGGGAGGATTGTAGCAGAATCGCATTAGAATTTGACCGCGTGTAAGCCGCTGGATTTGCCCC                                                                                                                                                                                                                                             >  2:252637/1‑251       TCACCGCCGCAATGTGCCGCGCCTGATAACCGCAACCGCGGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATATTCGAACGGGCGGAGGATTGTAGCAGAAGCGCATTTGAATGTGAACGCGTGTAAGCCGCTGGATTTGCCCCgat                                                                                                                                                                                                                                          >  2:9352/1‑248        CACCGCCGCAATGTGCCGCGCCTGATAACCGCAACCGCGGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCCGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGAGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTAT                                                                                                                                                                                                                                          >  1:64382/1‑250                    gtgccatcgctacTAACCGCAAGCGCGGTTCAG‑TGGTGCGATTTTTTTTGGGAAAACACGATTTTTTCGGTAACCCGCGCCTGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCGTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACAa                                                                                                                                                                                                                              <  2:344242/237‑2                                         ACCGCGGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGTGGCCGGTAACGAATTCGCCAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGCATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAC                                                                                                                                                                                                        >  1:322993/1‑251                                              GGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGATCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGAACGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCC                                                                                                                                                                                                   >  1:125886/1‑251                                               GATCAGATGG‑GGGTTTTTATTGTGGATACCCCGAGTTTTACTGGAACACGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGATCGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTCACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCATACATCTGTTATCACTTATCCCATTACAAGCCC                                                                                                                                                                                                  <  1:157154/251‑1                                               GATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCTGCACCAGGCCGGGGCCGGTACCGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTCACCCATTACAAGCCC                                                                                                                                                                                                  >  2:266918/1‑251                                                   AGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGACTTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTG                                                                                                                                                                                              >  2:118358/1‑251                                                                TTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTC                                                                                                                                                                                  >  1:350837/1‑251                                                                        GATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGGGGCG                                                                                                                                                                          >  2:343346/1‑251                                                                                          GGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCAAGCGCAC                                                                                                                                                        >  1:49876/1‑251                                                                                               CCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC                                                                                                                                                   <  1:387046/251‑1                                                                                                    CCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATG                                                                                                                                              >  1:43933/1‑251                                                                                                        CCAGCACCAAGCAGGGGCAGGTTACGCATTCGAAAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCACTCTTCGACCGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGCGACAGCGAGTAAGCCGCTGGATTTGCCCCTATATTTCCAGCCATCTGTTATCACTTAACCAATTACAAGCCCGCTGCAGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTCTGCGGATGCCAT                                                                                                                                          >  2:418646/1‑251                                                                                                               CAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTAT                                                                                                                                   <  1:282598/251‑1                                                                                                                  GCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAAT                                                                                                                                <  1:213364/251‑1                                                                                                                   CAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATG                                                                                                                               <  2:71798/251‑1                                                                                                                               ACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTC                                                                                                                   <  1:242281/251‑1                                                                                                                               ACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTC                                                                                                                   >  1:202912/1‑251                                                                                                                                   ATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGC                                                                                                                >  1:191509/1‑250                                                                                                                                      CGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGG                                                                                                            >  1:133840/1‑251                                                                                                                                       GACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCCCTATGCGGATGCCATTAGTTATAATGCTCGAACGCCTCTGCAAGGT                                                                                                           >  1:227076/1‑251                                                                                                                                           GCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAAGTTCTT                                                                                                       <  1:118358/251‑1                                                                                                                                                    gGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGT                                                                                              <  2:59685/250‑1                                                                                                                                                                AGACGCATAGGTCTATTGCTCAAGCTTGGAACGGGGGTAGGATTGTAGAAGAATCGCATTTGAGTGCGACCGCGTGTAAGCAGCTGGAGTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTCCAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCCCTATGCGGATGCCATTCGTTATAATGCTCAAAAGCCTCTGCAAGGTTCTTTGCTGCCGTTCACCCGTATGG                                                                                  >  2:428475/1‑251                                                                                                                                                                  ACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGCTTGTAGCCGAATCGCATTTGAATGTCACCTCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCTCTGCCGCAGATATTCCCGTGGCGCGCGATAACCCAACGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTT                                                                                >  1:390162/1‑251                                                                                                                                                                       TAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGCATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGC                                                                           >  1:287127/1‑251                                                                                                                                                                                TGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCATACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACT                                                                   <  1:149180/250‑1                                                                                                                                                                                TGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGACTGGTTTGGGCATGATACTG                                                                  >  1:387790/1‑251                                                                                                                                                                                   TCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATG                                                               >  2:242606/1‑251                                                                                                                                                                                     AATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATGTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTA                                                             <  1:73559/251‑1                                                                                                                                                                                      ATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGT                                                              >  1:233381/1‑249                                                                                                                                                                                       TCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGT                                                           >  1:402596/1‑251                                                                                                                                                                                           CGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACG                                                       >  1:124658/1‑251                                                                                                                                                                                            GAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGC                                                      >  2:320236/1‑251                                                                                                                                                                                                GGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTA                                                  <  1:213800/251‑1                                                                                                                                                                                                  GGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATC                                                <  2:133840/251‑1                                                                                                                                                                                                       tgcTTGTAGCAGAATCGCATTTGAATGTGACCGCGAGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTCTCACTTCACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTCGCGAGCGATAACCCAACGCACTATGCGGATGCCATTCGTTATAATGCTCGAACTCCTCTGCCAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGCTGTAGTCAAGATTTATCGTTTT                                           >  2:126104/4‑251                                                                                                                                                                                                        GATTGTAGCAGAATCGCATTTGAAGGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTGCCAGACATCGGGTATCACTTAACCCATTAAAAGCCCGTTGCCGCAGATAGTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCAGTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTGATCGGTTTC                                          <  2:416929/251‑1                                                                                                                                                                                                          TTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTG                                                                              >  1:110193/1‑213                                                                                                                                                                                                          TTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTG                                                                              <  2:110193/213‑1                                                                                                                                                                                                              AGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAA                                     <  1:276136/250‑1                                                                                                                                                                                                                                            TAAGCCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTC      >  1:132774/1‑251                                                                                                                                                                                                                                                CCGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCGGCCGCAGAGATTCCCGTGGCTAGCGATATCCCAGCGCACTAGTCGGATGCCATTCGGTATAATGCTCGAACGCCTCGGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTGTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCA  <  1:418646/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TAAAGGTCACCGCCGCAATGTGCCGCGCCTGATAACCGCAACCGCGGATCAGATGG‑GCGATTTTATTGGTGATAACACGAGTTTTACCGGAACCCGCGCCCGCCAGCACCAGGCAGGGGCCGGTAACGAATTCGACAGCTTGTTGTTGGCCGGGGTTTAGACGCATAGGTGTATTGCTCAATCTTCGAACGGGGGGAGGATTGTAGCAGAATCGCATTTGAATGTGACCGCGTGTAAGCCGCt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3960842‑3960601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCA  <  NC_000913/4499511‑4499265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.