New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	6 (0.140)	12 (0.310)	12/454	1.3	51.5%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	17 (0.430)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

ACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGT  >  NC_000913/1207556‑1208036                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        aCGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCCACGAACTGGACGCTGACTACTTTGACATGTTGCAGGAGGAACTTCGCAGCGTGGCGGAGGCATAAGGTGCCAGCCTGGAGAAGGGGCGGCACGACACGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAAACCTTGGTTTGGGAGAAGGc                                                                                                                                                                                                                                        >  1:434226‑M1/1‑250 (MQ=255)  cGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGGGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTG‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct                                                                                                                                                                                                                                       <  2:168389‑M1/251‑3 (MQ=255)             ggggtaACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct                                                                                                                                                                                                                            <  1:60644‑M1/249‑14 (MQ=255)                                               gctGGATGAGGACTTCTTTGCCATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc                                                                                                                                                                                          <  2:103448‑M1/250‑48 (MQ=255)                                                        ggaCTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                                                                                                                                                                                 <  2:244582/250‑1 (MQ=255)                                                                 tGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctg                                                                                                                                                                         >  1:228224‑M1/1‑186 (MQ=255)                                                                         gtcagGAGGAACTTTGCAGCGTGGTGGAGCTATCCGGTGCCAGCCTGTAGAAGGGGCGGCCCGACCAGTTA‑TTATCCGCATTTCGCGCGCTGCTGTTAATCCTCAAGAAGTCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTTTCGAAAGCCTTGTTTTGGGATAAGGctctgcattaccttttggtgtcccgggtccgtggccttcagccactccgccaacaggctggctgaaatgcaat                                                                                                                                                                <  2:176456‑M1/249‑74 (MQ=255)                                                                                          aGCGTGGTGGAGGCATCCGGTGACAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGAGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGCTGGCCCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGctctgcattccctgttggtgtcccggttccgtggccttcagccactccgcccacaggctggctgaaacgcaatggtgccgctttttctgc                                                                                                                                               >  1:363595‑M1/1‑161 (MQ=255)                                                                                               ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaag                                                                                                                                          <  2:228224‑M1/251‑96 (MQ=255)                                                                                                                            aGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccg                                                                                                             <  1:247150‑M1/251‑125 (MQ=255)                                                                                                                                                                  gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattc                                                                        >  1:156359‑M1/1‑90 (MQ=255)                                                                                                                                                                        gtgaaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCCCCTGTTTCATAGCTATACCGGTTATGATTGGTGGTAGTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCTTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGt                                                                  <  2:446679/248‑1 (MQ=255)                                                                                                                                                                        gTTAAGCAGCAAGAATCAGCTTGACGATATCATATCGGATGGCACTGTGCCAACGGCTCTCGCAACCCTTGGTTTGGGAGAAGGctctgcaatacctgttggtgtaccggttccgtggccttcagccactcagccaaaaggctggctgacatgcaatggtgccgatttttctgctgaagaatacccggaaccggcaaaggcttatccgacaaatacattgcctgatttacgtggtgagtttattcgtggcg                                                                  >  2:447343‑M1/1‑84 (MQ=255)                                                                                                                                                                                  aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGc                                                        <  1:382161/251‑1 (MQ=255)                                                                                                                                                                                                                ggCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctatttt                          <  1:120683‑M1/251‑208 (MQ=255)                                                                                                                                                                                                                        gCAAACGGCTCTCGAAAACCTCGGTTTGGGAGAATGAGCAAAACTCAATGCAGCAACGGCTACATTAGGGCGCACCGGTGTCATAGCGATCCCGGTTATGAGTGGTGGTATAGAGCAATCAGTAATCATGCAGGGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTGAATAATGCCTGTTTTGCCGTTGTTGCAAATTATGACAATGTCAgc                   <  1:427158/250‑1 (MQ=255)                                                                                                                                                                                                                         ttcttcattttcataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAgcg                  <  2:171988/236‑1 (MQ=255)                                                                                                                                                                                                                                        aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGt  <  1:407454/251‑1 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        ACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTA‑CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGT  >  NC_000913/1207556‑1208036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.