| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,504,498 | T→C | G147G (GGT→GGC) | nanX → | sialic acid transporter NanX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,504,498 | 0 | T | C | 95.7% | 77.3 / ‑6.5 | 23 | G147G (GGT→GGC) | nanX | sialic acid transporter NanX |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (6/16); minor base G (0/1); total (6/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
GTGGTTTTTTTGGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGTGGGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGTTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAATATAAGGATAAATCAACATTTTTGTCTGTCTTCAGAAAACCACATCTTTCAATCTCTATGATCGTTTTCCTCGTCTGTTTTTGTCTAT > NC_000913/4504257‑4504742 | gtggtTTTTTTGGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGAGGATGTGTGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTATAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGTTAAGTGGGTGTTCTGtt < 2:340371/251‑1 (MQ=255) aTAAATATGGTCGTAAGCCAATGATGATGTGGGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATATTAAATCTAAAGCTAGTGATTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAaat > 2:518306/1‑250 (MQ=255) tGGTCGTAAGCCAATGATGATGTGGGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTc > 1:5280/1‑251 (MQ=255) atgatgatgTGGGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGt < 1:523821/251‑1 (MQ=255) gggCAAGTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATACCTCAGTTTGCTGAAGTATatggatg < 2:383275/250‑1 (MQ=255) gTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTGTATAgg < 1:401475/251‑1 (MQ=255) tAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGtt < 1:351840/250‑1 (MQ=255) ggTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGCTGTCTGGTGCATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTCAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACt > 1:313033/1‑251 (MQ=255) gCTACAAACTTATATATGCTCGCAGTTTGCCGGTTTATTGTTGGCTTAGGGATGTCGGGTGAATATGCAGGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATGATGGCGGCACAAATAATCCCGCAGTTTTCTGAAGTAGATTTATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTc < 2:313033/250‑1 (MQ=255) cAGTTTGCCCTTTTCTTGCTAGCTTAGGGATGCCTGGAGAATCTGCATGTGCTTAAAATTATGCGGTAGAAAGTTGGCCTAAAAATCTCCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGCTGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGATTTACTAGTTCTTTGGTTCAGAAAAAGTGCTcc > 2:514543/1‑250 (MQ=255) ttGCCGATTTATAGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGaa > 2:201683/1‑250 (MQ=255) gtcGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTTGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATATGCCTGTTTCCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCatacagt < 2:291778/249‑7 (MQ=255) tgttgGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGTATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTgg < 2:186778/250‑1 (MQ=255) gttgGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGAt < 2:5280/251‑1 (MQ=255) ggCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCttttttt > 2:249115/1‑180 (MQ=255) ggCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCttttttt < 1:249115/180‑1 (MQ=255) aTGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGGTAAata < 1:142958/251‑1 (MQ=255) gTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAAtata < 1:426851/251‑1 (MQ=255) gTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGGTGGAAATAGTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACGCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTTCAGAAAGTCTCTAGTGGATTGAAGATAAAtata < 2:352707/251‑1 (MQ=255) atatGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCGTTAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTGTTTATAGGGCGGTTACCAGTTTTGCTAGTTCTTTGTATCAGAAAAAGTGCTCCATGAAGGCAGGAGTGGATTGAAGATAAATATAAGTATAAAt < 2:221771/251‑1 (MQ=255) gCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAATATAAGGATAAATCAACATTTTTGTCTGTCTTCAGAAAACCACATCttt < 1:369718/251‑1 (MQ=255) aaGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAATATAAGGATAAATCAACATTTTTGTCTGTCTTCAGAAAACCTCATCTTTCAATCTCTATGATCGTTTTCCTCGTCTGTTTTTGTCTAt < 1:479515/251‑1 (MQ=255) aaGTGGCTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAATATAAGGATAAATCAACATTTTTGTCTGTCTTCAGAAAACCACATCTTTCAATCTCTATGATCGTTTTCCTCGTCTGTTTTTGTCTa < 1:270548/250‑1 (MQ=255) | GTGGTTTTTTTGGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGTGGGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGTTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAATATAAGGATAAATCAACATTTTTGTCTGTCTTCAGAAAACCACATCTTTCAATCTCTATGATCGTTTTCCTCGTCTGTTTTTGTCTAT > NC_000913/4504257‑4504742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |