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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig List

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Hit Count : 2682
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Contig Registered year Tissue Sequence Clone Homology (BLAST )
Top hit (Definition) Score E-Value
Wh_RDr_all.Contig7
( singlet )
2003 Root of dessiccated seed   801 bp 1 Clones polyprotein [Oryza australiensis] 532 2.03197e-52
Wh_RDr_all.Contig1
( singlet )
2003 Root of dessiccated seed   753 bp 1 Clones Os09g0299200 [Oryza sativa (japonica cultivar-group)] >gi|50725048|dbj|BAD33181.1| putative transfactor [Oryza sativa Japonica Group] >gi|50725525|dbj|BAD32994.1| putative transfactor [Oryza sativa Japonica Group] >gi|113631046|dbj|BAF24727.1| Os09g0299200 [Oryza sativa (japonica cultivar-group)] >gi|215737042|dbj|BAG95971.1| unnamed protein product [Oryza sativa Japonica Group] 613 7.28214e-62
Wh_RDr_all.Contig2
( singlet )
2003 Root of dessiccated seed   723 bp 1 Clones hypothetical protein OsJ_024137 [Oryza sativa (japonica cultivar-group)] 517 9.15547e-51
Wh_RDr_all.Contig3
( singlet )
2003 Root of dessiccated seed   656 bp 1 Clones ramosa 3-like protein [Phalaris canariensis] 324 1.77991e-28
Wh_RDr_all.Contig4
( singlet )
2003 Root of dessiccated seed   773 bp 1 Clones hypothetical protein OsI_38200 [Oryza sativa Indica Group] 684 6.1247e-74
Wh_RDr_all.Contig5
( singlet )
2003 Root of dessiccated seed   726 bp 1 Clones hypothetical protein OsI_20105 [Oryza sativa Indica Group] 1004 3.12442e-107
Wh_RDr_all.Contig6
( singlet )
2003 Root of dessiccated seed   205 bp 1 Clones phenylalanine ammonia-lyase [Hordeum vulgare subsp. vulgare] 220 9.2534e-17
Wh_RDr_all.Contig8
( singlet )
2003 Root of dessiccated seed   711 bp 1 Clones senescence-associated protein DH [Zea mays] >gi|54208706|gb|AAV31120.1| senescence-associated protein DH [Zea mays] >gi|194700856|gb|ACF84512.1| unknown [Zea mays] >gi|195639304|gb|ACG39120.1| senescence-associated protein DH [Zea mays] 677 2.46822e-69
Wh_RDr_all.Contig9
( singlet )
2003 Root of dessiccated seed   733 bp 1 Clones hypothetical protein OsI_10296 [Oryza sativa Indica Group] 591 2.46991e-59
Wh_RDr_all.Contig10
( singlet )
2003 Root of dessiccated seed   699 bp 1 Clones ramosa 3-like protein [Phalaris canariensis] 173 8.81529e-17
Wh_RDr_all.Contig11
( singlet )
2003 Root of dessiccated seed   183 bp 1 Clones ramosa 3-like protein [Phalaris canariensis] 173 8.81529e-17
Wh_RDr_all.Contig12
( singlet )
2003 Root of dessiccated seed   656 bp 1 Clones dehydrin-/LEA group 2-like protein [Lophopyrum elongatum] 309 9.76669e-27
Wh_RDr_all.Contig13
( singlet )
2003 Root of dessiccated seed   694 bp 1 Clones Os07g0615200 [Oryza sativa (japonica cultivar-group)] >gi|23237931|dbj|BAC16504.1| unknown protein [Oryza sativa Japonica Group] >gi|113611804|dbj|BAF22182.1| Os07g0615200 [Oryza sativa (japonica cultivar-group)] >gi|215696974|dbj|BAG90968.1| unnamed protein product [Oryza sativa Japonica Group] 692 4.30404e-71
Wh_RDr_all.Contig14 2003 Root of dessiccated seed   926 bp 2 Clones Os01g0212400 [Oryza sativa (japonica cultivar-group)] >gi|56201517|dbj|BAD73036.1| unknown protein [Oryza sativa Japonica Group] >gi|113531909|dbj|BAF04292.1| Os01g0212400 [Oryza sativa (japonica cultivar-group)] >gi|215694792|dbj|BAG89983.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218187733|gb|EEC70160.1| hypothetical protein OsI_00872 [Oryza sativa Indica Group] 624 5.25137e-103
Wh_RDr_all.Contig15 2003 Root of dessiccated seed   760 bp 2 Clones Os03g0149200 [Oryza sativa (japonica cultivar-group)] >gi|27261473|gb|AAN87739.1| Unknown protein [Oryza sativa (japonica cultivar-group)] >gi|108706200|gb|ABF93995.1| expressed protein [Oryza sativa (japonica cultivar-group)] >gi|113547442|dbj|BAF10885.1| Os03g0149200 [Oryza sativa (japonica cultivar-group)] >gi|215769423|dbj|BAH01652.1| unnamed protein product [Oryza sativa Japonica Group] 425 4.70986e-40
Wh_RDr_all.Contig16 2003 Root of dessiccated seed   642 bp 2 Clones hypothetical protein nfa9000 [Nocardia farcinica IFM 10152] >gi|54014375|dbj|BAD55745.1| hypothetical protein [Nocardia farcinica IFM 10152] 78 5.7
Wh_RDr_all.Contig17 2003 Root of dessiccated seed   506 bp 2 Clones early nodulin 93 [Zea mays] >gi|195621944|gb|ACG32802.1| early nodulin 93 [Zea mays] 365 2.68479e-34
Wh_RDr_all.Contig18 2003 Root of dessiccated seed   531 bp 2 Clones hypothetical protein OsJ_011832 [Oryza sativa (japonica cultivar-group)] 198 4.20198e-14
Wh_RDr_all.Contig19 2003 Root of dessiccated seed   461 bp 2 Clones protein binding protein [Zea mays] 163 3.7207e-10
Wh_RDr_all.Contig20 2003 Root of dessiccated seed   760 bp 2 Clones blue copper-binding protein [Dasypyrum villosum] 586 1.00923e-58
Wh_RDr_all.Contig21 2003 Root of dessiccated seed   581 bp 2 Clones Os04g0529800 [Oryza sativa (japonica cultivar-group)] >gi|21742093|emb|CAD41204.1| OSJNBa0074L08.15 [Oryza sativa (japonica cultivar-group)] >gi|32492276|emb|CAE03857.1| OSJNBa0081C01.3 [Oryza sativa (japonica cultivar-group)] >gi|113564954|dbj|BAF15297.1| Os04g0529800 [Oryza sativa (japonica cultivar-group)] >gi|116312023|emb|CAJ86379.1| OSIGBa0155K17.6 [Oryza sativa (indica cultivar-group)] >gi|125549113|gb|EAY94935.1| hypothetical protein OsI_16741 [Oryza sativa Indica Group] >gi|125591070|gb|EAZ31420.1| hypothetical protein OsJ_014903 [Oryza sativa (japonica cultivar-group)] >gi|215697555|dbj|BAG91549.1| unnamed protein product [Oryza sativa Japonica Group] 378 7.26451e-35
Wh_RDr_all.Contig22 2003 Root of dessiccated seed   796 bp 2 Clones calnexin precursor [Zea mays] 327 1.98422e-41
Wh_RDr_all.Contig23 2003 Root of dessiccated seed   832 bp 2 Clones chloroplast channel forming outer membrane protein [Zea mays] 559 1.61565e-55
Wh_RDr_all.Contig24 2003 Root of dessiccated seed   1107 bp 2 Clones Os04g0635300 [Oryza sativa (japonica cultivar-group)] >gi|113565577|dbj|BAF15920.1| Os04g0635300 [Oryza sativa (japonica cultivar-group)] 272 4.90546e-22
Wh_RDr_all.Contig25 2003 Root of dessiccated seed   772 bp 2 Clones Os04g0379900 [Oryza sativa (japonica cultivar-group)] >gi|113564165|dbj|BAF14508.1| Os04g0379900 [Oryza sativa (japonica cultivar-group)] >gi|215694485|dbj|BAG89478.1| unnamed protein product [Oryza sativa Japonica Group] 944 3.20364e-100
Wh_RDr_all.Contig26 2003 Root of dessiccated seed   834 bp 2 Clones ascorbate peroxidase [Hordeum vulgare] 956 1.50166e-101
Wh_RDr_all.Contig27 2003 Root of dessiccated seed   592 bp 2 Clones cold-shock DNA-binding domain-containing protein [Serratia proteamaculans 568] >gi|157323056|gb|ABV42153.1| cold-shock DNA-binding domain protein [Serratia proteamaculans 568] 290 1.23403e-24
Wh_RDr_all.Contig28 2003 Root of dessiccated seed   453 bp 2 Clones allene oxide synthase [Hordeum vulgare subsp. vulgare] 188 4.75751e-13
Wh_RDr_all.Contig29 2003 Root of dessiccated seed   515 bp 2 Clones hypothetical protein OsJ_005768 [Oryza sativa (japonica cultivar-group)] 184 1.63162e-12
Wh_RDr_all.Contig30 2003 Root of dessiccated seed   1178 bp 2 Clones BRI1-KD interacting protein 103 [Oryza sativa Japonica Group] >gi|50252883|dbj|BAD29114.1| BRI1-KD interacting protein 103 [Oryza sativa Japonica Group] 605 1.30082e-60
Wh_RDr_all.Contig31 2003 Root of dessiccated seed   678 bp 2 Clones Os06g0594100 [Oryza sativa (japonica cultivar-group)] >gi|50725401|dbj|BAD32875.1| putative 3-hydroxyisobutyryl-coenzyme A hydrolase [Oryza sativa Japonica Group] >gi|50725651|dbj|BAD33117.1| putative 3-hydroxyisobutyryl-coenzyme A hydrolase [Oryza sativa Japonica Group] >gi|113596018|dbj|BAF19892.1| Os06g0594100 [Oryza sativa (japonica cultivar-group)] >gi|215704240|dbj|BAG93080.1| unnamed protein product [Oryza sativa Japonica Group] 893 2.03641e-94
Wh_RDr_all.Contig32 2003 Root of dessiccated seed   291 bp 2 Clones germin-like protein 4d [Hordeum vulgare subsp. vulgare] 180 4.0748e-12
Wh_RDr_all.Contig33 2003 Root of dessiccated seed   858 bp 2 Clones glucose-6-phosphate isomerase [Triticum aestivum] 1420 2.4727e-155
Wh_RDr_all.Contig34 2003 Root of dessiccated seed   728 bp 2 Clones glucose-6-phosphate isomerase [Triticum aestivum] 1420 2.4727e-155
Wh_RDr_all.Contig35 2003 Root of dessiccated seed   588 bp 2 Clones Os08g0536300 [Oryza sativa (japonica cultivar-group)] >gi|113624332|dbj|BAF24277.1| Os08g0536300 [Oryza sativa (japonica cultivar-group)] 354 4.54283e-32
Wh_RDr_all.Contig36 2003 Root of dessiccated seed   719 bp 2 Clones hypothetical protein OsI_09630 [Oryza sativa Indica Group] 269 5.18706e-22
Wh_RDr_all.Contig37 2003 Root of dessiccated seed   857 bp 2 Clones Os03g0628800 [Oryza sativa (japonica cultivar-group)] >gi|108709940|gb|ABF97735.1| H1flk, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549179|dbj|BAF12622.1| Os03g0628800 [Oryza sativa (japonica cultivar-group)] >gi|215712242|dbj|BAG94369.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218193358|gb|EEC75785.1| hypothetical protein OsI_12704 [Oryza sativa Indica Group] 1007 1.91981e-107
Wh_RDr_all.Contig38 2003 Root of dessiccated seed   329 bp 2 Clones cytokinin-O-glucosyltransferase 2 [Zea mays] 326 4.73316e-29
Wh_RDr_all.Contig39 2003 Root of dessiccated seed   753 bp 2 Clones hypothetical protein OsI_22667 [Oryza sativa Indica Group] 576 6.33724e-67
Wh_RDr_all.Contig40 2003 Root of dessiccated seed   937 bp 2 Clones hypothetical protein OsI_38782 [Oryza sativa Indica Group] 297 4.77506e-25
Wh_RDr_all.Contig41 2003 Root of dessiccated seed   1282 bp 2 Clones Os10g0395000 [Oryza sativa (japonica cultivar-group)] >gi|20503052|gb|AAM22740.1|AC092388_24 putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] >gi|21263201|gb|AAM44878.1|AC122144_1 Putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] >gi|31431881|gb|AAP53593.1| serine/threonine-protein kinase NAK, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113639134|dbj|BAF26439.1| Os10g0395000 [Oryza sativa (japonica cultivar-group)] >gi|125574683|gb|EAZ15967.1| hypothetical protein OsJ_030176 [Oryza sativa (japonica cultivar-group)] 1446 4.42023e-158
