New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	32 (0.750)	31/492	0.3	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 323450	0 (0.000)					coding (1113/1428 nt)	ykgF	putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain

GGTTATTGTCGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCACGCGATCTTCCTGA  >  NC_000913/323210‑323698                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                         ggTTATTGTCGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgact                                                                                                                                                                                                                                                >  2:43722‑M2/1‑241 (MQ=255) ggTTATTGTCGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaat                                                                                                                                                                                                                                                    >  1:353893‑M2/1‑241 (MQ=255)                             gTGCTGGCCTCTGAATTTCGGGAGGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGGATATCGCCCTATTGGCGGTCATGGATATGGCTCTAGTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttca                                                                                                                                                                                                                    >  1:312695‑M2/1‑213 (MQ=255)                                                gggATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGTGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCGCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCGTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttatagatagtgtattatgttcagataatgcacgatgacttt                                                                                                                                                                                                 >  2:144718‑M2/1‑194 (MQ=255)                                                 ggATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg                                                                                                                                                                                                >  1:171105‑M2/1‑193 (MQ=255)                                                  gATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                                                                                                                               >  2:45708‑M2/1‑192 (MQ=255)                                                       gctgctCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                                                                                                                           >  2:79388‑M2/1‑187 (MQ=255)                                                                      cTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGGTATGGCTCTATTTATCCCGGGCCAATTGGTGCGGGGATTTCTCCGCTACTTTGCGGCTATAAAGATTTTTAAGATTTTCCCTACGCCTGCTCTTTATGCACCGCTTGTGACAACGGGgggaatgactcccacttatttttaaggttttattttcagataatgcccgaggactttgtcatgccgctccaccgatttt                                                                                                                                                                           <  2:300788‑M2/251‑80 (MQ=255)                                                                                   aTGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                                                                                                                               >  1:188846‑M2/1‑159 (MQ=255)                                                                                                           cATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                                                                                                                                      >  2:215683‑M2/1‑135 (MQ=255)                                                                                                                   cGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaactacagcgacttccgtcccagccgtgccaggtgctgcctc                                                                                                                              >  1:57927‑M2/1‑127 (MQ=255)                                                                                                                       cATGGATCTGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                                                                                                                              <  2:98937‑M2/247‑125 (MQ=255)                                                                                                                       cATGGATATGGCTCTATTTAGCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCGTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgtgcagataatgcccgatgactttgtcatgcagctccacctattttgataacgacagcgacttccgtcgcagccgtgccaggtgctgcctcaga                                                                                                                           >  2:206375‑M2/1‑123 (MQ=255)                                                                                                                             tatGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggt                                                                                                                    <  1:428625‑M2/251‑135 (MQ=255)                                                                                                                                 gCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg                                                                                                                >  2:390349‑M2/1‑113 (MQ=255)                                                                                                                                           tCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctacaccgattttgagaacgacagcgacttccgtcacagccgtgccaggtgctgcctcagattcaggatatgccgctcaatt                                                                                                      <  2:328844‑M2/251‑149 (MQ=255)                                                                                                                                                   cAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgt                                                                                              <  1:314937‑M2/251‑157 (MQ=255)                                                                                                                                                         gTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcg                                                                                        >  1:285459‑M2/1‑89 (MQ=255)                                                                                                                                                                     ttccGCTACTTGGCGGATATAAATATTTTAAAGATTTACCCTTCGCCTGCTCTTTATGCCCAGCTTGTGACAAGGTGggtaatgactccaacttatttatagtgttttatgttcagataatgcccgatgactgtgtcatgcagctccaccgattgtgagaacgacagcgacttccgtcccagccttgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtagagcgcttgctgatta                                                                             >  2:431374‑M2/2‑77 (MQ=255)                                                                                                                                                                          cTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg                                                                                                                                                                                <  1:221648‑M2/146‑75 (MQ=255)                                                                                                                                                                          cTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg                                                                                                                                                                                >  2:221648‑M2/1‑72 (MQ=255)                                                                                                                                                                            gctTGGCGGCTATAAAGATTTTAAAGATGTACCCTACGCCTGCTCTTTATGTATAGCTTGTGACAACGGGggtaatgactccaacttagtgatagtgttttatgttcagataatgtccgatgactttctcttgcagctgcacctattttgagaacgacagcgacctccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcatc                                                                     >  2:167178‑M2/2‑70 (MQ=255)                                                                                                                                                                               tGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagcttt                                                                  <  2:330367‑M2/251‑185 (MQ=255)                                                                                                                                                                                           agattttaaagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgg                                                      <  2:84124‑M2/251‑197 (MQ=255)                                                                                                                                                                                             attttaaagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagcttt                                                                  >  2:328128‑M2/1‑53 (MQ=255)                                                                                                                                                                                             attttaaagatttACCCTACGCCTGCTCTTTATGAACAGCTTCTGACAACGTGggtaatgactcctacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagcttt                                                                  <  1:328128‑M2/237‑185 (MQ=255)                                                                                                                                                                                                       tttACCCTACGCCTGCTCTTTATGCACAGCTTGAGACCACGTGggtcatgactccaacttattgatcgtgatttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaccgccagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagc                                          <  1:386432‑M2/251‑209 (MQ=255)                                                                                                                                                                                                         tACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgcttttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcgg                                        <  1:288705‑M2/251‑211 (MQ=255)                                                                                                                                                                                                            ccTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                                      <  1:307408‑M2/250‑213 (MQ=255)                                                                                                                                                                                                                         tttATGACCAGCTTGTGACAACGTGggtaatgactccagcttcttgctagagttttatgttcagataatgcccgatgcctttgtcatgcagctccaccgattttgagaacgacagagacttccgtcccagccgtgccagctgctgcctcagattcaggttaagccgctcaattcgctgcgaatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatgcagcggccagccatccgccaac                        <  2:276118‑M2/251‑227 (MQ=255)                                                                                                                                                                                                                                              cGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtcaaagggt   <  1:31463‑M2/251‑248 (MQ=255)                                                                                                                                                                                                                                               gTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtcaaagggtg  <  1:94144‑M2/251‑249 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                         GGTTATTGTCGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCACGCGATCTTCCTGA  >  NC_000913/323210‑323698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.