Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	258,921	IS1 (+) +9 bp	pseudogene (246‑254/331 nt)	crl →	RNA polymerase holoenzyme assembly factor Crl

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	30 (0.710)	29/492	0.4	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	258921 =	0 (0.000)					pseudogene (246/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl
*	?	NC_000913	= 258675	NA (NA)	46 (1.080)	40/492	0.2	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 258929	0 (0.000)					pseudogene (254/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

ACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258430‑258675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGACGCATACAGCCAGACAATCGAAAAAGAATCGAT  <  NC_000913/258929‑258696                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGC                                                                                                                                                                                                                                       >  1:214843/1‑251       TTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTC                                                                                                                                                                                                                                 >  1:129417/1‑251               CATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAA                                                                                                                                                                                                                         <  1:230280/251‑1                         ATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGG                                                                                                                                                                                                               <  1:251252/251‑1                                 GTGCGTTCCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTC                                                                                                                                                                                                       >  1:111365/1‑251                                   GCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTAAGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGAAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGCGTGCTCC                                                                                                                                                                                                      >  1:385894/1‑250                                         CGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGCGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCCTCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTT                                                                                                                                                                                               >  1:17390/1‑251                                          GGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTC                                                                                                                                                                                              >  2:43155/1‑251                                           GGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCAACACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTAGTTC                                                                                                                                                                                              >  2:59292/1‑250                                                  AAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTT                                                                                                                                                                                      <  1:59292/251‑1                                                   AGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCTCCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTC                                                                                                                                                                                     <  2:314937/251‑1                                                           AAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTT                                                                                                                                                                             <  1:239504/251‑1                                                           AAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTT                                                                                                                                                                             <  2:111365/251‑1                                                                      AGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTTTGCTCCAGGCGTTCAACCACTTCAGTGTCTTTTACCGGAACA                                                                                                                                                                  <  1:396536/251‑1                                                                          GCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACTCCATCATACACTAAATCAGTAAGTTGGCAGCATCTCCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCT                                                                                                                                                              <  2:423648/251‑1                                                                                    ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCC                                                                                                                                                    <  2:367118/251‑1                                                                                    ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCC                                                                                                                                                    >  1:173809/1‑251                                                                                    ACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACGAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTTTGCTCCAGTCGTTCAACCACTTCAGTTTCTTTGACCGGAACACTCTTCCAGTCGCC                                                                                                                                                    <  2:203864/251‑1                                                                                      GGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTG                                                                                                                                                  <  1:331064/251‑1                                                                                          GTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCTCCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTTCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGGCGCCTGCTTT                                                                                                                                              <  2:41979/251‑1                                                                                            GAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTGCCGGAACACTCTTCCAGTCGCCTGCTTTAT                                                                                                                                            <  1:131924/251‑1                                                                                                                    CGGCGGTGCTTGTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACATCTGATAGAACCAGAAGCCTCTGGAGCCCCGCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCTGCCCCGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCGGTCGTTCAACCACTTCAGAGTCTTTTACCGGAACGCTCTTCCATTGGCCTGCTTTATCGAACACTCCTAACTGGTAACTtt                                                                                                                    <  2:388596/251‑3                                                                                                                                   CGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATT                                                                                                     <  1:43155/251‑1                                                                                                                                    GTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTC                                                                                                    <  1:162239/251‑1                                                                                                                                    GTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTC                                                                                                    >  1:181320/1‑251                                                                                                                                    GTTACGCACCACCCCGTCAGTAGATGAACAGGCGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGGAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAACCTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTCTCGACCAGACCAAACTGGTAACTGTAGGTAACACGGGATTC                                                                                                    >  2:239986/1‑251                                                                                                                                              ACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCTCTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCC                                                                                          <  2:79974/251‑1                                                                                                                                                        TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTT                                                                                            >  1:235808/1‑239                                                                                                                                                        TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTT                                                                                            <  2:235808/239‑1                                                                                                                                                         AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCC                                                                                >  1:45790/1‑250                                                                                                                                                            TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCAATGGAGCAACTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACC                                                                             >  1:277025/1‑250                                                                                                                                                              AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGC                                                                          <  1:336376/251‑1                                                                                                                                                                          aaCTGATACACACAGAAGACACTGGAGCCCCTCAAAAACACCATCATAAACTAAATCAGTCAGTTGACAGCATCACCCACGCAGCTTCTCGTAAAAATCACGCAGGGTGTGCTCCACTCGTTCAACCACTTCAGAGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGCACAGACCAACCTGGTAACTGTCGGTAAAACGGGAATCCTGCGCTTCCAGCTACATCCACCAGCCCCAGAATTCAC                                                              >  2:254895/3‑251                                                                                                                                                                            CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGC                                                            >  2:11972/1‑251                                                                                                                                                                                 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTT                                                        <  2:129417/250‑1                                                                                                                                                                                      CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTG                                                  >  2:222860/1‑251                                                                                                                                                                                          AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGG                                              <  1:317490/251‑1                                                                                                                                                                                                 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCA                                         <  1:13482/249‑1                                                                                                                                                                                                  GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGT                                      >  2:171477/1‑251                                                                                                                                                                                                     CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCAGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGA                                   <  1:362266/251‑1                                                                                                                                                                                                      ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGGCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGAC                                  <  2:167718/251‑1                                                                                                                                                                                                              AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCCCGTCATTGTCGTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGTTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACTCACTTCCGGTGCCGGTTTCACGTTGACGCATACAG                          <  1:31502/251‑1                                                                                                                                                                                                                   CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTGCAGGGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCGTTATCGAGCAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCATTTCCATCCATCAGCCCCAGATTTCACGCGGTTCCGGTGCCGGTTTCACGTTGACGCATACAGCCAGA                     <  1:276515/251‑1                                                                                                                                                                                                                     tcatacactcccTCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGCCGCATACAGCCAGAC                    >  2:49148/13‑250                                                                                                                                                                                                                       ATACACTAAATCAGTAAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGACGCATACAGCCAGACAAT                 <  1:24773/251‑1                                                                                                                                                                                                                                      AAGTTGGCAGCATCACCCACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACGTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGACGCATACAGCCAGACAATCGATAAAGAATCGAT  <  2:236271/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258430‑258675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACGCAGCTTCTCGTGAAACTCACGCAGGGTGTGCTCCAGTCGTTCAACCACTTCAGTGTCTTTTACCGGAACACTCTTCCAGTCGCCTGCTTTATCGAACAGACCAAACTGGTAACTGTAGGTAAAACGGGATTCCTGCGCTTCCAGCTCCATCCACCAGCCCCAGAATTCACGCACTTCCGGTGCCGGTTTCACGTTGACGCATACAGCCAGACAATCGAAAAAGAATCGAT  <  NC_000913/258929‑258696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.