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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig List

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Hit Count : 1946
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Contig Registered year Tissue Sequence Clone Homology (BLAST )
Top hit (Definition) Score E-Value
Wh_VWD_all.Contig1
( singlet )
2003 Shoot grown with dessication   805 bp 1 Clones Os08g0411200 [Oryza sativa (japonica cultivar-group)] >gi|113623755|dbj|BAF23700.1| Os08g0411200 [Oryza sativa (japonica cultivar-group)] >gi|215767987|dbj|BAH00216.1| unnamed protein product [Oryza sativa Japonica Group] 713 2.10376e-73
Wh_VWD_all.Contig2
( singlet )
2003 Shoot grown with dessication   731 bp 1 Clones hypothetical protein OsI_28383 [Oryza sativa Indica Group] 579 6.08361e-58
Wh_VWD_all.Contig3
( singlet )
2003 Shoot grown with dessication   543 bp 1 Clones hypothetical protein OsI_17784 [Oryza sativa Indica Group] >gi|125591947|gb|EAZ32297.1| hypothetical protein OsJ_015780 [Oryza sativa (japonica cultivar-group)] 731 7.24377e-76
Wh_VWD_all.Contig4
( singlet )
2003 Shoot grown with dessication   823 bp 1 Clones Os03g0717900 [Oryza sativa (japonica cultivar-group)] >gi|108710769|gb|ABF98564.1| expressed protein [Oryza sativa (japonica cultivar-group)] >gi|113549555|dbj|BAF12998.1| Os03g0717900 [Oryza sativa (japonica cultivar-group)] >gi|215704521|dbj|BAG94154.1| unnamed protein product [Oryza sativa Japonica Group] 818 1.46702e-85
Wh_VWD_all.Contig5
( singlet )
2003 Shoot grown with dessication   263 bp 1 Clones hypothetical protein OsJ_012034 [Oryza sativa (japonica cultivar-group)] 87 0.2
Wh_VWD_all.Contig6
( singlet )
2003 Shoot grown with dessication   735 bp 1 Clones hypothetical protein OsI_17116 [Oryza sativa Indica Group] 486 3.76543e-47
Wh_VWD_all.Contig7
( singlet )
2003 Shoot grown with dessication   413 bp 1 Clones stress responsive protein [Triticum aestivum] 188 4.71443e-13
Wh_VWD_all.Contig8 2003 Shoot grown with dessication   450 bp 2 Clones hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124412814|emb|CAK77971.1| unnamed protein product [Paramecium tetraurelia] 84 0.5
Wh_VWD_all.Contig9 2003 Shoot grown with dessication   462 bp 2 Clones hypothetical protein OsI_18385 [Oryza sativa Indica Group] >gi|125592747|gb|EAZ32806.1| hypothetical protein OsJ_016289 [Oryza sativa (japonica cultivar-group)] 149 1.55636e-08
Wh_VWD_all.Contig10 2003 Shoot grown with dessication   573 bp 2 Clones DNA binding protein [Zea mays] 128 6.89912e-06
Wh_VWD_all.Contig11 2003 Shoot grown with dessication   949 bp 2 Clones hypothetical protein OsJ_012816 [Oryza sativa (japonica cultivar-group)] 1109 3.36811e-119
Wh_VWD_all.Contig12 2003 Shoot grown with dessication   532 bp 2 Clones hypothetical protein OsI_11365 [Oryza sativa Indica Group] 424 2.6137e-40
Wh_VWD_all.Contig13 2003 Shoot grown with dessication   994 bp 2 Clones haloacid dehalogenase-like hydrolase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] 855 1.02973e-89
Wh_VWD_all.Contig14 2003 Shoot grown with dessication   445 bp 2 Clones nucleoside diphosphate kinase 4 [Zea mays] 272 8.72496e-23
Wh_VWD_all.Contig15 2003 Shoot grown with dessication   1288 bp 2 Clones predicted protein [Chlamydomonas reinhardtii] >gi|158270268|gb|EDO96148.1| predicted protein [Chlamydomonas reinhardtii] 81 8.5
Wh_VWD_all.Contig16 2003 Shoot grown with dessication   1104 bp 2 Clones lycopene beta-cyclase [Zea mays] 1502 1.15388e-164
Wh_VWD_all.Contig17 2003 Shoot grown with dessication   775 bp 2 Clones hCG1997303, isoform CRA_d [Homo sapiens] 93 0.1
Wh_VWD_all.Contig18 2003 Shoot grown with dessication   468 bp 2 Clones hypothetical protein OsI_09704 [Oryza sativa Indica Group] 86 0.0
Wh_VWD_all.Contig19 2003 Shoot grown with dessication   398 bp 2 Clones hypothetical protein OsJ_010043 [Oryza sativa (japonica cultivar-group)] 288 1.22078e-24
Wh_VWD_all.Contig20 2003 Shoot grown with dessication   923 bp 2 Clones polyubiquitin containing 7 ubiquitin monomers [Zea mays] 635 1.60731e-113
Wh_VWD_all.Contig21 2003 Shoot grown with dessication   825 bp 2 Clones ligA [Zea mays] 807 2.76668e-84
Wh_VWD_all.Contig22 2003 Shoot grown with dessication   871 bp 2 Clones dehydroascorbate reductase [Triticum aestivum] 1108 3.80942e-119
Wh_VWD_all.Contig23 2003 Shoot grown with dessication   745 bp 2 Clones putative 30S ribosomal protein S13 [Oryza sativa (japonica cultivar-group)] >gi|108710647|gb|ABF98442.1| 30S ribosomal protein S13, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|164375541|gb|ABY52938.1| chloroplast 30S ribosomal protein S13 precursor [Oryza sativa Japonica Group] 733 8.75147e-76
Wh_VWD_all.Contig24 2003 Shoot grown with dessication   768 bp 2 Clones Cu/Zn superoxide dismutase [Triticum aestivum] 813 4.92576e-85
Wh_VWD_all.Contig25 2003 Shoot grown with dessication   1375 bp 2 Clones Os02g0623500 [Oryza sativa (japonica cultivar-group)] >gi|48716234|dbj|BAD23770.1| putative lysyl-tRNA synthetase [Oryza sativa Japonica Group] >gi|113537003|dbj|BAF09386.1| Os02g0623500 [Oryza sativa (japonica cultivar-group)] >gi|215694818|dbj|BAG90009.1| unnamed protein product [Oryza sativa Japonica Group] 1667 0
Wh_VWD_all.Contig26 2003 Shoot grown with dessication   220 bp 2 Clones predicted protein [Physcomitrella patens subsp. patens] >gi|162677251|gb|EDQ63724.1| predicted protein [Physcomitrella patens subsp. patens] 76 4.5
Wh_VWD_all.Contig27 2003 Shoot grown with dessication   1029 bp 2 Clones Os02g0634900 [Oryza sativa (japonica cultivar-group)] >gi|49387541|dbj|BAD25097.1| alpha 2 subunit of 20S proteasome [Oryza sativa Japonica Group] >gi|113537047|dbj|BAF09430.1| Os02g0634900 [Oryza sativa (japonica cultivar-group)] >gi|215741147|dbj|BAG97642.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765416|dbj|BAG87113.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218191233|gb|EEC73660.1| hypothetical protein OsI_08192 [Oryza sativa Indica Group] 1000 7.06746e-119
Wh_VWD_all.Contig28 2003 Shoot grown with dessication   855 bp 2 Clones RecName: Full=V-type proton ATPase subunit B 2; Short=V-ATPase subunit B 2; AltName: Full=Vacuolar proton pump subunit B 2 >gi|167110|gb|AAA81331.1| vacuolar ATPase B subunit [Hordeum vulgare] 1076 1.91536e-115
Wh_VWD_all.Contig29 2003 Shoot grown with dessication   494 bp 2 Clones O6-methylguanine-DNA methyltransferase/endonuclease V [Blastopirellula marina DSM 3645] >gi|87286507|gb|EAQ78414.1| O6-methylguanine-DNA methyltransferase/endonuclease V [Blastopirellula marina DSM 3645] 77 3.6
Wh_VWD_all.Contig30 2003 Shoot grown with dessication   405 bp 2 Clones hypothetical protein OsJ_004258 [Oryza sativa (japonica cultivar-group)] 158 1.43705e-09
Wh_VWD_all.Contig31 2003 Shoot grown with dessication   562 bp 2 Clones Os10g0579200 [Oryza sativa (japonica cultivar-group)] >gi|12039393|gb|AAG46179.1|AC018727_31 putative sugar transporter protein [Oryza sativa] >gi|31433692|gb|AAP55176.1| Sugar transporter family protein, expressed [Oryza sativa (japonica cultivar-group)] >gi|113640037|dbj|BAF27342.1| Os10g0579200 [Oryza sativa (japonica cultivar-group)] >gi|215716973|dbj|BAG95336.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218185078|gb|EEC67505.1| hypothetical protein OsI_34793 [Oryza sativa Indica Group] 833 1.15049e-87
Wh_VWD_all.Contig32 2003 Shoot grown with dessication   1132 bp 2 Clones Os09g0436700 [Oryza sativa (japonica cultivar-group)] >gi|51090649|dbj|BAD36430.1| serine protease-like protein [Oryza sativa Japonica Group] >gi|113631494|dbj|BAF25175.1| Os09g0436700 [Oryza sativa (japonica cultivar-group)] >gi|125605819|gb|EAZ44855.1| hypothetical protein OsJ_028338 [Oryza sativa (japonica cultivar-group)] >gi|215697857|dbj|BAG92050.1| unnamed protein product [Oryza sativa Japonica Group] 969 7.58011e-103
Wh_VWD_all.Contig33 2003 Shoot grown with dessication   1253 bp 2 Clones hypothetical protein OsJ_003504 [Oryza sativa (japonica cultivar-group)] 1636 3.98013e-180
Wh_VWD_all.Contig34 2003 Shoot grown with dessication   499 bp 2 Clones hypothetical protein [Zea mays] 123 1.77191e-05
Wh_VWD_all.Contig44 2003 Shoot grown with dessication   971 bp 2 Clones citrate synthase [Oryza sativa] 1203 4.40497e-130
Wh_VWD_all.Contig35 2003 Shoot grown with dessication   1292 bp 2 Clones 40S ribosomal protein SA [Zea mays] 1128 3.35462e-121
Wh_VWD_all.Contig36 2003 Shoot grown with dessication   616 bp 2 Clones ubiquitin-conjugating enzyme [Lolium temulentum] 592 1.29531e-59
Wh_VWD_all.Contig37 2003 Shoot grown with dessication   234 bp 2 Clones unknown [Zea mays] >gi|195626476|gb|ACG35068.1| hypothetical protein [Zea mays] 113 0.0
Wh_VWD_all.Contig38 2003 Shoot grown with dessication   724 bp 2 Clones MGC84671 protein [Xenopus laevis] >gi|49257878|gb|AAH74429.1| MGC84671 protein [Xenopus laevis] 110 0.0
Wh_VWD_all.Contig39 2003 Shoot grown with dessication   856 bp 2 Clones Os02g0321900 [Oryza sativa (japonica cultivar-group)] >gi|50252685|dbj|BAD28853.1| putative ribosomal protein L10a [Oryza sativa Japonica Group] >gi|113536221|dbj|BAF08604.1| Os02g0321900 [Oryza sativa (japonica cultivar-group)] >gi|215692826|dbj|BAG88217.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215734901|dbj|BAG95623.1| unnamed protein product [Oryza sativa Japonica Group] 925 6.19016e-98
Wh_VWD_all.Contig40 2003 Shoot grown with dessication   1000 bp 2 Clones hypothetical protein OsI_29850 [Oryza sativa Indica Group] 1199 1.343e-129
Wh_VWD_all.Contig41 2003 Shoot grown with dessication   624 bp 2 Clones hypothetical protein LOC100216899 [Zea mays] >gi|194696944|gb|ACF82556.1| unknown [Zea mays] >gi|195617290|gb|ACG30475.1| 50S ribosomal protein L31 [Zea mays] >gi|195625392|gb|ACG34526.1| 50S ribosomal protein L31 [Zea mays] 542 8.45318e-54
Wh_VWD_all.Contig42 2003 Shoot grown with dessication   530 bp 2 Clones unnamed protein product [Tetraodon nigroviridis] 62 2.6
Wh_VWD_all.Contig43 2003 Shoot grown with dessication   768 bp 2 Clones pore-forming toxin-like protein Hfr-2 [Triticum aestivum] 354 8.18556e-32
Wh_VWD_all.Contig45 2003 Shoot grown with dessication   745 bp 2 Clones predicted protein [Physcomitrella patens subsp. patens] >gi|162663865|gb|EDQ50607.1| predicted protein [Physcomitrella patens subsp. patens] 69 0.0
Wh_VWD_all.Contig46 2003 Shoot grown with dessication   732 bp 2 Clones protein S2 - Phalaris coerulescens 687 3.92428e-72
Wh_VWD_all.Contig47 2003 Shoot grown with dessication   1104 bp 2 Clones Os03g0165400 [Oryza sativa (japonica cultivar-group)] >gi|122247496|sp|Q10RB4|BGAL5_ORYSJ RecName: Full=Beta-galactosidase 5; Short=Lactase 5; Flags: Precursor >gi|108706354|gb|ABF94149.1| Beta-galactosidase precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113547539|dbj|BAF10982.1| Os03g0165400 [Oryza sativa (japonica cultivar-group)] >gi|215717073|dbj|BAG95436.1| unnamed protein product [Oryza sativa Japonica Group] 1079 1.29364e-115
Wh_VWD_all.Contig48 2003 Shoot grown with dessication   586 bp 2 Clones unknown [Zea mays] 535 4.6685e-53
Wh_VWD_all.Contig49 2003 Shoot grown with dessication   1175 bp 2 Clones NADP-dependent malic enzyme 1 [Triticum aestivum] 1405 2.22438e-153
Wh_VWD_all.Contig50 2003 Shoot grown with dessication   1293 bp 2 Clones granule-bound starch synthase I [Oryza rufipogon] 110 0.0
Wh_VWD_all.Contig51 2003 Shoot grown with dessication   646 bp 2 Clones Os08g0566600 [Oryza sativa (japonica cultivar-group)] >gi|42409090|dbj|BAD10341.1| unknown protein [Oryza sativa Japonica Group] >gi|113624511|dbj|BAF24456.1| Os08g0566600 [Oryza sativa (japonica cultivar-group)] >gi|125562613|gb|EAZ08061.1| hypothetical protein OsI_30326 [Oryza sativa Indica Group] >gi|125604372|gb|EAZ43697.1| hypothetical protein OsJ_027180 [Oryza sativa (japonica cultivar-group)] >gi|215694676|dbj|BAG89867.1| unnamed protein product [Oryza sativa Japonica Group] 486 2.83389e-47
Wh_VWD_all.Contig52 2003 Shoot grown with dessication   976 bp 2 Clones Os01g0195500 [Oryza sativa (japonica cultivar-group)] >gi|113531822|dbj|BAF04205.1| Os01g0195500 [Oryza sativa (japonica cultivar-group)] 529 4.161e-80
Wh_VWD_all.Contig53 2003 Shoot grown with dessication   547 bp 2 Clones cyclophilin [Triticum aestivum] >gi|32401384|gb|AAP80861.1| cyclophilin [Triticum aestivum] 497 1.00378e-48
Wh_VWD_all.Contig54 2003 Shoot grown with dessication   763 bp 2 Clones hypothetical protein OsI_12318 [Oryza sativa Indica Group] 445 2.25879e-42
Wh_VWD_all.Contig55 2003 Shoot grown with dessication   567 bp 2 Clones hypothetical protein OsI_11300 [Oryza sativa Indica Group] 528 2.76778e-52
Wh_VWD_all.Contig56 2003 Shoot grown with dessication   621 bp 2 Clones thioredoxin H-type [Zea mays] 327 7.11479e-29
Wh_VWD_all.Contig57 2003 Shoot grown with dessication   1108 bp 2 Clones Os12g0169700 [Oryza sativa (japonica cultivar-group)] >gi|77553136|gb|ABA95932.1| expressed protein [Oryza sativa (japonica cultivar-group)] >gi|113648772|dbj|BAF29284.1| Os12g0169700 [Oryza sativa (japonica cultivar-group)] >gi|125535918|gb|EAY82406.1| hypothetical protein OsI_37621 [Oryza sativa Indica Group] >gi|125578641|gb|EAZ19787.1| hypothetical protein OsJ_033996 [Oryza sativa (japonica cultivar-group)] >gi|215737384|dbj|BAG96313.1| unnamed protein product [Oryza sativa Japonica Group] 1290 4.43439e-140
Wh_VWD_all.Contig58 2003 Shoot grown with dessication   343 bp 2 Clones type II LHCI [Lolium temulentum] 194 9.43793e-14