| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2424516 = | 10 (0.270) | 25 (0.680) | 24/482 | 0.4 | 71.4% | intergenic (‑7/+1) | hisP/hisM | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit/lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisM |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
TGACCGTCTTTGTCGCGCACCAGATTGATCGTCTGGCCATTGACCACGATCGACCCTTCACTCGGTTTTTCGAGGAAGTTAATGCAGCGCAGAAAGGTACTTTTCCCCGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTGCAGCATCAGGATCACTTCGTTGCTGTATGCCGGTAACGCAATAC > NC_000913/2424277‑2424764 | gcattgccatatcaatgattttctggtgagtccggggttgagaagcggtgtaagtgaactgcagttgccctgttttacggcagtgagagcagagatagcgctgatgtccggcggtgctttttccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTg > 2:150610‑M1/240‑251 (MQ=255) atggccatatcaatgattttctgttgcgtaccgggttgagaagcggtgtaaggtaactgcatttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagtgggcagcatcaccCTCAGTGCGTTgaa > 2:287019‑M1/238‑251 (MQ=255) tGTCGCACACCAGATTGATCGTCAGGCCATAGACCACGCTCGACCCTTCACTCGGTTTTTCGCGGAAGTTAATGCAGCGCCGAAAGGTACTTTTCCCCGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGttt > 2:157901/1‑251 (MQ=255) taacgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagttagcgatgatgtccggctgtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaaccaaagcccctggagcccctcaaaaactccatcatacactaaatcagtaagttggcagcatcaccCTCACTGCGTTGAAGAAGGTTTCACATGATGCAACCAGCGtt < 2:330863‑M1/42‑1 (MQ=255) accgggttgagaagcggtgtaagtgaactgaagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagctcctcaaaaacaccatcatacacgaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGttt > 2:296710‑M1/209‑251 (MQ=255) gaagcggtgtaagttaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcaggagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTg > 2:224850‑M1/199‑251 (MQ=255) aCCACGATCGACCCTTCACTCGGTTTTTCGAGGCAGTTACTGCAGCGCAGACAGGTACTTTTCCCCGATCCCGACGATCCGATGCTGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGc > 1:21501/1‑251 (MQ=255) agcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagcggatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCg > 1:276412‑M1/197‑251 (MQ=255) gtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAag < 1:400015‑M1/59‑1 (MQ=255) aagtgaactgcagttgccatgttttacggcagggagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAgg > 2:348000‑M1/189‑250 (MQ=255) aagggaactgcagtttccttggttgacggcagtgagatcagagatagcgctgatggacggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgtagcacctcaaaaacatcatcatacactaaaccagtaagttggcagcatcgccCTCAGTGGGGTGAAGAAGGTTTCACATTCCGCATCTAGCGTTTTTCCGCTCTGCGAAAGAGGc > 2:166179‑M1/189‑251 (MQ=255) gagttgccaggttgtacggcagtgagagcagagatagcgctgaagtccggcggtgcttctgccgttacgcaccaccccgtcagtagctgaacaggagcgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatactctaaatcagtaagttggcagcatcactCTCAGTGCGGTGAAGAAGGTGTCACATGCTGCAGCCAGCGTTTTTCCGCTCTGCGATTGAGGCTGATCAGGAc > 2:301183‑M1/179‑251 (MQ=255) cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCg < 2:208563‑M1/110‑1 (MQ=255) tgatgtccggcggtgcttttgccgttacgaaccaccccgtcagtagctgaacaggagggaaagctgatagaaaaagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGa < 2:149353‑M1/111‑1 (MQ=255) ttacgaaccaccccgtcactagctgtaaaggagggccagctgctagaaaccaaagccactggagcacctcaaaaaaaccatcatacactaaatcagtaagttagcagcatcaccCTCAGAGCATTGAAGAAGGTTTCACATGCTGAAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATAAGGACATAAGAGATGATTACATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGCTGAGACGTggcg < 2:262600‑M1/137‑1 (MQ=255) atgCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTggcgg < 1:76426/251‑1 (MQ=255) cGGCATTCGCTTGCCGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGc > 1:314297/1‑251 (MQ=255) agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaactcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGATTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATCAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGAt < 1:407537‑M1/129‑1 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTc < 1:319702‑M1/161‑1 (MQ=255) caggagggacagctgatagaaacagaagccactggagcacatcaaaaacacaatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTcagc < 1:157170‑M1/164‑1 (MQ=255) cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccCTCAGTGCGTTGCAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGc < 1:339137‑M1/173‑1 (MQ=255) aCCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGc > 1:81588/1‑250 (MQ=255) tCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTGATTCTCGGACATCGTATTCGCAGTGCGTTGAAGAAGGTTGCACAGGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCATGACATAAGAGATGATTAAATAGAGCACCGCGTCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTgg < 1:393317/250‑1 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaaacagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTaa > 1:262600‑M1/66‑251 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGc < 1:325041‑M1/190‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGTGATGATTACATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTACATGCCAAc < 2:196609‑M1/194‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTgc > 2:325041‑M1/46‑251 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTgc < 1:391808‑M1/206‑1 (MQ=255) cGATAACGTTTACTTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCTCATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATGAAATAGAGCACTGCGGCAATGCCGAAGGCGGTAAAAGGTGGATACGTGGCGGCGTTAATTTCGTGGGCTATTGTCAGCAGATCCGGCTCCGGGGCATTAAATTCCATTGCAGTATAGTgctgctgcaggat < 2:44391/251‑12 (MQ=255) cactaaatcagtaagttggcagcatcaccCTCATTGCGTTGAAGAAGGGTTCACATGCTGCAGCCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGACCTCCGCGGCAATGCCGAAGGCGGGAATAGGGTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGACCCGTCACCGTGTCAGTAAATGCCAACGCAGTAGAGTGCAGCATCAGGATCACtt > 1:134546‑M1/30‑251 (MQ=255) taagttATTCTCGGACAACTTATTCTCAGTGCGTTTAATAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGCGGCTGTTCAGGACATAAGAGATTATTAAATAGAGCCCCGCGGCAATGCCCAAGGCGGTAAAAGGTTGATACGTTGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTGCAGCATCAGGATCACTTCGtt < 2:157840/246‑1 (MQ=255) aatcagtaagttggcagcatcaccCTCAGTGCGGTGAAGAAGGTTTCACATGCTGCATCCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCTCCGGGGCAGTAAATGCCAACGCAGTAGAGTTCAGCATCAGGATCACTTCGTTg > 2:400015‑M1/25‑251 (MQ=255) atcagtaagttggcagcatcaacCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATCAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATAGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTGCAGCATCAGGATCACTTCGTTGc < 1:151146‑M1/228‑1 (MQ=255) ggACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTGCCGCTCTGCGAAAGAGGCTGATCAGGTCATAAGAGATGAGTAAATAGAGCACTGCGGCAATGCCGAAGGTGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCGGTAGATCCGGCACCGTGGCAGTAGATGCTAACGCAGGAGAGTGCAGCATTAGGATCAGTTTGTTGCTGTATGCCGGt < 2:21501/251‑1 (MQ=255) tctcAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTGCAGCATCAGGATCACTTCGTTGCTGTATGCCGGTAACGCAATAc < 1:157901/250‑1 (MQ=255) | TGACCGTCTTTGTCGCGCACCAGATTGATCGTCTGGCCATTGACCACGATCGACCCTTCACTCGGTTTTTCGAGGAAGTTAATGCAGCGCAGAAAGGTACTTTTCCCCGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAAAAGGTTGATACGTGGCGGCGTTAATATCGCGGGCTATTTTCAGCAGATCCGGCACCGTGGCAGTAAATGCCAACGCAGTAGAGTGCAGCATCAGGATCACTTCGTTGCTGTATGCCGGTAACGCAATAC > NC_000913/2424277‑2424764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |