New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 679348	0 (0.000)	17 (0.400)	17/492	0.8	100%	coding (59/555 nt)	ybeT	Sel1 repeat‑containing protein YbeT
	?	NC_000913	687851 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

TCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAATACAGGTAATTGCTGCAACTATAAAAATTGCGAATATATACATTAATTTTTTATTCATGTGTGAATGCTTCGATTTTCTTTTTATTTTGAAAGCGTCAAGTTTATACTCATCAATAATAAAAAAGTAGTCAGTTAATGCACTTAAGGGATTATTAACAAATGAATAAGGAAGAACAATATCTTCTTTTTGCGCTTTCTGCGCCCATGGAAATACTTAATCAGGGTTGCAAACCCGCGCATGACTCGC  >  NC_000913/679114‑679595                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                        tCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaata                                                                                                                                                                                                                                           >  1:358073‑M1/1‑235 (MQ=255)      ttCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcgggg                                                                                                                                                                                                                                    >  1:81445‑M1/1‑230 (MQ=255)                            tATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCCACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactc                                                                                                                                                                                                                >  1:363137‑M1/1‑208 (MQ=255)                                 cGCCTGTGTATAATCCAGTGTTTTACCGTCGCTACCATGAAGATAAAATGCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat                                                                                                                                                                                                          <  2:163192‑M1/250‑48 (MQ=255)                                                     gTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATAACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactccgtcatttcatttcttcatgtttgagc                                                                                                                                                                                     >  2:358382‑M1/1‑183 (MQ=255)                                                              cGCTACCATGAAGATAAAATTCTCCAAGGAGATATTGCGACGTGGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                                                                                                                            <  1:170069‑M1/251‑78 (MQ=255)                                                                cTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGACAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgcctcagtcatttcctttcttcatgtttgagccgattttttct                                                                                                                                                                          >  2:403813‑M1/1‑172 (MQ=255)                                                                                            gATATTGCGACGTTGAGTGACCATGAATCGAGGACCGCTCCGTGGCTGCCGCGGTGCATGGAAGACTGCCCGGTGAGCTTCAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttattcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt                                                                                                                                              >  1:46765‑M1/1‑144 (MQ=255)                                                                                                        ttGAGTAACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgcttttttctcccgtaaatgccttgaatcagcctatttagaccgtttctt                                                                                                                                  >  2:177451‑M1/1‑132 (MQ=255)                                                                                                          gggtgACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTTGTGAATGGAAGACTGACCGGTGAGCTTAAATAATCAAAGGCATAATTCCCCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcgtggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttc                                                                                                                                 <  2:376129‑M1/248‑121 (MQ=255)                                                                                                            gTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcc                                                                                                                              >  1:408792‑M1/1‑128 (MQ=255)                                                                                                                                gCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccag                                                                                                          <  2:310113‑M1/251‑144 (MQ=255)                                                                                                                                       gtctgCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgctaagaagcggggaaattcttctcggctgactcagtcatttcatttcttcatggttgagccgattttttctcccgtaaatgccttgaagcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtgtttag                                                                                                   <  2:360942‑M1/249‑151 (MQ=255)                                                                                                                                                              tGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGACGTTTTCTTGGGTTGGCTAAggaaggtacgaataagcggggaaattcttctcggctgactcagacatttaatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttagccccagtttttagtgagatctctcccactgacgtat                                                                            >  1:176284‑M1/1‑78 (MQ=255)                                                                                                                                                               gCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAAggaaggtgcgattaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgta                                                                             <  1:107395‑M1/249‑173 (MQ=255)                                                                                                                                                                                                cACCATGGCTTTATCACGCAACGTTGTTTTCTTGGGTTGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtg                                          <  1:100391‑M1/251‑208 (MQ=255)                                                                                                                                                                                                                                        cTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaccaggttggccagcgtgaataacatcgccagttggttatcgtttttcagcaacccct  >  1:171677‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                        TCCTGTTCCGCTGATTGCTCATACCAGTATCTCGCCTGTGTATAATCCAGTGGTTTACCGTCGCTACCATGAAGATAAAATTCTCCAAGGCGATATTGCGACGTTGAGTGACCATGAATCGCGGAAAGCTCCGTGGCTGCCGTGGTGAATGGAAGACTGCCCGGTGAGCTTAAATAATCAAAGGCATAATTCACCATGGCTTTATCACGCAACGTCGTTTTCTTGGGTTGGCTAATACAGGTAATTGCTGCAACTATAAAAATTGCGAATATATACATTAATTTTTTATTCATGTGTGAATGCTTCGATTTTCTTTTTATTTTGAAAGCGTCAAGTTTATACTCATCAATAATAAAAAAGTAGTCAGTTAATGCACTTAAGGGATTATTAACAAATGAATAAGGAAGAACAATATCTTCTTTTTGCGCTTTCTGCGCCCATGGAAATACTTAATCAGGGTTGCAAACCCGCGCATGACTCGC  >  NC_000913/679114‑679595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.