| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 503,429 | C→T | intergenic (‑191/+47) | ybaL ← / ← fsr | putative transporter YbaL/fosmidomycin efflux pump |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 503,429 | 0 | C | T | 93.8% | 42.4 / ‑5.8 | 16 | intergenic (‑191/+47) | ybaL/fsr | putative transporter YbaL/fosmidomycin efflux pump |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (8/7); minor base G (1/0); total (9/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
AATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAGGTAATAGTTTATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGCGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCAGACCTCCCATGCCAAAAGCAAAACCGAAAAAGAGTCCAGAAACCATACCGATACGTCCTGGAAGCAG > NC_000913/503206‑503670 | aaTGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAGGTAATAGTTTATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGttt < 1:302491/251‑1 (MQ=255) ggtggcTATTGTCCATTTTTGGCCGGGGAAACCAAAATTACAGGTAATAGTTTATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGACTTATGGTGACTGTAAAACGATACAGCCAAAGTTTGCCTTTGGCTGCCATGAAATCAGTCTTAATGCCGGTTATCAGACAGGa > 2:363253/1‑250 (MQ=255) tggtTATTGTCCATTTTTGGACGGGAAAACCAAAATTACAGGTAATAGTTTATGACACTTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAat > 2:361690/1‑250 (MQ=255) gtTATTGTCCATTTTTGGCCGGGAAAGCCAAAATTACAGGTAATAGTTTATGACAATTTCATTTATGATGGTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCTCGGATCGGAAAACAGTAGGCGGTTTAACAGAGGAAAGGCGTATGGTGACTGTAAAACGATGCAGCCAAAGTGTGCCTTTGGTTGCAACGAATTCAGTCTTTATGCCGGTTATCAGGCAGGAATATg < 1:160886/251‑1 (MQ=255) cGGGAAAACCAAAATTACAGGTAATAGTTTATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGTGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCTTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTg < 1:363253/251‑1 (MQ=255) aGTTTATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGAATTTATAGAc > 2:63921/1‑251 (MQ=255) tATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAAc > 1:4160/1‑251 (MQ=255) cATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGGAAGCACAGATTTTATAGACTAACTCgctactggg > 2:207522/1‑243 (MQ=255) atgTTCATGACTAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCACAAAAAGAACGGATCGGAACACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGAGTTTATAGCCTAACTTGATGCAGGTGGGATCgg > 2:338577/1‑251 (MQ=255) attGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATTCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGGGGCAGGAAAGCACAGATTTTAGAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAAc < 1:361690/251‑1 (MQ=255) cAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCa < 1:113537/251‑1 (MQ=255) gtGGAGTTAGCTGCAAAAAAAGCACGGATCGGCAGCCAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGGGACGGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATAAGTCTTTATGCCGGTTATCAGGCCGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGAAGAGATTATAAAGAATAACTCGGTGACGGGGGGAGCGGCGACAAGACCCAGAAcaggcgcgccgaagcatcc > 2:95496/2‑233 (MQ=255) ggATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAAATAGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCAGACCTCCCATGCCAAAAGCAAAACCGaaaa > 1:13510/1‑249 (MQ=255) gAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCAGACCTCCCATGCCAAAAGCAAAACCGAAAAAGAGTCCa < 1:207522/251‑1 (MQ=255) aaaCAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGTGACTGTAAAACGCTGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCAGACCTCCCATGCCAAAAGCAAAACCGAAAAAGAGTcc > 1:342909/1‑248 (MQ=255) ggCTTATGGTGACGGTAAAACGATGCAGCCAAAGTGTGCCTTTGGCTGCAATGAAATCAGTCTTTAGGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCAGACCTCCCATGCCAAAAGCAAAACCGAAAAAGAGTCCAGAAACCAGACCGGTACGTCCTTGAagcag < 2:18128/251‑1 (MQ=255) | AATGGTGGTGATAAGCGGGGTGGCGTGATGCATTCCGTCTCCTTTTCCTGGTGGTTATTGTCCATTTTTGGCCGGGAAAACCAAAATTACAGGTAATAGTTTATGACAATTTCATTGATGATGTTCATGAATAATTATTGAATTTTGCAGAAAAATGGAATTAGCTGCAAAAAAAGCACGGATCGGAAAACAGAAGGCGGTTTAACAGAGGAAAGGCTTATGGCGACTGTAAAACGATGCAGCCAAAGTTTGCCTTTGGCTGCAATGAAATCAGTCTTTATGCCGGTTATCAGGCAGGAATATGGTCAACATCCCCAATAGTGGCAGGAAAGCACAGATTTTATAGACTAACTCGATGCTGGTGTGATCGGCGATAAGCCCCAGAACTGCCGCTCCCAGACCTCCCATGCCAAAAGCAAAACCGAAAAAGAGTCCAGAAACCATACCGATACGTCCTGGAAGCAG > NC_000913/503206‑503670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |