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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download  -------------------------- How to Order Resources MTA Sample

cDNA

Contig List

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Hit Count : 1285
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Contig Registered year Tissue Sequence Clone Homology (BLAST )
Top hit (Definition) Score E-Value
whsh_all.Contig1
( singlet )
-   140 bp 1 Clones fiber protein Fb9 [Gossypium barbadense] 494 1.2432e-67
whsh_all.Contig2
( singlet )
-   136 bp 1 Clones fiber protein Fb9 [Gossypium barbadense] 494 1.2432e-67
whsh_all.Contig3
( singlet )
-   164 bp 1 Clones RecName: Full=Chlorophyll a-b binding protein of LHCII type III, chloroplastic; Short=CAB; Flags: Precursor >gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare] 129 3.30603e-06
whsh_all.Contig4 -   230 bp 2 Clones hypothetical protein OsJ_003394 [Oryza sativa (japonica cultivar-group)] 105 0.0
whsh_all.Contig5 -   204 bp 2 Clones inner-membrane translocator [Rhizobium etli CIAT 894] 76 4.5
whsh_all.Contig6 -   534 bp 2 Clones hypothetical protein LOC100216991 [Zea mays] >gi|194697314|gb|ACF82741.1| unknown [Zea mays] 286 2.67837e-24
whsh_all.Contig7 -   784 bp 2 Clones Os04g0354600 [Oryza sativa (japonica cultivar-group)] >gi|38346871|emb|CAE02220.2| OSJNBb0002N06.11 [Oryza sativa (japonica cultivar-group)] >gi|113564112|dbj|BAF14455.1| Os04g0354600 [Oryza sativa (japonica cultivar-group)] >gi|215686875|dbj|BAG89725.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218194653|gb|EEC77080.1| hypothetical protein OsI_15480 [Oryza sativa Indica Group] 389 7.42874e-63
whsh_all.Contig8 -   463 bp 2 Clones PREDICTED: similar to Cyclin M3 [Monodelphis domestica] 74 7.7
whsh_all.Contig9 -   301 bp 2 Clones PREDICTED: similar to thrombospondin [Nasonia vitripennis] 82 0.9
whsh_all.Contig10 -   224 bp 2 Clones RecName: Full=Methionine S-methyltransferase; AltName: Full=AdoMet:Met S-methyltransferase; AltName: Full=Hv-MMT1 >gi|7634680|dbj|BAA94795.1| S-adenosyl-L-methionine: L-methionine S-methyltransferase [Hordeum vulgare subsp. vulgare] 107 0.0
whsh_all.Contig11 -   218 bp 2 Clones mitochondrial NADH ubiquinone oxidoreductase 29 kDa subunit [Zea mays] 192 1.60662e-13
whsh_all.Contig12 -   462 bp 2 Clones hypothetical protein OsI_09155 [Oryza sativa Indica Group] 288 1.19137e-24
whsh_all.Contig13 -   612 bp 2 Clones putative deoxyuridine triphosphatase [Oryza sativa (japonica cultivar-group)] 182 1.40119e-12
whsh_all.Contig14 -   207 bp 2 Clones putative deoxyuridine triphosphatase [Oryza sativa (japonica cultivar-group)] 182 1.40119e-12
whsh_all.Contig15 -   316 bp 2 Clones putative deoxyuridine triphosphatase [Oryza sativa (japonica cultivar-group)] 182 1.40119e-12
whsh_all.Contig16 -   247 bp 2 Clones putative deoxyuridine triphosphatase [Oryza sativa (japonica cultivar-group)] 182 1.40119e-12
whsh_all.Contig17 -   507 bp 2 Clones hypothetical protein OsI_19367 [Oryza sativa Indica Group] 362 3.49181e-33
whsh_all.Contig18 -   628 bp 2 Clones phytoene desaturase [Triticum aestivum] 843 1.07038e-88
whsh_all.Contig19 -   307 bp 2 Clones unknown [Zea mays] 102 0.0
whsh_all.Contig20 -   671 bp 2 Clones RecName: Full=Cysteine synthase; AltName: Full=O-acetylserine sulfhydrylase; AltName: Full=CSase A; AltName: Full=O-acetylserine (Thiol)-lyase; Short=OAS-TL A >gi|218335|dbj|BAA02438.1| O-acetylserine (thiol) lyase [Triticum aestivum] 689 8.91722e-71
whsh_all.Contig21 -   575 bp 2 Clones hypothetical protein OsI_38575 [Oryza sativa Indica Group] 215 5.72014e-16
whsh_all.Contig22 -   495 bp 2 Clones protein transport protein Sec61 beta subunit [Zea mays] 208 2.40804e-15
whsh_all.Contig23 -   231 bp 2 Clones PREDICTED: hypothetical protein [Homo sapiens] 57 3.7
whsh_all.Contig24 -   258 bp 2 Clones heat shock transcription factor [Entamoeba histolytica HM-1:IMSS] >gi|56469412|gb|EAL47163.1| heat shock transcription factor, putative [Entamoeba histolytica HM-1:IMSS] 76 4.6
whsh_all.Contig25 -   594 bp 2 Clones hypothetical protein OsI_31293 [Oryza sativa Indica Group] 587 4.48959e-59
whsh_all.Contig26 -   144 bp 2 Clones hypothetical protein OsI_31293 [Oryza sativa Indica Group] 587 4.48959e-59
whsh_all.Contig27 -   349 bp 2 Clones hypothetical protein OsI_25962 [Oryza sativa Indica Group] 124 1.26926e-05
whsh_all.Contig28 -   300 bp 2 Clones chloroplast inositol phosphatase-like protein [Triticum aestivum] 97 0.0
whsh_all.Contig29 -   358 bp 2 Clones RecName: Full=Dihydroxy-acid dehydratase; Short=DAD 76 4.6
whsh_all.Contig30 -   701 bp 2 Clones hypothetical protein OsI_09579 [Oryza sativa Indica Group] 164 7.33743e-10
whsh_all.Contig31 -   176 bp 2 Clones hypothetical protein OsI_09579 [Oryza sativa Indica Group] 164 7.33743e-10
whsh_all.Contig32 -   592 bp 2 Clones Os07g0655500 [Oryza sativa (japonica cultivar-group)] >gi|113612033|dbj|BAF22411.1| Os07g0655500 [Oryza sativa (japonica cultivar-group)] 199 4.33549e-14
whsh_all.Contig33 -   330 bp 2 Clones hypothetical protein OsI_37510 [Oryza sativa Indica Group] 143 7.85623e-08
whsh_all.Contig34 -   163 bp 2 Clones hypothetical protein OsI_37510 [Oryza sativa Indica Group] 143 7.85623e-08
whsh_all.Contig35 -   339 bp 2 Clones hypothetical protein OsI_03369 [Oryza sativa Indica Group] 80 1.5
whsh_all.Contig36 -   727 bp 2 Clones ribosomal protein L11 [Triticum aestivum] 673 2.16484e-77
whsh_all.Contig37 -   161 bp 2 Clones ribosomal protein L11 [Triticum aestivum] 673 2.16484e-77
whsh_all.Contig38 -   279 bp 2 Clones hypothetical protein OsI_04988 [Oryza sativa Indica Group] 255 8.01235e-21
whsh_all.Contig39 -   487 bp 2 Clones hypothetical protein [Zea mays] 93 0.0
whsh_all.Contig40 -   1069 bp 2 Clones Os07g0681700 [Oryza sativa (japonica cultivar-group)] >gi|33146671|dbj|BAC80017.1| putative glycosyl transferase protein A [Oryza sativa Japonica Group] >gi|113612192|dbj|BAF22570.1| Os07g0681700 [Oryza sativa (japonica cultivar-group)] 759 1.56628e-78
whsh_all.Contig41 -   196 bp 2 Clones Os07g0681700 [Oryza sativa (japonica cultivar-group)] >gi|33146671|dbj|BAC80017.1| putative glycosyl transferase protein A [Oryza sativa Japonica Group] >gi|113612192|dbj|BAF22570.1| Os07g0681700 [Oryza sativa (japonica cultivar-group)] 759 1.56628e-78
whsh_all.Contig42 -   625 bp 2 Clones hypothetical protein OsI_11492 [Oryza sativa Indica Group] 534 7.15604e-53
whsh_all.Contig43 -   222 bp 2 Clones hypothetical protein OsI_11492 [Oryza sativa Indica Group] 534 7.15604e-53
whsh_all.Contig44 -   443 bp 2 Clones dual specificity protein phosphatase Diacylglycerol kinase, catalytic region [Zea mays] 395 4.63659e-37
whsh_all.Contig45 -   716 bp 2 Clones apoplastic invertase 1 [Hordeum vulgare subsp. vulgare] 411 2.38033e-77
whsh_all.Contig46 -   280 bp 2 Clones killer cell lectin-like receptor subfamily A, member 1 [Sus scrofa] >gi|30267432|gb|AAP13541.1| Ly49 [Sus scrofa] 78 2.6
whsh_all.Contig47 -   589 bp 2 Clones Os02g0468400 [Oryza sativa (japonica cultivar-group)] >gi|47497322|dbj|BAD19363.1| putative membrane related protein [Oryza sativa Japonica Group] >gi|113536353|dbj|BAF08736.1| Os02g0468400 [Oryza sativa (japonica cultivar-group)] 290 2.53447e-33
whsh_all.Contig48 -   523 bp 2 Clones serine-glyoxylate aminotransferase [Oryza sativa (indica cultivar-group)] 459 2.20308e-44
whsh_all.Contig49 -   567 bp 2 Clones unknown [Zea mays] 367 1.29166e-33
whsh_all.Contig50 -   219 bp 2 Clones PREDICTED: similar to KLHL23 protein, partial [Homo sapiens] 74 7.7
whsh_all.Contig51 -   184 bp 2 Clones PREDICTED: similar to KLHL23 protein, partial [Homo sapiens] 74 7.7
whsh_all.Contig52 -   826 bp 2 Clones Os03g0356300 [Oryza sativa (japonica cultivar-group)] >gi|108708222|gb|ABF96017.1| 50S ribosomal protein L6, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113548610|dbj|BAF12053.1| Os03g0356300 [Oryza sativa (japonica cultivar-group)] >gi|125543898|gb|EAY90037.1| hypothetical protein OsI_11607 [Oryza sativa Indica Group] >gi|215692529|dbj|BAG87949.1| unnamed protein product [Oryza sativa Japonica Group] 1028 6.58588e-110
whsh_all.Contig53 -   617 bp 2 Clones putative rubisco small subunit [Triticum turgidum subsp. durum] 622 4.30206e-63
whsh_all.Contig54 -   750 bp 2 Clones hypothetical protein OsJ_023313 [Oryza sativa (japonica cultivar-group)] 279 1.03473e-31
whsh_all.Contig55 -   389 bp 2 Clones RecName: Full=Serine carboxypeptidase II-2; AltName: Full=CP-MII.2; Contains: RecName: Full=Serine carboxypeptidase II-2 chain A; Contains: RecName: Full=Serine carboxypeptidase II-2 chain B; Flags: Precursor >gi|619351|gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vulgare=barley, cv. Alexis, aleurone, Peptide, 436 aa] >gi|6102957|emb|CAB59202.1| serine carboxylase II-2 [Hordeum vulgare subsp. vulgare] 110 0.0
whsh_all.Contig56 -   762 bp 2 Clones unknown [Zea mays] 307 6.87181e-54
whsh_all.Contig57 -   449 bp 2 Clones Grx_S2 - glutaredoxin subgroup III [Zea mays] 135 6.68275e-07
whsh_all.Contig58 -   667 bp 2 Clones Os07g0616900 [Oryza sativa (japonica cultivar-group)] >gi|33146865|dbj|BAC79863.1| senescence-associated putative protein-like [Oryza sativa Japonica Group] >gi|33146944|dbj|BAC79992.1| senescence-associated putative protein-like [Oryza sativa Japonica Group] >gi|113611815|dbj|BAF22193.1| Os07g0616900 [Oryza sativa (japonica cultivar-group)] >gi|125559178|gb|EAZ04714.1| hypothetical protein OsI_26875 [Oryza sativa Indica Group] >gi|125601088|gb|EAZ40664.1| hypothetical protein OsJ_024147 [Oryza sativa (japonica cultivar-group)] 424 4.03763e-57
whsh_all.Contig59 -   425 bp 2 Clones putative glucose transport protein STP1 [Oryza sativa Japonica Group] >gi|50508996|dbj|BAD31945.1| putative glucose transport protein STP1 [Oryza sativa Japonica Group] >gi|215704477|dbj|BAG93911.1| unnamed protein product [Oryza sativa Japonica Group] 399 1.63457e-37
whsh_all.Contig60 -   825 bp 2 Clones hypothetical protein BMULJ_05092 [Burkholderia multivorans ATCC 17616] >gi|189337865|dbj|BAG46934.1| hypothetical protein [Burkholderia multivorans ATCC 17616] 207 3.42032e-32
whsh_all.Contig61 -   252 bp 2 Clones hypothetical protein BMULJ_05092 [Burkholderia multivorans ATCC 17616] >gi|189337865|dbj|BAG46934.1| hypothetical protein [Burkholderia multivorans ATCC 17616] 207 3.42032e-32
whsh_all.Contig62 -   663 bp 2 Clones RecName: Full=Ribulose bisphosphate carboxylase small chain PW9, chloroplastic; Short=RuBisCO small subunit PW9; Flags: Precursor >gi|170771|gb|AAA34302.1| ribulose-1,5-bisphosphate carboxylase/oxygenase 671 1.05489e-68
whsh_all.Contig63 -   487 bp 2 Clones Chain 4, Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex >gi|119390381|pdb|2J37|4 Chain 4, Model Of Mammalian Srp Bound To 80s Rncs 431 3.10672e-41
whsh_all.Contig64 -   242 bp 2 Clones Chain 4, Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex >gi|119390381|pdb|2J37|4 Chain 4, Model Of Mammalian Srp Bound To 80s Rncs 431 3.10672e-41
whsh_all.Contig65 -   252 bp 2 Clones hypothetical protein LOC100191398 [Zea mays] >gi|194688794|gb|ACF78481.1| unknown [Zea mays] 113 0.0
whsh_all.Contig66 -   518 bp 2 Clones hypothetical protein OsI_11024 [Oryza sativa Indica Group] 408 1.76879e-38
whsh_all.Contig67 -   1229 bp 2 Clones OSJNBa0065O17.11 [Oryza sativa (japonica cultivar-group)] >gi|116311120|emb|CAH68046.1| B0103C08-B0602B01.3 [Oryza sativa (indica cultivar-group)] 670 2.06488e-115
whsh_all.Contig68 -   118 bp 2 Clones ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Eremopyrum orientale] 95 0.0
whsh_all.Contig69 -   273 bp 2 Clones Os11g0155100 [Oryza sativa (japonica cultivar-group)] >gi|62701652|gb|AAX92725.1| F-box domain, putative [Oryza sativa (japonica cultivar-group)] >gi|77548733|gb|ABA91530.1| F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] >gi|113644492|dbj|BAF27633.1| Os11g0155100 [Oryza sativa (japonica cultivar-group)] >gi|125533450|gb|EAY79998.1| hypothetical protein OsI_35167 [Oryza sativa Indica Group] >gi|125576260|gb|EAZ17482.1| hypothetical protein OsJ_031691 [Oryza sativa (japonica cultivar-group)] 129 3.29126e-06
whsh_all.Contig70 -   745 bp 2 Clones hypothetical protein OsI_09347 [Oryza sativa Indica Group] 884 2.69519e-93
whsh_all.Contig71 -   260 bp 2 Clones PREDICTED: similar to chemokine (C motif) receptor 1 [Monodelphis domestica] 76 4.6
whsh_all.Contig72 -   261 bp 2 Clones predicted protein [Aspergillus terreus NIH2624] >gi|114187705|gb|EAU29405.1| predicted protein [Aspergillus terreus NIH2624] 74 7.9
whsh_all.Contig73 -   775 bp 2 Clones Os08g0567000 [Oryza sativa (japonica cultivar-group)] >gi|113624514|dbj|BAF24459.1| Os08g0567000 [Oryza sativa (japonica cultivar-group)] >gi|215694414|dbj|BAG89407.1| unnamed protein product [Oryza sativa Japonica Group] 595 9.42988e-60
whsh_all.Contig74 -   510 bp 2 Clones Os06g0152200 [Oryza sativa (japonica cultivar-group)] >gi|3618316|dbj|BAA33204.1| zinc finger protein [Oryza sativa Japonica Group] >gi|55296631|dbj|BAD69333.1| zinc-finger protein R2931 [Oryza sativa Japonica Group] >gi|55297284|dbj|BAD69069.1| zinc-finger protein R2931 [Oryza sativa Japonica Group] >gi|113594874|dbj|BAF18748.1| Os06g0152200 [Oryza sativa (japonica cultivar-group)] >gi|125554117|gb|EAY99722.1| hypothetical protein OsI_21707 [Oryza sativa Indica Group] >gi|125596076|gb|EAZ35856.1| hypothetical protein OsJ_019339 [Oryza sativa (japonica cultivar-group)] >gi|215678973|dbj|BAG96403.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215701456|dbj|BAG92880.1| unnamed protein product [Oryza sativa Japonica Group] 171 5.13465e-11
whsh_all.Contig75 -   146 bp 2 Clones hypothetical protein OsI_05919 [Oryza sativa Indica Group] 235 1.72203e-18
whsh_all.Contig76 -   251 bp 2 Clones RecName: Full=Thioredoxin M-type, chloroplastic; Short=Trx-M; Flags: Precursor >gi|4138592|emb|CAA06735.1| thioredoxin M [Triticum aestivum] >gi|56709480|emb|CAI35908.1| thioredoxin M precursor [Triticum turgidum subsp. durum] 111 0.0
