PEC W3110(Profiling of E.coli Chromosome)

Deletion

1,049,227

1,097,311

48,084

18753290

ymcC, ymcD, insA, insB, cspH, cspG, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, ycdG, ycdH, ycdI, rarA, ycdK, ycdL, ycdM, ycdC, putA, putP, ycdN, ycdO, ycdB, phoH, ycdP, ycdQ, ycdR, ycdS, ycdT, insF, insE, ymdE, ycdU

ƒ¢(3109247-3133480)

Deletion

3,109,247

3,133,480

24,233

18753290

yghD, yghE, yghF, yghG, pppA, yghJ, yghK, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH, yghQ, yghR, yghS, yghT

ƒ¢(4239495-4255870)

Deletion

4,239,495

4,255,870

16,375

18753290

yjbE, yjbF, yjbG, yjbH, yjbA, xylE, malG, malF, malE, malK, lamB, malM, yjbI

ƒ¢(1198444-1225484)

Deletion

1,198,444

1,225,484

27,040

18753290

ymfD, ymfE, lit, intE, ymfG, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, ymfN, ymfR, ymfO, ymfP, ymfQ, ycfK, ymfS, tfaE, stfE, pin, mcrA, icdC, elbA, ycgX, ycgE, ycgF, ycgZ, ymgA, ymgB, ymgC, ycgG, ymgF, ycgH, ymgD, ymgG, ymgH, ycgI

ƒ¢(1630054-1640180)

Deletion

1,630,054

1,640,180

10,126

18753290

ydfH, ydfZ, ydfI, ydfJ, ydfK, pinQ, tfaQ, stfQ, nohA, ynfO, ydfO, gnsB, ynfN, cspI

ƒ¢(1641770-1649361)

Deletion

1,641,770

1,649,361

7,591

18753290

ydfQ, ydfR, essQ, cspB, cspF, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC

ƒ¢(518367-533048)

Deletion

518,367

533,048

14,681

18753290

ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbG, ybbB, ybbS, allA, allR

ƒ¢(535841-550551)

Deletion

535,841

550,551

14,710

18753290

glxR, ybbV, ybbW, allB, ybbY, glxK, ylbA, allC, allD, fdrA, ylbE, ylbF, ybcF

ƒ¢(564277-608454)

Deletion

564,277

608,454

44,177

18753290

intD, ybcC, ybcD, insE, insF, renD, emrE, ybcK, ybcL, ybcM, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, insH, nmpC, essD, ybcS, rzpD, rzoD, borD, ybcV, ybcW, nohB, tfaD, ybcY, ylcE, appY, ompT, envY, ybcH, nfrA, nfrB, cusS, cusR, cusC, cusF, cusB, cusA, pheP, ybdG, nfnB, ybdF, ybdJ, ybdK, hokE, insL

ƒ¢(3486428-3496908)

Deletion

3,486,428

3,496,908

10,480

18753290

yijP, yijO, frwD, pflC, pflD, frwB, frwC, ptsA

ƒ¢(3536156-3549686)

Deletion

3,536,156

3,549,686

13,530

18753290

rhaT, rhaR, rhaS, rhaB, rhaA, rhaD, yiiL, frvA, frvB, frvX, frvR, yiiG

ƒ¢(3556478-3576238)

Deletion

3,556,478

3,576,238

19,760

18753290

yiiF, yiiE, yiiD, dtd, rbn, yihX, yihW, yihV, yihU, yihT, yihS, yihR, yihQ, yihP, yihO, ompL, yihN, yihM, yihL

ƒ¢(2984498-3032266)

Deletion

2,984,498

3,032,266

47,768

18753290

yqeG, yqeH, yqeI, yqeJ, yqeK, ygeF, ygeG, ygeH, ygeI, pbl, ygeK, ygeL, ygeM, ygeN, ygeO, insD, insC, ygeP, ygeQ, glyU, ygeR, xdhA, xdhB, xdhC, ygeV, ygeW, ygeX, ygeY, hyuA, yqeA, yqeB, yqeC, ygfJ, ygfK, ssnA, ygfM, xdhD, ygfO, guaD, ygfQ, ygfS, ygfT, ygfU, idi

ƒ¢(244301-253746)

Deletion

244,301

253,746

9,445

18753290

yafJ, yafK, yafQ, dinJ, yafL, yafM, fhiA, mbhA, dinB, yafN, yafO, yafP, ykfJ, prfH

ƒ¢(262300-387867)

Deletion

262,300

387,867

125,567

18753290

ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI, insO, ykfC, insH, mmuP, mmuM, afuC, afuB, insB, insA, ykgN, yagB, yagA, yagE, yagF, yagG, yagH, yagI, argF, insB, insA, yagJ, yagK, yagL, yagM, yagN, intF, yagP, yagQ, yagR, yagS, yagT, yagU, ykgJ, yagV, yagW, yagX, yagY, yagZ, ykgK, ykgL, ykgM, eaeH, insE, insF, ykgA, ykgB, ykgI, ykgC, ykgD, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahA, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL, frmB, frmA, frmR, yaiO, yaiX, insC, insD, yaiF, yaiP, yaiS, tauA, tauB, tauC, tauD