Wh_RDr_all.Contig42 2003 Root of dessiccated seed   1222 bp 2 Clones Os03g0747300 [Oryza sativa (japonica cultivar-group)] >gi|14626285|gb|AAK71553.1|AC087852_13 unknown protein [Oryza sativa (japonica cultivar-group)] >gi|108711062|gb|ABF98857.1| HTH DNA-binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549728|dbj|BAF13171.1| Os03g0747300 [Oryza sativa (japonica cultivar-group)] >gi|125545710|gb|EAY91849.1| hypothetical protein OsI_13494 [Oryza sativa Indica Group] 1234 1.58749e-133
Wh_RDr_all.Contig43 2003 Root of dessiccated seed   671 bp 2 Clones succinate dehydrogenase [Triticum aestivum] 777 5.57245e-81
Wh_RDr_all.Contig44 2003 Root of dessiccated seed   679 bp 2 Clones hypothetical protein OsI_13368 [Oryza sativa Indica Group] 244 3.67043e-19
Wh_RDr_all.Contig45 2003 Root of dessiccated seed   547 bp 2 Clones histone H4 [Zea mays] 410 1.22989e-38
Wh_RDr_all.Contig46 2003 Root of dessiccated seed   575 bp 2 Clones hypothetical protein OsI_23177 [Oryza sativa Indica Group] 115 0.0
Wh_RDr_all.Contig47 2003 Root of dessiccated seed   1183 bp 2 Clones ALMT1-1135.1 [Secale cereale] 1149 9.40895e-175
Wh_RDr_all.Contig48 2003 Root of dessiccated seed   743 bp 2 Clones hypothetical protein BRAFLDRAFT_118632 [Branchiostoma floridae] >gi|210127287|gb|EEA74970.1| hypothetical protein BRAFLDRAFT_118632 [Branchiostoma floridae] 78 7.8
Wh_RDr_all.Contig49 2003 Root of dessiccated seed   852 bp 2 Clones immature spike ubiquitin-conjugating enzyme 2 [Triticum aestivum] 801 1.46073e-83
Wh_RDr_all.Contig50 2003 Root of dessiccated seed   965 bp 2 Clones serine esterase family protein [Zea mays] 936 3.97848e-99
Wh_RDr_all.Contig51 2003 Root of dessiccated seed   1330 bp 2 Clones serine/threonine protein kinase [Triticum aestivum] 1625 8.17881e-179
Wh_RDr_all.Contig52 2003 Root of dessiccated seed   590 bp 2 Clones Os05g0535700 [Oryza sativa (japonica cultivar-group)] >gi|47900417|gb|AAT39211.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|113579709|dbj|BAF18072.1| Os05g0535700 [Oryza sativa (japonica cultivar-group)] >gi|215692606|dbj|BAG88026.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215692940|dbj|BAG88360.1| unnamed protein product [Oryza sativa Japonica Group] 225 4.18953e-17
Wh_RDr_all.Contig53 2003 Root of dessiccated seed   950 bp 2 Clones hypothetical protein OsI_17662 [Oryza sativa Indica Group] 766 1.9976e-79
Wh_RDr_all.Contig54 2003 Root of dessiccated seed   633 bp 2 Clones SNAP-34 [Hordeum vulgare subsp. vulgare] 693 2.71491e-71
Wh_RDr_all.Contig55 2003 Root of dessiccated seed   443 bp 2 Clones predicted protein [Chlamydomonas reinhardtii] >gi|158276572|gb|EDP02344.1| predicted protein [Chlamydomonas reinhardtii] 80 1.5
Wh_RDr_all.Contig56 2003 Root of dessiccated seed   932 bp 2 Clones hypothetical protein OsI_08409 [Oryza sativa Indica Group] 1051 1.74894e-112
Wh_RDr_all.Contig57 2003 Root of dessiccated seed   524 bp 2 Clones hypothetical protein OsI_34071 [Oryza sativa Indica Group] 355 2.57914e-32