whsh_all.Contig77 -   283 bp 2 Clones RecName: Full=Thioredoxin M-type, chloroplastic; Short=Trx-M; Flags: Precursor >gi|4138592|emb|CAA06735.1| thioredoxin M [Triticum aestivum] >gi|56709480|emb|CAI35908.1| thioredoxin M precursor [Triticum turgidum subsp. durum] 111 0.0
whsh_all.Contig78 -   386 bp 2 Clones enolase; phosphopyruvate hydratase [Escherichia coli] 511 5.44384e-53
whsh_all.Contig79 -   205 bp 2 Clones enolase; phosphopyruvate hydratase [Escherichia coli] 511 5.44384e-53
whsh_all.Contig80 -   222 bp 2 Clones enolase; phosphopyruvate hydratase [Escherichia coli] 511 5.44384e-53
whsh_all.Contig81 -   208 bp 2 Clones sulfate adenylyltransferase subunit 1 [Cellulophaga sp. MED134] >gi|85816501|gb|EAQ37689.1| sulfate adenylyltransferase subunit 1 [Dokdonia donghaensis MED134] 78 2.6
whsh_all.Contig82 -   160 bp 2 Clones sulfate adenylyltransferase subunit 1 [Cellulophaga sp. MED134] >gi|85816501|gb|EAQ37689.1| sulfate adenylyltransferase subunit 1 [Dokdonia donghaensis MED134] 78 2.6
whsh_all.Contig83 -   454 bp 2 Clones hypothetical protein [Zea mays] 194 9.54461e-14
whsh_all.Contig84 -   195 bp 2 Clones predicted protein [Aspergillus terreus NIH2624] >gi|114197518|gb|EAU39218.1| predicted protein [Aspergillus terreus NIH2624] 74 7.9
whsh_all.Contig85 -   536 bp 2 Clones unknown [Zea mays] 365 1.88682e-33
whsh_all.Contig86 -   172 bp 2 Clones unknown [Zea mays] 365 1.88682e-33
whsh_all.Contig87 -   986 bp 2 Clones unknown [Zea mays] 365 1.88682e-33
whsh_all.Contig88 -   251 bp 2 Clones hypothetical protein OsI_15668 [Oryza sativa Indica Group] 74 7.7
whsh_all.Contig89 -   151 bp 2 Clones hypothetical protein OsI_15668 [Oryza sativa Indica Group] 74 7.7
whsh_all.Contig90 -   348 bp 2 Clones conserved hypothetical protein [uncultured proteobacterium QS1] 77 3.5
whsh_all.Contig91 -   438 bp 2 Clones hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124397152|emb|CAK62659.1| unnamed protein product [Paramecium tetraurelia] 75 5.9
whsh_all.Contig92 -   181 bp 2 Clones hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124397152|emb|CAK62659.1| unnamed protein product [Paramecium tetraurelia] 75 5.9
whsh_all.Contig93 -   168 bp 2 Clones hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124397152|emb|CAK62659.1| unnamed protein product [Paramecium tetraurelia] 75 5.9
whsh_all.Contig94 -   567 bp 2 Clones putative chloroplast chlorophyll a/b binding protein [Solanum nigrum] 672 5.55109e-69
whsh_all.Contig95 -   184 bp 2 Clones unnamed protein product [Ostreococcus tauri] 85 0.4
whsh_all.Contig96 -   263 bp 2 Clones unnamed protein product [Ostreococcus tauri] 85 0.4
whsh_all.Contig97 -   419 bp 2 Clones glycosyltransferase, MGT family [Chthoniobacter flavus Ellin428] >gi|196225408|gb|EDY19916.1| glycosyltransferase, MGT family [Chthoniobacter flavus Ellin428] 81 1.1
whsh_all.Contig98 -   188 bp 2 Clones glycosyltransferase, MGT family [Chthoniobacter flavus Ellin428] >gi|196225408|gb|EDY19916.1| glycosyltransferase, MGT family [Chthoniobacter flavus Ellin428] 81 1.1
whsh_all.Contig99 -   1030 bp 2 Clones hypothetical protein OsJ_012436 [Oryza sativa (japonica cultivar-group)] 215 1.76489e-15
whsh_all.Contig100 -   135 bp 2 Clones hypothetical protein OsJ_012436 [Oryza sativa (japonica cultivar-group)] 215 1.76489e-15
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