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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 5467
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
CJ589587 rwhsc2a02 2003 3' Shoot grown with cold treatment 815bp Wh_SHC_all.Contig1774 MUGEST2003_all.Contig25427 MUGEST2003_all.Contig25427       hypothetical protein [Secale cereale] 909 3.86518e-96
CJ589588 rwhsc2a03 2003 3' Shoot grown with cold treatment 542bp Wh_SHC_all.Contig1306 MUGEST2003_all.Contig21946 MUGEST2003_all.Contig21946       unknown [Zea mays] 541 7.25474e-54
CJ589589 rwhsc2a04 2003 3' Shoot grown with cold treatment 647bp Wh_SHC_all.Contig2284 MUGEST2003_all.Contig18950 MUGEST2003_all.Contig18950       Os09g0458900 [Oryza sativa (japonica cultivar-group)] 208 4.68066e-15
CJ589590 rwhsc2a05 2003 3' Shoot grown with cold treatment 723bp Wh_SHC_all.Contig2042 MUGEST2003_all.Contig11454 MUGEST2003_all.Contig11454       hypothetical protein OsJ_007392 [Oryza sativa (japonica cultivar-group)] 701 4.00487e-72
CJ589591 rwhsc2a07 2003 3' Shoot grown with cold treatment 656bp Wh_SHC_all.Contig1305 MUGEST2003_all.Contig23564 MUGEST2003_all.Contig23564       unknown [Zea mays] 472 1.18209e-45
CJ589592 rwhsc2a08 2003 3' Shoot grown with cold treatment 105bp rwhsc2a08            
CJ589593 rwhsc2a10 2003 3' Shoot grown with cold treatment 467bp Wh_SHC_all.Contig2281 MUGEST2003_all.Contig24532 MUGEST2003_all.Contig24532       translation initiation factor eIF1 [synthetic construct] 363 2.32135e-33
CJ589594 rwhsc2a12 2003 3' Shoot grown with cold treatment 267bp Wh_SHC_all.Contig1304 MUGEST2003_all.Contig7762 MUGEST2003_all.Contig7762       PREDICTED: similar to cytochrome P450 2P3 [Strongylocentrotus purpuratus] 74 7.46048
CJ589595 rwhsc2a13 2003 3' Shoot grown with cold treatment 717bp Wh_SHC_all.Contig1433 MUGEST2003_all.Contig16153 MUGEST2003_all.Contig16153       Os11g0614400 [Oryza sativa (japonica cultivar-group)] 619 1.27947e-62
CJ589596 rwhsc2a14 2003 3' Shoot grown with cold treatment 479bp Wh_SHC_all.Contig2485 MUGEST2003_all.Contig23186 MUGEST2003_all.Contig23186       thioredoxin h [Triticum aestivum] 252 1.69534e-20
CJ589597 rwhsc2a15 2003 3' Shoot grown with cold treatment 834bp rwhsc2a15 MUGEST2003_all.Contig21990 MUGEST2003_all.Contig21990       putative MAPK protein kinase [Triticum aestivum] 790 2.50794e-82
CJ589598 rwhsc2a17 2003 3' Shoot grown with cold treatment 187bp Wh_SHC_all.Contig2156 MUGEST2003_all.Contig16139 MUGEST2003_all.Contig16139            
CJ589599 rwhsc2a18 2003 3' Shoot grown with cold treatment 637bp Wh_SHC_all.Contig1729 MUGEST2003_all.Contig24855 MUGEST2003_all.Contig24855       putative ribosomal protein L26 [Oryza sativa Japonica Group] 399 3.21493e-37
CJ589600 rwhsc2a20 2003 3' Shoot grown with cold treatment 830bp Wh_SHC_all.Contig1461 MUGEST2003_all.Contig19170 MUGEST2003_all.Contig19170       tryptophan synthase beta-subunit [Sorghum bicolor] 1092 2.38446e-117