Wh_RDr_all.Contig58 2003 Root of dessiccated seed   597 bp 2 Clones cold acclimation protein WCOR80 [Triticum aestivum] 160 1.48571e-09
Wh_RDr_all.Contig59 2003 Root of dessiccated seed   1318 bp 2 Clones phosphoesterase [Zea mays] 1278 1.39279e-138
Wh_RDr_all.Contig60 2003 Root of dessiccated seed   1161 bp 2 Clones Os04g0439100 [Oryza sativa (japonica cultivar-group)] >gi|113564438|dbj|BAF14781.1| Os04g0439100 [Oryza sativa (japonica cultivar-group)] 1350 5.20222e-147
Wh_RDr_all.Contig61 2003 Root of dessiccated seed   738 bp 2 Clones galactinol synthase [Triticum aestivum] 869 1.46025e-91
Wh_RDr_all.Contig62 2003 Root of dessiccated seed   852 bp 2 Clones hypothetical protein [Oryza sativa Japonica Group] >gi|50725532|dbj|BAD33001.1| hypothetical protein [Oryza sativa Japonica Group] 529 5.10105e-52
Wh_RDr_all.Contig63 2003 Root of dessiccated seed   843 bp 2 Clones Os03g0171600 [Oryza sativa (japonica cultivar-group)] >gi|108706423|gb|ABF94218.1| kelch repeat-containing F-box family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|108706424|gb|ABF94219.1| kelch repeat-containing F-box family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|108706425|gb|ABF94220.1| kelch repeat-containing F-box family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113547584|dbj|BAF11027.1| Os03g0171600 [Oryza sativa (japonica cultivar-group)] >gi|125585086|gb|EAZ25750.1| hypothetical protein OsJ_009233 [Oryza sativa (japonica cultivar-group)] >gi|215692448|dbj|BAG87868.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215704271|dbj|BAG93111.1| unnamed protein product [Oryza sativa Japonica Group] 1125 3.85345e-121
Wh_RDr_all.Contig64 2003 Root of dessiccated seed   983 bp 2 Clones putative phosphatidylinositol 3,5-kinase [Oryza sativa (japonica cultivar-group)] >gi|108708656|gb|ABF96451.1| phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] 838 9.48975e-88
Wh_RDr_all.Contig65 2003 Root of dessiccated seed   674 bp 2 Clones RecName: Full=Probable prefoldin subunit 4; AltName: Full=VIP3 protein >gi|6996146|emb|CAB75507.1| VIP3 protein [Avena fatua] 515 1.35309e-50
Wh_RDr_all.Contig66 2003 Root of dessiccated seed   395 bp 2 Clones unnamed protein product [Tetraodon nigroviridis] 76 4.5
Wh_RDr_all.Contig67 2003 Root of dessiccated seed   771 bp 2 Clones hypothetical protein OsI_04752 [Oryza sativa Indica Group] 140 5.42964e-07
Wh_RDr_all.Contig68 2003 Root of dessiccated seed   1124 bp 2 Clones hypothetical protein OsI_32519 [Oryza sativa Indica Group] 1030 6.37937e-110
Wh_RDr_all.Contig69 2003 Root of dessiccated seed   640 bp 2 Clones hypothetical protein OsI_37697 [Oryza sativa Indica Group] 1033 1.03221e-110
Wh_RDr_all.Contig70 2003 Root of dessiccated seed   712 bp 2 Clones hypothetical protein OsI_18555 [Oryza sativa Indica Group] 1136 1.4733e-122
Wh_RDr_all.Contig71 2003 Root of dessiccated seed   866 bp 2 Clones hypothetical protein [Zea mays] 132 5.60949e-06
Wh_RDr_all.Contig72 2003 Root of dessiccated seed   366 bp 2 Clones equilibrative nucleoside transporter, putative [Pediculus humanus corporis] 80 1.5
Wh_RDr_all.Contig73 2003 Root of dessiccated seed   202 bp 2 Clones ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila SB210] >gi|89289597|gb|EAR87585.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila SB210] 82 0.9
Wh_RDr_all.Contig74 2003