New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4635603	15 (0.410)	14 (0.380) +G	14/480	0.9	51.0%	coding (83/474 nt)	creA	PF05981 family protein CreA
	?	NC_000913	4638790 =	12 (0.330)					coding (613/1353 nt)	creD	putative inner membrane protein CreD

TTTTTGCTGTTTTAGCATTCAGTGTTTTTTTCTTAGTAGAGTATGTTTTAGGGCTTGACGGAAATAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCC  >  NC_000913/4635370‑4635851                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         tttttGCTGTTTTAGCATTCAGTGTTTTTTTCTTAGTAGATTATGTTTTAGGGCTTGACGGAAATAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGATCTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTTATAATGGTGGGGCGATTGGCTCATGCAGAAGAGTTTGGTTCGGTCGAgggtaccggcgatctt                                                                                                                                                                                                                                          <  2:230729‑M1/250‑17 (MQ=255) tttttGCTGTTTTAGCATTCAGTGTTTTTTTCTTAGTAGAGTATGTTTTAGGGCTTGACGGAAATAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATg                                                                                                                                                                                                                                          >  2:101713/1‑250 (MQ=255)                 aTTCAGGGTTTTTTTCTTAGTAGAGTATGTTTTAGGGCTTGACGGAAATAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgg                                                                                                                                                                                                                         <  2:160034‑M1/251‑34 (MQ=255)                                                tgagtgCTTGACGGAAATAAAAGGATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACGAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGTCTGATTATGCTGGGGCCATTGGGTCATGCAGAAGAGATTGGTTCGGTCGACATCGTATTTAAAAGGATCTGCGCGGAGGACAAAATTGTTTTGGAAGGCTTTGATGATCCCGa                                                                                                                                                                                           <  2:35852/245‑1 (MQ=255)                                                            ggAAATAAAAGTATTGAGATTTTGTTCTTAATCAATCTGTTATTTACAATGACGAATTAATTGCTCGAGTAATAGATAAAACTGATAAAAATATGCAATAAAAACATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGACATTGGCTCATGCAGAAGAGATTGGTTCGGCAGACACCGTATTTAAAATGATCGGCCCGGATCAAAAAATTGTTGTGGAAGCCTTTGATGATCCAGATGGGACAAATgac                                                                                                                                                                              >  2:242965/1‑249 (MQ=255)                                                               aaTAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCAcc                                                                                                                                                                           >  1:280705/1‑251 (MQ=255)                                                                aTAAAAGTATTGAGCTTTTGTTCTTAATCAATATGTTATTTACCGAGACGAACTCATTGCTCGTGTAATAGATAAAAATGGTAACACTATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCttt                                                                                                                                                                                                      >  1:267456/1‑223 (MQ=255)                                                                aTAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCTTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATGTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCTATTGGCTCATGGAGAAGATATTGGTTCGGTCGACACCGTATTTAAAATGATCGGGCCGGATCACAAAATTGTTTTGGAATCCtgt                                                                                                                                                                                                      <  2:267456/223‑3 (MQ=255)                                                                          tGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGAAAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaataaccttaaccagcaactggccgcctcccagttttttaggtg                                                                                                                                                                 >  2:126190‑M1/1‑161 (MQ=255)                                                                            agaTTTTGTTCTTAATCAATATGTTATTTACCGTGACGACCCAATTGCCCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGAGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtgatt                                                                                                                                                              >  1:231847‑M1/1‑159 (MQ=255)                                                                                            cAATATGTTATTTACCGTGACGAACTAATTGCTCGTGAAATAGCTAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTCTTTAAAATGATCGGCCCGGATCACACAATTGTTGTGGAAGCCTTTGATGATCCCGATGCGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCggtgg                                                                                                                                              >  1:199610/1‑251 (MQ=255)                                                                                               tatGTTATTTACCGTGACGAAATAATTGCTCGGGTAATAGATCAAACTGGTAACAATATGAACTACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCAAATACAGAAGAGATTGATTCGGTCGAgggtaccggcgatctttctgtggggcctggagggcggaataccgaaatgaccttaaccagcaaatggccgcataccagttttttaggggattttataccagccaaacggg                                                                                                                                            >  2:327963‑M1/1‑140 (MQ=255)                                                                                                                      aaTTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCAGTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGAGCGGCCCTGATCGCAAAATTGGTGGGGAAGCCTGTGATGATCCCGATGTGAAAAATGTCACCTTTTATGTGAGCCGGGCGAAAGCCGGTGGTATTAAATGGGGATTGGGTCTGGc                                                                                                                      <  1:264820/249‑1 (MQ=255)                                                                                                                                        tAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgagagtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtggttttctaccagccaaacggggagttagcgagtcaggttttcaggcgcactggcaaagcagct                                                                                                  >  1:167628‑M1/1‑99 (MQ=255)                                                                                                                                                     aaTATGAAATACAAGCATTTGATCCTGTCTTTACGCCTGATACTGCTGGGACCAATGGCTCATGCAGAAGAGATTGGTTCGGTCGAaggtaccggcgatctttctgtggtgactggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggcgattttctaccagccaaacgggaagctagcgagacaggatttcaggcgcaccggcaaagcagctggtttgctaata                                                                                      >  2:293366‑M1/1‑86 (MQ=255)                                                                                                                                                           aaaTACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaacgggccgcatcccagttttttaggtgattttctaccagccaaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcgg                                                                               <  1:251567‑M1/251‑172 (MQ=255)                                                                                                                                                                    cATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGAt                                                                      >  1:191830/1‑251 (MQ=255)                                                                                                                                                                            ccTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGt                                                              >  1:189442/1‑251 (MQ=255)                                                                                                                                                                                   ttAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatggccttaaccagcaactggccgcatcccagttttttaggggattttctaccagccaaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcggtgagcgttttgcttcaggcaatg                                                        >  2:122676‑M1/1‑56 (MQ=255)                                                                                                                                                                                            atagtGCTGGGTCCATTGGCGCATGCAGAAGATAAGGGTTTGTTCGACATCGTTTTTAAAATTATCTGCACGGATCACAGAATGTTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGGGGCGGGCGTAAGCCGGTGGTATTAAAGGGGGATTGGGTCTGGCGTAAGATACCTCCTATGCGGTGATTTTTTGTCCGCAGGGCGTGCTGATTTCACTTTCGTAGCGTATTaaaaa                                              <  2:273559/247‑1 (MQ=255)                                                                                                                                                                                                  cTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtgattttctaccagccaaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcggtgagcgttttgcttcaggcaatgataccggctgggaaa                                         >  1:103406‑M1/1‑41 (MQ=255)                                                                                                                                                                                                     ggtcaaTTGGCTCATGAAGAAGAGATTGGTTCGGTCGACACCTTATTTAAAATGATCGGCCCGGATCTCAAAATTGTTGGTGAAGCCGTTGATTATCCAGATGTGAAAAATGTCACCTGTTATGTGAGGCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGAGCGTATTAAAAACGGCAAAGc                                     <  2:226188/246‑1 (MQ=255)                                                                                                                                                                                                          aTTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAgg                                <  2:191830/251‑1 (MQ=255)                                                                                                                                                                                                                         agagATTGGTTCGGTCGAgggtaacggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtgattttctaccagcccaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcggtgagcgttttgcttcaggcaatgataccggctgggaaaacttcccggcgtttagcgtcgc                   >  1:262900‑M1/1‑18 (MQ=255)                                                                                                                                                                                                                              ttGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtgattttctaccagccaaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcggtgagcgttttgcttcaggcaatgataccggctgggaaaacttcccggcgtttggcgtcg                    <  1:119832‑M1/243‑231 (MQ=255)                                                                                                                                                                                                                              ttGGTTCGGTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtgattttctaccagccaaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcggtgagcgttttgcttcaggcaatgataccggctgggaaaacttcccggcgtttagcgtcgggatcggg            >  2:119832‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                                   tCGGTAGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCTCCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCTGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCa        <  1:263167/250‑1 (MQ=255)                                                                                                                                                                                                                                      gTCGAgggtaccggcgatctttctgtggtgcctggcgggcgtaatagcgaaatgaccttaaccagcaactggccgcatcccagttttttaggtgattttctaccagccaaacgggaagttagcgagtcaggttttcaggcgcactggcaaagcagctggtttgctaataatctcggtgagcgttttgcttcaggcaatgataccggctgggaaaacttcccggcgtttagcgtcgcagtaacgacgccagc    <  1:9129‑M1/251‑247 (MQ=255)                                                                                                                                                                                                                                        cGACACAGTATTTAAAATGATCAGCCCGGATCACTAAATTGTTGAGGAAGCCTTTAATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGAGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGCTCGTATTCAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAACCGCACGTccc  >  1:372019/1‑251 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         TTTTTGCTGTTTTAGCATTCAGTGTTTTTTTCTTAGTAGAGTATGTTTTAGGGCTTGACGGAAATAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATATGAAATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGATCACAAAATTGTTGTGGAAGCCTTTGATGATCCCGATGTGAAAAATGTCACCTGTTATGTGAGCCGGGCGAAAACCGGTGGTATTAAAGGGGGATTGGGTCTGGCGGAAGATACCTCCGATGCGGCCATTTCTTGTCAGCAAGTCGGGCCGATTGAACTGTCGGATCGTATTAAAAACGGCAAAGCTCAGGGCGAGGTAGTATTCAAAAAACGCACGTCCC  >  NC_000913/4635370‑4635851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.