CJ589601 rwhsc2a23 2003 3' Shoot grown with cold treatment 741bp Wh_SHC_all.Contig1680 MUGEST2003_all.Contig21185 MUGEST2003_all.Contig21185       Targeting protein for Xklp2 containing protein, expressed [Oryza sativa (japonica cultivar-group)] 454 1.84989e-43
CJ589602 rwhsc2a24 2003 3' Shoot grown with cold treatment 530bp Wh_SHC_all.Contig2509 MUGEST2003_all.Contig25265 MUGEST2003_all.Contig25265       acidic ribosomal protein P2 [Triticum aestivum] 312 2.46513e-27
CJ589603 rwhsc2b01 2003 3' Shoot grown with cold treatment 656bp Wh_SHC_all.Contig2530 MUGEST2003_all.Contig25234 MUGEST2003_all.Contig25234       gamma-thionin 356 3.33901e-32
CJ589604 rwhsc2b02 2003 3' Shoot grown with cold treatment 158bp Wh_SHC_all.Contig1751 MUGEST2003_all.Contig14846 MUGEST2003_all.Contig14846            
CJ589605 rwhsc2b03 2003 3' Shoot grown with cold treatment 758bp Wh_SHC_all.Contig2527 MUGEST2003_all.Contig25364 MUGEST2003_all.Contig25364       cyclophilin A-1 [Triticum aestivum] 577 1.06309e-57
CJ589606 rwhsc2b04 2003 3' Shoot grown with cold treatment 827bp Wh_SHC_all.Contig1219 MUGEST2003_all.Contig24992 MUGEST2003_all.Contig24992       Os01g0276100 [Oryza sativa (japonica cultivar-group)] 1000 1.10243e-106
CJ589607 rwhsc2b05 2003 3' Shoot grown with cold treatment 821bp Wh_SHC_all.Contig1220 MUGEST2003_all.Contig21530 MUGEST2003_all.Contig21530       erythrocyte binding protein [Plasmodium vivax SaI-1] 97 0.0562542
CJ589608 rwhsc2b07 2003 3' Shoot grown with cold treatment 325bp Wh_SHC_all.Contig2402 MUGEST2003_all.Contig25281 MUGEST2003_all.Contig25281       ubiquitin 210 1.27096e-15
CJ589609 rwhsc2b09 2003 3' Shoot grown with cold treatment 863bp Wh_SHC_all.Contig2201 MUGEST2003_all.Contig24610 MUGEST2003_all.Contig24610       hypothetical protein OsJ_025258 [Oryza sativa (japonica cultivar-group)] 1259 1.10871e-136
CJ589610 rwhsc2b12 2003 3' Shoot grown with cold treatment 603bp Wh_SHC_all.Contig1492 MUGEST2003_all.Contig24856 MUGEST2003_all.Contig24856       Profilin-1 581 2.23517e-58
CJ589611 rwhsc2b13 2003 3' Shoot grown with cold treatment 418bp Wh_SHC_all.Contig1467 MUGEST2003_all.Contig11464 MUGEST2003_all.Contig11464       OSIGBa0125M19.7 [Oryza sativa (indica cultivar-group)] 284 3.28412e-24
CJ589612 rwhsc2b14 2003 3' Shoot grown with cold treatment 760bp Wh_SHC_all.Contig1302 MUGEST2003_all.Contig7749 MUGEST2003_all.Contig7749       PHD zinc finger protein [Triticum aestivum] 425 4.5243e-40
CJ589613 rwhsc2b15 2003 3' Shoot grown with cold treatment 120bp rwhsc2b15       BC006779 protein [Mus musculus] 75 5.74541
CJ589614 rwhsc2b16 2003 3' Shoot grown with cold treatment 688bp Wh_SHC_all.Contig1785 MUGEST2003_all.Contig18871 MUGEST2003_all.Contig18871       ferritin 1 [Hordeum vulgare] 792 1.02509e-82