ƒ¢(389475-404039)

Deletion

389,475

404,039

14,564

18753290

yaiT, insF, insE, yaiU, yaiV, ampH, sbmA, yaiW, yaiY, yaiZ, ddlA, yaiB, phoA, psiF, yaiC

ƒ¢(3697305-3709526)

Deletion

3,697,305

3,709,526

12,221

18753290

hsrA, rbsR, rbsK, rbsB, rbsC, rbsA, rbsD, trkD, yieN, yieM, asnA

ƒ¢(3762909-3772816)

Deletion

3,762,909

3,772,816

9,907

18753290

yidB, yidA, yidX, dgoR, dgoK, dgoA, dgoD, dgoT, cbrA, yidR, yidQ

ƒ¢(3774088-3785257)

Deletion

3,774,088

3,785,257

11,169

18753290

yidE, yidP, glvC, glvB, glvG, ysdC, yidL, yidK, yidJ, yidI, yidH, yidG, yidF

ƒ¢(1963664-1992215)

Deletion

1,963,664

1,992,215

28,551

18753290

yecT, flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insH, yecG, otsA, otsB, araH, araG, araF, yecI, yecJ, isrB, yecR, ftn, yecH, tyrP

ƒ¢(1995801-2027348)

Deletion

1,995,801

2,027,348

31,547

18753290

uvrC, uvrY, yecF, sdiA, yecC, yecS, yedO, fliY, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, yedM, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, fliR, rcsA, dsrB, yodD

ƒ¢(2032588-2043515)

Deletion

2,032,588

2,043,515

10,927

18753290

yedA, vsr, dcm, yedJ, yedR, yedS, hchA, yedV, yedW, yedX, yedY, yedZ, yodA

ƒ¢(2068289-2081066)

Deletion

2,068,289

2,081,066

12,777

18753290

insH, yoeA, insD, insC, yoeE, yeeP, isrC, flu, yeeR, yeeS, yeeT, yeeU, yeeV, yeeW, yoeF

ƒ¢(2103532-2115203)

Deletion

2,103,532

2,115,203

11,671

18753290

wbbL, insH, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB

ƒ¢(2754815-2788618)

Deletion

2,754,815

2,788,618

33,803

18753290

intA, yfjH, alpA, yfjI, yfjJ, yfjK, yfjL, yfjM, yfjN, yfjO, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, ypjL, yfjV, ypjM, yfjW, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, ygaR, yqaC, yqaD, ygaT

ƒ¢(2794312-2800028)

Deletion

2,794,312

2,800,028

5,716

18753290

csiR, ygaU, yqaE, ygaV, ygaP, stpA, ygaW, ygaC, ygaM, nrdH, nrdI, nrdE

ƒ¢(2824452-2829398)

Deletion

2,824,452

2,829,398

4,946

18753290

srlA, srlE, srlB, srlD, gutM, srlR, gutQ

ƒ¢(3361081-3370891)

Deletion

3,361,081

3,370,891

9,810

18753290

gltF, yhcA, yhcD, yhcE, insH, yhcF, yhcG, yhcH, nanK, nanE

ƒ¢(2145403-2186994)

Deletion

2,145,403

2,186,994

41,591

18753290

yegE, alkA, yegD, yegI, yegJ, yegK, yegL, ryeC, ryeD, mdtA, mdtB, mdtC, mdtD, baeS, baeR, yegP, yegQ, ryeE, ogrK, yegZ, yegR, yegS, gatR, insE, insF, gatD, gatC, gatB, insH, gatZ, gatY, fbaB, yegT, yegU, yegV, yegW, yegX

ƒ¢(2199808-2228989)

Deletion

2,199,808

2,228,989

29,181

18753290

molR, yehI, yehK, yehL, yehM, yehP, yehQ, yehR, yehS, yehT, yehU, mlrA, yohO, yehW, yehX, yehY, yehZ, bglX, dld, pbpG, yohC

ƒ¢(2255035-2262631)

Deletion

2,255,035

2,262,631

7,596

18753290

yeiI, yeiJ, rihB, yeiL, yeiM, yeiN, yeiC

ƒ¢(3076224-3078055)

Deletion

3,076,224

3,078,055

1,831

18753290

cmtA, cmtB

ƒ¢(4501438-4514770)

Deletion

4,501,438

4,514,770

13,332

18753290

intB, insC, insD, yjgW, yjgX, yjgZ, insG, yjhB, yjhC, yjhD, yjhE, insN, insI, insM, insO, yjhW, yjhV

ƒ¢(4523114-4604874)

Deletion

4,523,114

4,604,874

81,760

18753290

insA, insB, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, yjhX, yjhR, yjhS, yjhT, yjhA, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH, gntP, uxuA, uxuB, uxuR, yjiC, yjiD, yjiE, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, yjiL, yjiM, yjiN, yjiO, yjiP, yjiQ, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, yjiW, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, yjiY, tsr, yjiZ, yjjM, yjjN, mdoB, yjjA

ƒ¢(729157-739929)

Deletion

729,157

739,929

10,772

18753290

kdpF, ybfA, rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD, ybgA, phr

ƒ¢(4414768-4428387)

Deletion

4,414,768

4,428,387

13,619