New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	26 (0.610)	24/492	0.5	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	362204 =	0 (0.000)					coding (976/1254 nt)	lacY	lactose permease

GAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCCACCAGACCCAGCACCAGATAAGCGCCCTGGAAACCGATGCTTTCATACATATTGCCCGCCAGTACAGACATAAAAATCATCGCCAGTTGCTTAAAGAAGCAGAAACAGACCAGATAAATCGTCGCTGAAAAACGCACTTCAAACTGGCTGGTAATATATTTAAAGCAGCCCACCAGCAGGAACGGTACTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAGC  >  NC_000913/361960‑362450                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       gccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCaaa                                                                                                                                                                                                                                                  <  2:3933‑M2/7‑1 (MQ=255) gccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagtggccatgtttttcggcagtgagagcagagatagcgctgatgtccggcggtgcgtttgccgttacgcaccaccccgtcagtagctgaacaggagtgacagcttatagaaacagaagccactggagcacctcataaacgccagcatgcagtaaatcagtaagttggcagcatcaccCTTCaaa                                                                                                                                                                                                                                                  <  1:415720‑M2/7‑1 (MQ=255)   cattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACa                                                                                                                                                                                                                                                <  1:374950‑M2/9‑1 (MQ=255)                  caatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTc                                                                                                                                                                                                                                  >  1:181251‑M2/228‑250 (MQ=255)                   aatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAg                                                                                                                                                                                                                                <  2:27421‑M2/25‑1 (MQ=255)                                                             gaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCaat                                                                                                                                                                                      <  1:295025‑M2/67‑1 (MQ=255)                                                              aactgcagttgccatgttttacggcagggagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCaata                                                                                                                                                                                     <  1:166801‑M2/68‑1 (MQ=255)                                                                     gttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggcgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAGTACGTa                                                                                                                                                                              <  1:114002‑M2/75‑1 (MQ=255)                                                                               tttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACataa                                                                                                                                                                     <  2:286946‑M2/84‑1 (MQ=255)                                                                                 tacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACataata                                                                                                                                                                   <  1:274308‑M2/86‑1 (MQ=255)                                                                                                                                       gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACGTCCAGCGCTGAGGTGGCGAACTATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCATTGgcg                                                                                                            <  1:340480‑M2/141‑1 (MQ=255)                                                                                                                                            accccgtcagtagctgaacaggcgggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactcaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGCGCCATTAATACGTACAGACATAATAGGGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATCCGATTAATGATCAGTGGCgcaacg                                                                                                       >  1:134970‑M2/106‑249 (MQ=255)                                                                                                                                                              aaggaggtacagcagatagaaacagaagcgactggagcaccccaaaaaccccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGCTTTCAGAATAACCACTGCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTACCGGCCAGCAGCATGGCGTTTTTCGCACCGATGCGACTAATGATCAGCGTCGCATAGAACAGAAGCGAGGCGTTa                                                                                     <  2:345840‑M2/164‑1 (MQ=255)                                                                                                                                                                  agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGt                                                                                  >  1:80561‑M2/84‑250 (MQ=255)                                                                                                                                                                                    aagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTACAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGtt                                                                >  2:355643‑M2/66‑250 (MQ=255)                                                                                                                                                                                        agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTa                                                           <  1:135550‑M2/190‑1 (MQ=255)                                                                                                                                                                                              tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCg                                                                                                                                              >  2:132694‑M2/56‑162 (MQ=255)                                                                                                                                                                                              tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCg                                                                                                                                              <  1:132694‑M2/107‑1 (MQ=255)                                                                                                                                                                                                            aacaccatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCt                                       <  1:291267‑M2/210‑1 (MQ=255)                                                                                                                                                                                                               accatcatacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGtt                                    >  1:388499‑M2/39‑251 (MQ=255)                                                                                                                                                                                                                 catcatacactaaatcagtaagaaggcagcatccccCTTCAAACCTATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGCGGTTGCGAACGATGATCCAATAATACGTACAGACATACTAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGAAGCAATTAATGATCAGTGACGCAAAGAACATAATCGCGGCGTTAAGTAATTCACCCATTGTCGGTACGTAGCCACATACCCGCGAACCCAGTtcc                                  >  2:295922‑M2/37‑250 (MQ=255)                                                                                                                                                                                                                    catacactaaatcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTAAGAATAACCACTTCAAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGAAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTAACCTGTTCACCg                               >  1:100697‑M2/34‑251 (MQ=255)                                                                                                                                                                                                                              atcagtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACTTACAGACATAAGAGTGCCAGCCAGCAGCAGGTCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGa                     <  2:181251‑M2/228‑1 (MQ=255)                                                                                                                                                                                                                                 agtaagttggcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACg                  <  1:98649‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                                          gcagcatcaccCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTaa            >  2:411026‑M2/12‑248 (MQ=255)                                                                                                                                                                                                                                                  accCTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGAAGAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCACATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAGc  >  2:323889‑M2/4‑250 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       GAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCCACCAGACCCAGCACCAGATAAGCGCCCTGGAAACCGATGCTTTCATACATATTGCCCGCCAGTACAGACATAAAAATCATCGCCAGTTGCTTAAAGAAGCAGAAACAGACCAGATAAATCGTCGCTGAAAAACGCACTTCAAACTGGCTGGTAATATATTTAAAGCAGCCCACCAGCAGGAACGGTACTTCAAACATATGCAGCGTTTTCAGAATAACCACTTCCAGCGCTGAGGTGGCGAACGATGAGCCAATAATACGTACAGACATAATAGTGCCAGCCAGCAGCAGGGCGTTTTTCCCACCGATGCGATTAATGATCAGTGGCGCAAAGAACATAATCGAGGCGTTAAGTAATTCGCCCATTGTCGTTACGTAGCCAAATACCCGCGTACCCTGTTCACCGGTAGCAAAGAACGAAGTAAAGAAATTAGC  >  NC_000913/361960‑362450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.