Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,131,341	Δ128 bp	IS5‑mediated	yghQ ←	putative transport protein YghQ

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3130383–3131342	3131468	127–1086	3 [2]	[1] 60	[insH9]–[yghQ]	[insH9],[yghQ]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	59 (1.290)	52/474	0.1	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	3131469 =	0 (0.000)					coding (940/1068 nt)	yghQ	putative transport protein YghQ

AACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCACGCGCCTTTAATGTATCGG  >  NC_000913/3131226‑3131713                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                     gttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagcagagaagaatttccccgcttattcgcaccttccCTaacaac                                                                                                                                                                                                                                               >  1:312448‑M2/244‑251 (MQ=255)       gaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGt                                                                                                                                                                                                                                         >  2:336539‑M2/238‑251 (MQ=255)               ataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTctggtggg                                                                                                                                                                                                                                 >  1:249273‑M2/230‑250 (MQ=255)                 aaccaactggcgatgttattcacgctggccaacctatttcgggcggaccaaatgatacgtcagtgggagagatctcactcaaaactggggataacgccttatatagagaagaaaaggtctaaataggctgattcaaggcctttacgggagaaaacatcggctcaaacatgaagaaatgaaatgaccgagtcagccgagaagaatttccccgcttattcgcaccttgcCTAACAACCACGGTCTGGTGGTgc                                                                                                                                                                                                                               >  1:429886‑M2/228‑251 (MQ=255)                   ccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGGGGTgcgc                                                                                                                                                                                                                             <  1:45272‑M2/26‑1 (MQ=255)                    caactagcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagctctcactaacaactggggataacgccttaaatggcgcagaaacggtctacataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGcgcg                                                                                                                                                                                                                            >  1:152007‑M2/225‑251 (MQ=255)                          gcgatgttattctcgctggccaacctgtttcgggcggaccaaatgattcgtcagtgggagagatctcactaaaaactggggatatcgccttaaatggcgaagaaacggtctaaataggcttagtcaaggcatttacgggagaaaaaattggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgctcctttcCTAACAACCACGGTCtggtggtgcgcttatcta                                                                                                                                                                                                                      <  1:77225‑M2/33‑8 (MQ=255)                             atgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAAc                                                                                                                                                                                                                   >  1:248661‑M2/216‑251 (MQ=255)                             atgttattcacgctggcaaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaacaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggaatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTaaa                                                                                                                                                                                                                    >  2:142301‑M2/216‑250 (MQ=255)                               gttattaacgctggccaacctgtttcgggaggaccaactgatccgacagtgggagagatctcactacaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGc                                                                                                                                                                                                                 >  2:424579‑M2/214‑251 (MQ=255)                                ttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGc                                                                                                                                                                                                                 >  2:364709‑M2/213‑250 (MQ=255)                                     cacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCAcc                                                                                                                                                                                                           <  2:100941‑M2/44‑1 (MQ=255)                                         ctggccaacctgtttcgggcggaccaaaagatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTg                                                                                                                                                                                                       >  1:181863‑M2/204‑251 (MQ=255)                                           ggccaacctgtttcggtcggaccaaatgatacgtcagtgggagagatctcactaaaaacttgggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTg                                                                                                                                                                                                       <  1:142301‑M2/48‑1 (MQ=255)                                                 cctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTaaaaa                                                                                                                                                                                               <  2:15561‑M2/56‑1 (MQ=255)                                                           gcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCa                                                                                                                                                                                     <  1:7202‑M2/66‑1 (MQ=255)                                                               accaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCa                                                                                                                                                                                  >  1:72437‑M2/182‑250 (MQ=255)                                                                   aatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAAccc                                                                                                                                                                             >  1:84536‑M2/178‑251 (MQ=255)                                                                   aatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtataaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagcagaatttccccgcttcttcgcaccttccCTAACAACCACGGCCTGGTGGCGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGAAAAccc                                                                                                                                                                             >  1:214293‑M2/178‑251 (MQ=255)                                                                             cagtgggagagatctcactaaaaactgggtataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCCCCTCGGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTc                                                                                                                                                                   <  2:375865‑M2/84‑1 (MQ=255)                                                                              agtgggagagctctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTgcg                                                                                                                                                                                                                              >  2:201192‑M2/167‑191 (MQ=255)                                                                              agtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTgcg                                                                                                                                                                                                                              <  1:201192‑M2/25‑1 (MQ=255)                                                                              agtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTcc                                                                                                                                                                  <  1:336539‑M2/85‑1 (MQ=255)                                                                              agtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTcc                                                                                                                                                                  <  2:396837‑M2/85‑1 (MQ=255)                                                                                 gggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCcggc                                                                                                                                                               <  2:202098‑M2/88‑1 (MQ=255)                                                                                           tcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagacatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCga                                                                                                                                                       >  2:230540‑M2/154‑249 (MQ=255)                                                                                            cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCg                                                                                                                                                        <  1:118680‑M2/95‑1 (MQ=255)                                                                                             actaacaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaccatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACACCAACGGTCTGGTGGTGCGCGGCTCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGATGGCGTTCCGGCGGCGTCgaaga                                                                                                                                                    >  1:105560‑M2/152‑250 (MQ=255)                                                                                                    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTgg                                                                                                                                                                                                      <  1:1412‑M2/49‑1 (MQ=255)                                                                                                    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTgg                                                                                                                                                                                                      >  2:1412‑M2/145‑193 (MQ=255)                                                                                                    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATg                                                                                                                                            <  1:468250‑M2/107‑1 (MQ=255)                                                                                                    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATg                                                                                                                                            <  2:181863‑M2/107‑1 (MQ=255)                                                                                                    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTGTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATg                                                                                                                                            <  1:263311‑M2/107‑1 (MQ=255)                                                                                                               cgccttaaatggcgacgaaacggtctaaataggctgcttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTaa                                                                                                                                  >  2:266871‑M2/134‑250 (MQ=255)                                                                                                                              agaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctgccCTAACAACCACGGTCTGGGGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGGCGAAGAAGGTCATGGCGATTTTAAATAACCCGGCGGCAGc                                                                                                                  <  2:398648‑M2/133‑1 (MQ=255)                                                                                                                                aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCgg                                                                                                                >  2:193703‑M2/117‑251 (MQ=255)                                                                                                                                    ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTcc                                                                                                            <  1:211541‑M2/139‑1 (MQ=255)                                                                                                                                    ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTcc                                                                                                            <  1:266871‑M2/139‑1 (MQ=255)                                                                                                                                     gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTGTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCt                                                                                                           <  1:212110‑M2/140‑1 (MQ=255)                                                                                                                                     gtctaaataggatgattcaaggcatttacgggcgaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagcatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAAAGCATCACCTCTGGGTAAAACCTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCt                                                                                                           >  2:162147‑M2/112‑251 (MQ=255)                                                                                                                                           ataggctgagtcaaggcagttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACg                                                                                                     <  2:72437‑M2/146‑1 (MQ=255)                                                                                                                                                  gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTg                                                                                                                                                                         >  1:471134‑M2/99‑176 (MQ=255)                                                                                                                                                  gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTg                                                                                                                                                                         <  2:471134‑M2/78‑1 (MQ=255)                                                                                                                                                         ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAacac                                                                                       <  1:193703‑M2/160‑1 (MQ=255)                                                                                                                                                                       aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGt                                                                         >  2:108707‑M2/78‑251 (MQ=255)                                                                                                                                                                        aaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGtt                                                                        <  1:243104‑M2/175‑1 (MQ=255)                                                                                                                                                                                  ccaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGAc                                                              <  2:312448‑M2/185‑1 (MQ=255)                                                                                                                                                                                    aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGTTCTAAACGCATCACCTCTGGGTAAAAACTTTTTCCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCTCCAACACTGTGCTGCACGAGTTACGCGCCGACCa                                                            <  1:424579‑M2/187‑1 (MQ=255)                                                                                                                                                                                     aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAg                                                           <  2:248661‑M2/188‑1 (MQ=255)                                                                                                                                                                                          gaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACGTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGGTACGCGCCGACCAGATgg                                                       <  2:175583‑M2/192‑1 (MQ=255)                                                                                                                                                                                           aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATgg                                                       >  1:10227‑M2/58‑249 (MQ=255)                                                                                                                                                                                              aaatgaaaggactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATAGAGTgg                                                  <  1:123187‑M2/197‑1 (MQ=255)                                                                                                                                                                                                       gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATgttg                                         >  1:358955‑M2/46‑251 (MQ=255)                                                                                                                                                                                                          tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATgttggtt                                      >  2:318184‑M2/43‑251 (MQ=255)                                                                                                                                                                                                              tcagccgagaagaatttccccgcttattcgcaccttccCTAACAACCACGGTATGGTGTTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTCAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGCCCAGCTGGCGTGGGAAATGTTGGTTGAcc                                  >  2:347616‑M2/39‑251 (MQ=255)                                                                                                                                                                                                                       aagaatttccccgcttcttcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCCCCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAAc                         <  2:327775‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                              tccccgctaattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTCCCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACTCTGGGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCAcg                   <  2:439789‑M2/228‑1 (MQ=255)                                                                                                                                                                                                                                 ccgcttattcgcaccttccCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCGAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCACGCGcc               <  2:238148‑M2/232‑1 (MQ=255)                                                                                                                                                                                                                                           gcaccgtccCGAACAACCACGTTCGGGTGGTGCGCGTATCTAAACGCATCACCTCGGGGTAAAAACTTTGACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCTAAGAATGTCATGGCGATTTTAAATAACCCTGCGGCAGCGGGTCCTAACACGAGCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGTAGTGTGCAATGTTGGTTGACCAGTCAAAACTCCACGCGCCTTTAATGTAt     <  2:293947‑M2/242‑1 (MQ=255)                                                                                                                                                                                                                                              ccttcccTAACAACCACGCTCTTGTGGTGCGCGGATCTAAACGTATCACCTCTTGGTAAAAACTTGTACCCTGCATACCCGCTGGCGTTCCGGCGGCGACGAAGAATGTCATGGCGATTTTAAATAGCCCGGCTGCAGCGGGGTCTATCTCGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGCCCAGATGGAGTGGTCAATGGAGGGTGACCAGACAAAACTCCACGCGCCTTTAATGTATCgt  <  2:105560/246‑2 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                     AACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCACGCGCCTTTAATGTATCGG  >  NC_000913/3131226‑3131713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