New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	16 (0.470)	15/486	0.9	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 1978494	0 (0.000)					intergenic (‑297/+24)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB

GGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCA  >  NC_000913/1978271‑1978726                                                                                                                                                                                                                                |                                                                                                                                                                                                                                         ggTAAAAAATAATTAGCATTAGAATAGTTGCGTTAAGCTGCAATAAGCAGAACCACATTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGCGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAACTCAATTACTTAAggaaggtgcgaataagcggggaaattc                                                                                                                                                                                                               <  1:222732‑M2/251‑28 (MQ=255)               aGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTGTGTTTAATATTTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAAGGCGTGATTCAGATCTCAGAAAACACTCAATTACTTAAggaaggggcgaataagcggggaaattcttctcgactgact                                                                                                                                                                                                  >  2:156274‑M2/1‑210 (MQ=255)                               cGATAAGCTGCAATAAGCAGAACAACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgactaagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                                                                                                                 <  1:266986‑M2/251‑58 (MQ=255)                                                                     atatGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga                                                                                                                                           >  1:28651‑M2/1‑156 (MQ=255)                                                                      tatGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCATAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgagaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtcaatgccttga                                                                                                                                           <  1:303086‑M2/250‑96 (MQ=255)                                                                       atGTCATTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAAGGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaat                                                                                                                                         >  1:245413‑M2/1‑154 (MQ=255)                                                                                     aGAAATGGGACTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAAATGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGCTCACACAAAACACTCAATTACTTAAggaaggagagaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcattgaatcagcctatttagac                                                                                                                           <  2:159373‑M2/251‑112 (MQ=255)                                                                                        aaTGGGTATTTACACCTCTCTAAGATTTTTCCTAAATCGCCGCAACTGTACTCGTCACTACACGCCCATACACCGCAGGGGGGCTGCGATTCTCAATAATACGTGATGCAGATCACACAAAACCCTCAATTACTTAAggaaggtccgactaatcggggaaattcatctcagctgactcaaacatttcatttcttcatgtttgagccgattttttctaccgtaaatgccttgaatcagcctatttagactgt                                                                                                                        <  2:204919‑M2/251‑115 (MQ=255)                                                                                                             aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACTCACATACAACGGAGGGGGGCTGCGATTTACAATAATGCGTGATGCAGAGCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcg                                                                                                     >  2:231113‑M2/1‑116 (MQ=255)                                                                                                                    ttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTTCTTAAggaaggtgcgaataagcggggaaattcttctcggctgacgcagtcattgcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcccc                                                                                             >  1:289439‑M2/1‑109 (MQ=255)                                                                                                                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttt                                                                                        <  1:168973‑M2/251‑147 (MQ=255)                                                                                                                                                   acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgta                                                              >  2:161394‑M2/1‑78 (MQ=255)                                                                                                                                                    cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttacccccagtttttagtgagatctctcccactgacgtatc                                                            <  1:86009‑M2/251‑175 (MQ=255)                                                                                                                                                       gaacataCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatt                                                         <  2:274592‑M2/249‑178 (MQ=255)                                                                                                                                                          caTACAACGGAGGGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACAAAAAACACTCAATTACTTAAggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatggttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttgg                                                      >  2:266986‑M2/1‑71 (MQ=255)                                                                                                                                                                                                              aaaaCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggatgactcagtcatttcatgtcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacagcttggccagcgtgaataacatcgccagttggttatcgt  <  2:269112‑M2/251‑233 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                         GGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCA  >  NC_000913/1978271‑1978726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.