| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,474,834 | A→G | intergenic (+117/‑28) | bdcR → / → tabA | putative transcriptional regulator BdcR/DUF386 domain‑containing toxin‑antitoxin biofilm protein TabA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,474,834 | 0 | A | G | 96.5% | 84.7 / ‑6.6 | 29 | intergenic (+117/‑28) | bdcR/tabA | putative transcriptional regulator BdcR/DUF386 domain‑containing toxin‑antitoxin biofilm protein TabA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (11/17); minor base T (1/0); total (12/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
TGTGACTGATTTTATGAGTACCGTGATGTCTGGGCTTTCTGCGAAGGCACGAGAGGGGCACTCTATAGAACAACTCTGTGCAACAGCTGCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAACGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATT > NC_000913/4474588‑4475071 | ggtgACTGATTTTATGAGTACCGTGATGTCTGGGCTTTCTGCGAAGGCACGAGAGGGGCACTCTATAGAACAACTCTGTGCAACAGCTGCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCgtt < 2:244202/250‑1 (MQ=255) gATTTTATGAGTACCGTGATGTCTGGGCTTTCTGCGAAGGCACGAGAGGGGCACTCTATAGAACAACTCTGTGCAACAGCTGCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTtta < 1:7445/250‑1 (MQ=255) aGTACCGTGATGTCTGGGCTTTCTGCGAAGGCACTAGAGGGGCACTCTATAGAACAACTCTGTGCAACAGCTGCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGATTGATGCGGGCCTTGACTCGAAGGGCGGTAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAAGTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGt < 2:133366/251‑1 (MQ=255) gTCTGGGCTTTCGGCGAAGGCACGAGAGGGGCACTCTATAGAACAACGCTGTGCAACAGCGGCAATGGCGGGGGAAGCGATAAAATCTATTCTTTAGGAGTGTTGCGGGCCTTGACCCAAAAGGCGGGAAAGCTCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTGAAGGCTAGCTGAATTTATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGttt < 1:326160/228‑1 (MQ=255) gAAGGCACGAGAGGGGCACTCTATAGAACAACTCTGTGCAACAGCTGCAATGGCGGGGGAAGCGGTAAAAACTATTCTTTAGGGGTGCTGCGGGGCTTGACCCGAAAGGCGGGAAAACGCCTGCCGATAAGTTTTGATAAGACAATAATTCACGCGTTAAGGGTAGCGGAATTGTTTATCTTTTCTTA‑TAACGGTAGAAAAGAATCGTTGTTTTTATTAAGGAGTGGAAAAGATGATTCTCGGAAATAttt > 2:40851/1‑250 (MQ=255) aGAACAACTCTGTGCAACAGCTGCAATGGCGGCGGCAGCGCTAAAAACTATTCTTGGGGAGGGAGGCAGGCCTTGACCCGCAAGGCGGGAAAGAGCCTGCCCATAAGTTGCGATAAGACAAAAATTCACCCGTTAAGGCCAGCGGAATTGATTATCTTTTTGTAATAA‑GATATAAATGGAGGGTTGTTTTTATTTAGGAGGGGGAAAAATGGTCAGCGGGAAAATTCCTACACTTCAGACGTGGCTAcccc > 2:36176/1‑251 (MQ=255) aacaacTCTGTGCAACAGCTGCAATGGCGGAGGAAACCATAAAAACCATTCCTAAGGCGTGAAGCGGGCCCTGACCCGCAAGGCGGGAAAACGCCCGCCGAAAAGTTGTGCTAAGACAATAATTCACCCGTTAAGGCTAGCGGAATTGTTTATCTTTTCGTA‑TAACGATAGAAATTAAGCGTTGTTTTAATTAAGGAGTGGAACAGATGTTAATCGGCAATATTCATAAACTTCAGCCGTGGTGACCCCa > 1:146931/1‑250 (MQ=255) cAACAGCTGCAATGGCTGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAg < 1:40851/251‑1 (MQ=255) cAACAGCTGCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAg < 2:62101/251‑1 (MQ=255) cAGCTTCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCg < 2:149744/251‑1 (MQ=255) cgtGAGGAGGGATGCGGGCCTGGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAAGATTCATAATCTTCAGCCGTGGCTTCCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAAc < 2:204615/249‑1 (MQ=255) cTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGCAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAAc > 2:150497/1‑251 (MQ=255) agTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCaa > 1:146773/1‑249 (MQ=255) gATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGc > 2:238727/1‑251 (MQ=255) tGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGATGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGGGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCa > 2:233500/1‑250 (MQ=255) ggCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCAc < 2:228597/251‑1 (MQ=255) gACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGatat < 2:215817/250‑1 (MQ=255) aGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCa > 1:165685/1‑250 (MQ=255) aGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTCTCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCAAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGAc > 1:232765/1‑251 (MQ=255) ataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TCACGATCGAAATGAAGCGTTGTTTTAATTACGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCCATCGACTGTTTTATCTTATCTAGGAAGATATGACCGAGc > 2:324537/1‑251 (MQ=255) ataatTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCGAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGc > 1:170709/1‑251 (MQ=255) cACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTAc < 1:233500/250‑1 (MQ=255) cgcgTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGGTTTAATTAAGGAGTGGAAAAGTTGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAAGCGACGGTTTTATCTTATCTCGGAAGATACGACCGAGCCGTCCGaa < 2:75165/251‑1 (MQ=255) tAAGGCTAGAGGAATTGATTATCTTTTCGTA‑TAACGATAGCAATGAAGCGTTGATTTAATTAAGGAGTGGAAAAGCTGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTAACCCAGGAGTTACGCCAGGCGATTGAGAATATCAAAGCACACGTTACGGCAGAACCGCCAAAGGGCAAGCACGATATCGAAGGCACTAGACTGTTTTATCTTATCACGCACGATAATACCGAGCCGTACgc > 2:124408/1‑244 (MQ=255) gATTATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCAt < 1:262120/251‑1 (MQ=255) tATCTTTTCGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCGCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGc < 2:170709/250‑1 (MQ=255) cGTA‑TAACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCt < 2:307057/251‑1 (MQ=255) a‑taACGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCAGCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACGGTTTTATCGTAGCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCTGAGTACCATGCCCGCTGTCTTg < 2:232765/250‑1 (MQ=255) cGATAGAAATGAAGCGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACAtt < 1:72000/251‑1 (MQ=255) | TGTGACTGATTTTATGAGTACCGTGATGTCTGGGCTTTCTGCGAAGGCACGAGAGGGGCACTCTATAGAACAACTCTGTGCAACAGCTGCAATGGCGGGGGAAGCGATAAAAACTATTCTTGAGGAGTGATGCGGGCCTTGACCCGAAAGGCGGGAAAGCGCCTGCCGATAAGTTGTGATAAGACAATAATTCACGCGTTAAGGCTAGCGGAATTGATTATCTTTTCGTA‑TAACGATAGAAATGAAACGTTGTTTTAATTAAGGAGTGGAAAAGATGATCATCGGAAATATTCATAATCTTCAGCCGTGGCTACCCCAGGAGTTACGCCAGGCGATTGAGCATATCAAAGCACACGTTACGGCAGAAACGCCAAAGGGCAAGCACGATATCGAAGGCAATCGACTGTTTTATCTTATCTCGGAAGATATGACCGAGCCGTACGAAGCTCGCCGTGCGGAGTACCATGCCCGCTATCTTGACATT > NC_000913/4474588‑4475071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |