| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,808,243 | C→T | intergenic (‑5/‑297) | rirA ← / → waaA | small regulatory RNA RirA/KDO transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,808,243 | 0 | C | T | 100.0% | 90.3 / NA | 27 | intergenic (‑5/‑297) | rirA/waaA | small regulatory RNA RirA/KDO transferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (9/18); total (9/18) | |||||||||||
GTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTT > NC_000913/3808000‑3808457 | gtCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTa < 1:25343/251‑1 (MQ=255) aaGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCAtttctt < 1:252244/251‑1 (MQ=255) aTTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCg < 1:145250/251‑1 (MQ=255) gCATCAGGATAATTCTGCTTGAGCGTACTGATGATAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTTTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCg < 2:396854/250‑1 (MQ=255) aTCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAAt < 2:341853/251‑1 (MQ=255) aTCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATAGCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAAt < 1:198565/251‑1 (MQ=255) cAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATAGCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACGCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATg < 2:447273/250‑1 (MQ=255) gtagtTAATAACATATCCCCATTATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTTATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAAt < 1:430529/251‑1 (MQ=255) aataaCATATCCCAATGATATCGCATCTTTATGACCAGGATTTGTCGAAATGGCTGTAACACTAGCGACTCTTTTGTGTGATTGTCGGGTTAAGTTAAGCATAAAAAAGCACGCTACAGCCCCAGGCTCAACATCTACCTGAATACTGATAACGCACTTCCGTTGACGTGTTATTGTATAATTTCTTTCGCAGCAATCCGACTCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAAt < 2:178637/250‑1 (MQ=255) cATATCCCAATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATa > 1:391554/1‑250 (MQ=255) atCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTc < 1:215858/250‑1 (MQ=255) aTCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAAt > 1:404362/1‑251 (MQ=255) atgatcatgATTTTTCGAAATTGCTTTCCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCATAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTTACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAg < 2:391554/242‑1 (MQ=255) aCCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACg < 1:9522/251‑1 (MQ=255) cGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGt > 2:236364/1‑247 (MQ=255) ttCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTTCCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCTATCCGACCCGAATGATTTTTATGCACAAAATATACTTTTATCATAAAAATCAAGTAGATAAAAAATGGCATGTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATgg < 1:37865/250‑1 (MQ=255) ccACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGc < 1:385052/251‑1 (MQ=255) tGGTTAATTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTTCCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCAGTTCTTTCGCAGCAATCCGTCCCGAATGAtt < 2:61363/126‑1 (MQ=255) tGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACCGCTACCTGAATACTGATAACGCCCTTACTTTGCCGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGCCCCGAATGAtt > 1:61363/1‑126 (MQ=255) ttaagCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACaaaaaaa > 1:318453/1‑250 (MQ=255) agCAGAAAAAAGCACGCTACCGCCCCAGGCTAAGCAGCTACCTGAATCCTGATAACGCACTTACTTTGACGAGTTAGTGTATCATTTCTTTCGCAGCCATCCGCACCGAATGCtttt > 1:524067/1‑117 (MQ=255) gCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGATACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCACATAGATAAAAAATAGCATTTCGATACTGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGa > 1:273878/1‑214 (MQ=255) gCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGc > 1:503296/1‑248 (MQ=255) gCTACCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTAtt < 2:175352/251‑1 (MQ=255) aCCTGAATACTGATAACGCACTTACTTTGACGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTAttt < 1:194341/249‑1 (MQ=255) cGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATgggg < 1:98733/142‑1 (MQ=255) cGTGTTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGACCTATGTAGATTTGAAAATgggg > 2:98733/1‑142 (MQ=255) | GTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTTGTGTGATTGTCTGGTTAAGTTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTT > NC_000913/3808000‑3808457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |