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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download  -------------------------- How to Order Resources MTA Sample

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 3278
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
CJ730709 whsh1a03 5' - 167bp whsh_all.Contig878            
CJ730710 whsh1a06 5' - 103bp            
CJ730711 whsh1a08 5' - 289bp whsh_all.Contig876            
CJ730712 whsh1a09 5' - 253bp whsh_all.Contig1279       Ribulose bisphosphate carboxylase small chain clone 512 (RuBisCO small subunit) 182 2.27491e-12
CJ730713 whsh1a14 5' - 510bp whsh_all.Contig1072       hypothetical protein OsJ_016084 [Oryza sativa (japonica cultivar-group)] 93 0.0527501
CJ730714 whsh1a15 5' - 591bp whsh_all.Contig1276       Unknown (protein for MGC:35458) [Homo sapiens] 1023 1.16324e-109
CJ730715 whsh1a20 5' - 312bp whsh_all.Contig1266       chloroplast chlorophyll a-b binding protein 8 [Oryza sativa (indica cultivar-group)] 181 2.8806e-12
CJ730716 whsh1a22 5' - 414bp whsh_all.Contig1239       chlorophyll a/b-binding protein precursor [Hordeum vulgare] 431 2.96881e-41
CJ730717 whsh1b01 5' - 573bp whsh_all.Contig872       Os11g0171800 [Oryza sativa (japonica cultivar-group)] 310 4.43027e-31
CJ730718 whsh1b03 5' - 102bp            
CJ730719 whsh1b05 5' - 430bp whsh_all.Contig879       unknown [Zea mays] 254 1.0003e-20
CJ730720 whsh1b12 5' - 311bp whsh_all.Contig882       OSIGBa0140O07.4 [Oryza sativa (indica cultivar-group)] 103 0.00319227
CJ730721 whsh1b13 5' - 178bp whsh_all.Contig883            
CJ730722 whsh1b14 5' - 226bp whsh_all.Contig1108            
CJ730723 whsh1b15 5' - 103bp            
CJ730724 whsh1b16 5' - 644bp whsh_all.Contig1237       Ribulose bisphosphate carboxylase small chain PW9, chloroplast precursor (RuBisCO small subunit PW9) 686 1.72966e-70
CJ730725 whsh1b17 5' - 345bp whsh_all.Contig1255       plastocyanin precursor [Hordeum vulgare] 302 2.66898e-26
CJ730726 whsh1b18 5' - 642bp whsh_all.Contig873       blz-1 protein [Hordeum vulgare subsp. vulgare] 430 8.27403e-41
CJ730727 whsh1b20 5' - 123bp            
CJ730728 whsh1b21 5' - 516bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Beckmannia syzigachne] 804 2.02165e-84
CJ730729 whsh1b24 5' - 134bp whsh_all.Contig1275            
CJ730730 whsh1c01 5' - 196bp whsh_all.Contig1183            
CJ730731 whsh1c02 5' - 155bp whsh_all.Contig1231            
CJ730732 whsh1c06 5' - 321bp whsh_all.Contig974       hypothetical protein [Trypanosoma cruzi strain CL Brener] 73 9.81291
CJ730733 whsh1c08 5' - 191bp whsh_all.Contig1241       hypothetical protein [Oryza sativa (indica cultivar-group)] 325 5.9241e-29
CJ730734 whsh1c13 5' - 259bp whsh_all.Contig1208       cytochrome B6-F complex like-protein [Hordeum vulgare subsp. vulgare] 464 4.5103e-45
CJ730735 whsh1c15 5' - 266bp whsh_all.Contig1221       putative rubisco small subunit [Triticum turgidum subsp. durum] 309 4.21184e-27
CJ730736 whsh1c17 5' - 111bp            
CJ730737 whsh1c19 5' - 201bp            
CJ730738 whsh1c21 5' - 176bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Eremopyrum orientale] 225 2.2806e-17
CJ730739 whsh1c22 5' - 663bp whsh_all.Contig1078       translation initiation factor eIF1 [synthetic construct] 591 1.91184e-59
CJ730740 whsh1c23 5' - 567bp whsh_all.Contig889       unnamed protein product [Vitis vinifera] 349 1.52163e-31
CJ730741 whsh1d05 5' - 330bp whsh_all.Contig890       Seven TM Receptor family member (str-149) [Caenorhabditis elegans] 80 1.49713
CJ730742 whsh1d09 5' - 162bp whsh_all.Contig886            
CJ730743 whsh1d10 5' - 211bp whsh_all.Contig1244            
CJ730744 whsh1d11 5' - 374bp whsh_all.Contig1132       ferritin 1 [Hordeum vulgare] 270 1.41221e-22
CJ730745 whsh1d12 5' - 134bp       solute/sodium symporter (SSS) family protein [Escherichia coli SMS-3-5] 214 4.31291e-16
CJ730746 whsh1d13 5' - 417bp whsh_all.Contig1247       light-harvesting chlorophyll a/b protein precursor 444 9.15302e-43
CJ730747 whsh1d16 5' - 144bp            
CJ730748 whsh1d20 5' - 597bp whsh_all.Contig1272       putative oxygen-evolving complex precursor [Triticum aestivum] 528 3.04052e-52
CJ730749 whsh1e03 5' - 104bp            
CJ730750 whsh1e05 5' - 342bp whsh_all.Contig1132       ferritin 1 [Hordeum vulgare] 215 3.27018e-16
CJ730751 whsh1e06 5' - 541bp whsh_all.Contig894       Os07g0470800 [Oryza sativa (japonica cultivar-group)] 218 1.82441e-23
CJ730752 whsh1e07 5' - 242bp       GD22210 [Drosophila simulans] 73 9.68187
CJ730753 whsh1e08 5' - 560bp whsh_all.Contig1226       ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum] 428 9.5937e-60
CJ730754 whsh1e10 5' - 401bp whsh_all.Contig885       hypothetical protein OsI_013507 [Oryza sativa (indica cultivar-group)] 426 1.14667e-40
CJ730755 whsh1e11 5' - 218bp whsh_all.Contig1247       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 107 0.00109243
CJ730756 whsh1e13 5' - 341bp whsh_all.Contig1251       RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic; AltName: Full=LHCI type I CAB-1B-20; AltName: Full=Light-harvesting complex I 20 kDa protein; Flags: Precursor 151 8.65846e-09
CJ730757 whsh1e16 5' - 655bp whsh_all.Contig862       Translationally-controlled tumor protein homolog (TCTP) 795 4.15584e-83
CJ730758 whsh1e19 5' - 598bp whsh_all.Contig1177       Phosphoribulokinase, chloroplast precursor (PRKase) (PRK) (Phosphopentokinase) 957 5.38759e-102
CJ730759 whsh1e22 5' - 621bp whsh_all.Contig911       triticain alpha [Triticum aestivum] 599 1.95373e-60
CJ730760 whsh1f03 5' - 572bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hordeum chilense] 899 2.58889e-95
CJ730761 whsh1f04 5' - 316bp whsh_all.Contig610       isoflavone reductase [Hordeum vulgare] 275 3.73042e-23
CJ730762 whsh1f07 5' - 235bp whsh_all.Contig506            
CJ730763 whsh1f08 5' - 245bp whsh_all.Contig901            
CJ730764 whsh1f09 5' - 576bp whsh_all.Contig405       hypothetical protein OsJ_005554 [Oryza sativa (japonica cultivar-group)] 449 4.04733e-43
CJ730765 whsh1f10 5' - 106bp            
CJ730766 whsh1f11 5' - 277bp whsh_all.Contig1129            
CJ730767 whsh1f12 5' - 365bp whsh_all.Contig1228       Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) 247 6.41685e-20
CJ730768 whsh1f13 5' - 238bp whsh_all.Contig1247       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 144 5.70135e-08
CJ730769 whsh1f16 5' - 397bp whsh_all.Contig1030       non-specific lipid transfer protein 1 precursor [Triticum aestivum] 301 3.49285e-26
CJ730770 whsh1f18 5' - 170bp whsh_all.Contig1273            
CJ730771 whsh1f19 5' - 367bp whsh_all.Contig78       phosphopyruvate hydratase [Shigella flexneri 5 str. 8401] 511 1.56593e-50
CJ730772 whsh1f23 5' - 417bp whsh_all.Contig1266       chloroplast chlorophyll a-b binding protein 8 [Oryza sativa (indica cultivar-group)] 231 4.59325e-18
CJ730773 whsh1f24 5' - 151bp whsh_all.Contig1181            
CJ730774 whsh1g10 5' - 528bp whsh_all.Contig966       Metallothionein-like protein 1 (MT-1) 172 4.22442e-11
CJ730775 whsh1g14 5' - 243bp whsh_all.Contig6       unknown [Zea mays] 247 6.4492e-20
CJ730776 whsh1g15 5' - 238bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Eremopyrum orientale] 303 2.07686e-26
CJ730777 whsh1g19 5' - 584bp       Lateral flagellar hook associated protein 3 (FlgL-like) [Escherichia coli] 492 4.3072e-48
CJ730778 whsh1g21 5' - 262bp whsh_all.Contig1236       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 166 1.61353e-10
CJ730779 whsh1g22 5' - 103bp            
CJ730780 whsh1g24 5' - 180bp whsh_all.Contig174       PREDICTED: similar to glucose dehydrogenase, partial [Acyrthosiphon pisum] 73 9.59563
CJ730781 whsh1h01 5' - 267bp whsh_all.Contig1089       Y54F10AM.11 [Caenorhabditis elegans] 85 0.396969
CJ730782 whsh1h02 5' - 320bp whsh_all.Contig1192       Ferredoxin, chloroplast precursor 168 9.49556e-11
CJ730783 whsh1h03 5' - 201bp whsh_all.Contig319            
CJ730784 whsh1h09 5' - 121bp            
CJ730785 whsh1h10 5' - 212bp whsh_all.Contig1284       PREDICTED: hypothetical protein, partial [Homo sapiens] 80 1.48626
CJ730786 whsh1h12 5' - 344bp whsh_all.Contig1061       unknown [Zea mays] 193 1.1631e-13
CJ730787 whsh1h14 5' - 364bp whsh_all.Contig487       unknown [Zea mays] 193 1.17214e-13
CJ730788 whsh1h16 5' - 108bp            
CJ730789 whsh1h17 5' - 234bp whsh_all.Contig1278       phytoene dehydrogenase-related protein [Rhodobacter sphaeroides ATCC 17025] 73 9.74761
CJ730790 whsh1h20 5' - 389bp whsh_all.Contig1151       Ferredoxin, chloroplast precursor 177 8.41943e-12
CJ730791 whsh1h21 5' - 103bp            
CJ730792 whsh1h24 5' - 443bp whsh_all.Contig1253       Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor (CAB) 439 3.47384e-42
CJ730793 whsh1i02 5' - 250bp whsh_all.Contig1189            
CJ730794 whsh1i06 5' - 706bp whsh_all.Contig493       putative spindle disassembly related protein CDC48 [Nicotiana tabacum] 747 1.77914e-77
CJ730795 whsh1i09 5' - 241bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Eremopyrum orientale] 299 6.04273e-26
CJ730796 whsh1i11 5' - 159bp       unnamed protein product [Vitis vinifera] 77 3.3716
CJ730797 whsh1i12 5' - 592bp whsh_all.Contig1277       Carbonic anhydrase, chloroplast precursor (Carbonate dehydratase) 478 1.82823e-46
CJ730798 whsh1i13 5' - 192bp whsh_all.Contig1180       RNA polymerase factor sigma-70 [Thermoanaerobacter tengcongensis MB4] 82 0.891421
CJ730799 whsh1i14 5' - 174bp whsh_all.Contig557            
CJ730800 whsh1i19 5' - 590bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Crithopsis delileana] 1045 3.27056e-112
CJ730801 whsh1i21 5' - 130bp whsh_all.Contig631            
CJ730802 whsh1i24 5' - 141bp whsh_all.Contig1275            
CJ730803 whsh1j01 5' - 586bp whsh_all.Contig719       side tail fiber protein [Escherichia coli E22] 310 5.55565e-27
CJ730804 whsh1j03 5' - 130bp            
CJ730805 whsh1j04 5' - 498bp whsh_all.Contig1259       LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp. vulgare] 538 1.23828e-53
CJ730806 whsh1j06 5' - 339bp whsh_all.Contig35       hypothetical protein OsJ_003014 [Oryza sativa (japonica cultivar-group)] 80 1.48594
CJ730807 whsh1j07 5' - 218bp whsh_all.Contig1232       GTP cyclohydrolase II, putative [Aspergillus clavatus NRRL 1] 73 9.57017
CJ730808 whsh1j08 5' - 122bp            
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