CJ589615 rwhsc2b18 2003 3' Shoot grown with cold treatment 503bp Wh_SHC_all.Contig1745 MUGEST2003_all.Contig14850 MUGEST2003_all.Contig14850       hypothetical protein OsJ_011039 [Oryza sativa (japonica cultivar-group)] 553 2.36677e-55
CJ589616 rwhsc2b20 2003 3' Shoot grown with cold treatment 733bp Wh_SHC_all.Contig2044 MUGEST2003_all.Contig19236 MUGEST2003_all.Contig19236       Os06g0667600 [Oryza sativa (japonica cultivar-group)] 651 2.60659e-66
CJ589617 rwhsc2b22 2003 3' Shoot grown with cold treatment 111bp rwhsc2b22       unnamed protein product [Vitis vinifera] 107 0.00112542
CJ589618 rwhsc2b23 2003 3' Shoot grown with cold treatment 820bp Wh_SHC_all.Contig2401 MUGEST2003_all.Contig25187 MUGEST2003_all.Contig25187       unknown [Zea mays] 614 6.31799e-62
CJ589619 rwhsc2b24 2003 3' Shoot grown with cold treatment 778bp Wh_SHC_all.Contig2401 MUGEST2003_all.Contig25187 MUGEST2003_all.Contig25187       hypothetical protein OsI_011990 [Oryza sativa (indica cultivar-group)] 610 1.64269e-61
CJ589620 rwhsc2c01 2003 3' Shoot grown with cold treatment 561bp Wh_SHC_all.Contig2417 MUGEST2003_all.Contig25294 MUGEST2003_all.Contig25294       triosephosphat-isomerase [Triticum aestivum] 594 5.73714e-60
CJ589621 rwhsc2c02 2003 3' Shoot grown with cold treatment 418bp Wh_SHC_all.Contig2147 MUGEST2003_all.Contig24962 MUGEST2003_all.Contig24962       unnamed protein product [Vitis vinifera] 500 2.94977e-49
CJ589622 rwhsc2c03 2003 3' Shoot grown with cold treatment 202bp rwhsc2c03       unknown [Zea mays] 125 9.08484e-06
CJ589623 rwhsc2c04 2003 3' Shoot grown with cold treatment 613bp Wh_SHC_all.Contig2400 MUGEST2003_all.Contig24398 MUGEST2003_all.Contig24398       Histone H2B.2 459 3.21927e-44
CJ589624 rwhsc2c07 2003 3' Shoot grown with cold treatment 258bp Wh_SHC_all.Contig2454 MUGEST2003_all.Contig23142 MUGEST2003_all.Contig23142       germin-like protein 1a [Hordeum vulgare subsp. vulgare] 373 1.61345e-34
CJ589625 rwhsc2c09 2003 3' Shoot grown with cold treatment 583bp rwhsc2c09 MUGEST2003_all.Contig19209 MUGEST2003_all.Contig19209       Os12g0506400 [Oryza sativa (japonica cultivar-group)] 587 4.15255e-59
CJ589626 rwhsc2c11 2003 3' Shoot grown with cold treatment 118bp rwhsc2c11       unknown [Zea mays] 84 0.519651
CJ589627 rwhsc2c12 2003 3' Shoot grown with cold treatment 364bp rwhsc2c12 MUGEST2003_all.Contig20010 MUGEST2003_all.Contig20010       Os05g0362300 [Oryza sativa (japonica cultivar-group)] 253 1.29295e-20
CJ589628 rwhsc2c13 2003 3' Shoot grown with cold treatment 536bp Wh_SHC_all.Contig2479 MUGEST2003_all.Contig25152 MUGEST2003_all.Contig25152       putative ribosomal protein S18 [Triticum aestivum] 535 3.46714e-53
CJ589629 rwhsc2c14 2003 3' Shoot grown with cold treatment 383bp Wh_SHC_all.Contig2479 MUGEST2003_all.Contig25152 MUGEST2003_all.Contig25152       putative ribosomal protein S18 [Triticum aestivum] 439 3.53264e-42
CJ589630 rwhsc2c15 2003 3' Shoot grown with cold treatment 776bp