New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	3 (0.070)	8 (0.200)	7/460	1.6	73.4%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	3 (0.080)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

GAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGAC  >  NC_000913/1209361‑1209836                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                           gAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTcc                                                                                                                                                                                                                                    <  1:140968/250‑1 (MQ=255)   gCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTCCCa                                                                                                                                                                                                                                  >  2:81130/1‑250 (MQ=255)        aTCCACCGTTGCATTCCCCTTAATACTTAAAATAGAGGGACCTGTATCAAGCACCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTACTCTTCAGAAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaa                                                                                                                                                                                                                            <  1:307446/251‑1 (MQ=255)             ccGTTGCACTCCCCTTAATTCTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCTCCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGTCATTGCAGCCAGCCTTTTGGCGGAGTGGCTGAAGGCCACTGAACCGGGAC‑ACCAACAGGGAATTCAGGGccttctcccaaacgaaggttt                                                                                                                                                                                                                       >  2:177886‑M2/1‑230 (MQ=255)                           tGAATACTTAAAATCGAGCGAACCGTATCAATCCCCCGCCCGTCATCCCAGCAACGAATAAACTCACCACGTAAATCAGGCCATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTAAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGGCCACGGAACCGGGACCACCA‑CAGGTAATGCAGCGccttctcccaaaccaaggttttcgagtgacgtctg                                                                                                                                                                                                         <  2:17403‑M2/251‑36 (MQ=255)                                 attaAAATAGAGCGACCTGTCTCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGACAGTTCCGGGTATTCTTCAGCAGACAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt                                                                                                                                                                                                   <  2:361709‑M2/250‑42 (MQ=255)                                    aaaaTAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAACCTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTATCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                                                                                                >  1:360107/1‑251 (MQ=255)                                                                                               acGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                                                                                                                     <  1:88578‑M2/251‑104 (MQ=255)                                                                                                                    tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgggccgcc                                                                                                                <  2:260786‑M2/251‑125 (MQ=255)                                                                                                                                                             aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgca                                                                        <  2:128028‑M2/250‑165 (MQ=255)                                                                                                                                                                 aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactgggcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagtt                                                                   >  1:284036‑M2/1‑82 (MQ=255)                                                                                                                                                                                                   ggAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCg                                 >  1:229098/1‑251 (MQ=255)                                                                                                                                                                                                                gCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATGGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGTATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGGCCGAAAGGCCGGGACt                    <  2:360107/251‑1 (MQ=255)                                                                                                                                                                                                                                   cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccgtatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaattagtcatcatccagatcggtggcaggcgtgccggtctgggggtta  >  1:361709‑M2/1‑17 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                           GAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGAC‑ACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGAC  >  NC_000913/1209361‑1209836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.