Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,628,621 Δ6,226 bp ettA[rob] ettA, slt, trpR, yjjX, ytjC, [rob]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4628621 4634846 6226 29 [0] [1] 30 ettA–[rob] ettA,slt,trpR,yjjX,ytjC,[rob]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 46286200 (0.000)29 (0.700) 28/482 0.4 100% intergenic (+73/+235) nadR/ettA DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA
?NC_000913 4634847 = 0 (0.000)coding (464/870 nt) rob DNA‑binding transcriptional dual regulator Rob

CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCG  >  NC_000913/4634597‑4635096
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         
gcggatggtttacgcagccgcggcagttcggtggatcgcaaagagttccagaactggctggtggagatgctcgaagagaacaatatcgaatttgtgcgggtggaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggttcgtgagatgatggtggagcagagataaccgtgatgaaactggttaaaggggtggtatagtatgagtttttttgatgagttgaaaacctctctggaagagga                                                                                                                                                                                                                                                           <  1:190082‑M2/1‑1 (MQ=255)
       gtttacgcagcctcggcagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCaga                                                                                                                                                                                                                                                    <  1:240034‑M2/8‑1 (MQ=255)
                 cctcgacagttcggtggatcgcaacgagttccagaacttgctggtggagatgctcaaagagaacaatatcgaatttgcgcgggttgaagaggccgattacgacagcagtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagctacccgtgatgaaactgctcaaaggcgagggataaaatgagtttttttgatgagttgaaaacctctatggaagaggAAATCAGAGATTTGCTcc                                                                                                                                                                                                                                          >  2:385688‑M2/234‑251 (MQ=255)
                  ctcggcagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTcc                                                                                                                                                                                                                                          >  1:29802‑M2/233‑250 (MQ=255)
                    cggcagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAg                                                                                                                                                                                                                                        <  1:23920‑M2/20‑1 (MQ=255)
                                               ccagtacttgctggtggagatgcacgaagagaacaatatcgaatttgtgcgggttgaagaggaagaatacgccagtcgattcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATACGAGATTTGCTCCAGCGAACAGGAGTAGCTATGGGTAACAcc                                                                                                                                                                                                             >  2:288985‑M2/204‑250 (MQ=255)
                                                   aacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAAAAGGAGTAGCTCTGGGTAACACCAATc                                                                                                                                                                                                         >  1:368581‑M2/200‑250 (MQ=255)
                                                           ggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcccgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagatgAAATCa                                                                                                                                                                                                                                                      <  1:325611‑M2/6‑1 (MQ=255)
                                                            gtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTAt                                                                                                                                                                                               >  2:121883‑M2/191‑251 (MQ=255)
                                                             tggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgagagtcgtttcctgcgctgcgtggtactggagcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtagaaaatgagattttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGAAGCTCTGGGTAACACCAATCAGCGGCGTATc                                                                                                                                                                                              >  2:340814‑M2/190‑251 (MQ=255)
                                                              ggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCt                                                                                                                                                                                             <  1:306962‑M2/63‑1 (MQ=255)
                                                                 gatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTcc                                                                                                                                                                                          <  1:211101‑M2/66‑1 (MQ=255)
                                                                                caatatcgaatttgtgcgggttgaagaggaagcttacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGAAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTtg                                                                                                                                                                           >  2:75054‑M2/171‑251 (MQ=255)
                                                                                caatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTtg                                                                                                                                                                           >  1:243674‑M2/171‑251 (MQ=255)
                                                                                           ttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGAGTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCa                                                                                                                                                                 <  2:29802‑M2/91‑1 (MQ=255)
                                                                                            tgtgcgggttaaagaggacgcttacgccagtcgtttcctgcgctgcgtggaactggtgcgagagatgctgggggcgcagcgataaccgtgatgaaactgctcaaaggcgcggtatcaaatgagattttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACCCCAATCAGCGGCGTATCTTCCAGGGTGACACATTTGTGCTCTGGCAt                                                                                                                                                                >  2:40457‑M2/159‑250 (MQ=255)
                                                                                                  ggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGTTCCAGCGAACAGGAGTAGCTCTGGGTAACTCGAATCAGCTGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCAGAGTGAAt                                                                                                                                                         <  1:394577‑M2/99‑1 (MQ=255)
                                                                                                                                     gctgcgtcgaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCAcccaggcgtagcggcgggcgcagaacaaacgc                                                                                                                      >  2:179532‑M2/118‑239 (MQ=255)
                                                                                                                                      ctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGgcgaaaacccaaagcg                                                                                                                     >  1:244128‑M2/117‑244 (MQ=255)
                                                                                                                                          gtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAAGCGCTcc                                                                                                                 >  1:38026‑M2/113‑251 (MQ=255)
                                                                                                                                              aactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcacaggcgaggtataaaatgagtttttttgatgagttgaaaccctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTtgt                                                                                                                                                                          >  1:222977‑M2/109‑190 (MQ=255)
                                                                                                                                              aactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACGCCAATCAGCTGCTTATCTTCCAGGGGGACAAATTtgt                                                                                                                                                                          <  2:222977‑M2/82‑1 (MQ=255)
                                                                                                                                                      cgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAAc                                                                                                     <  1:75054‑M2/151‑1 (MQ=255)
                                                                                                                                                                                           actgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTActtctt                                                                <  1:121883‑M2/188‑1 (MQ=255)
                                                                                                                                                                                             tgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcg                                                                                                                                         >  1:377506‑M2/62‑176 (MQ=255)
                                                                                                                                                                                             tgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAgcg                                                                                                                                         <  2:377506‑M2/115‑1 (MQ=255)
                                                                                                                                                                                                                              gatgagttgaaaacctctctggaagaggAAATCAGTGAGTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAg                              <  2:312081‑M2/222‑1 (MQ=255)
                                                                                                                                                                                                                               atgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCg                            <  1:325173‑M2/224‑1 (MQ=255)
                                                                                                                                                                                                                                                  ggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATg            <  2:244128‑M2/240‑1 (MQ=255)
                                                                                                                                                                                                                                                         gAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCg  <  1:283135/251‑1 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         
CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAATCG  >  NC_000913/4634597‑4635096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: