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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download  -------------------------- How to Order Resources MTA Sample

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 9415
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whkv_10015_a01f 2012 5' Shoot grown with continuous light after cold treatment 398bp Contig6263       predictedprotein[Hordeumvulgaresubsp.vulgare] 244 9.26454e-63
whkv_11015_a01f 2012 5' Shoot grown with continuous light after cold treatment 703bp Contig7395       coldacclimationproteinWCOR410c[Triticumaestivum] 420 2.19956e-115
whkv_13015_a01f 2012 5' Shoot grown with continuous light after cold treatment 660bp       PREDICTED:uncharacterizedproteinLOC100843647[Brachypodiumdistachyon] 97 3.71149e-18
whkv_14015_a01f 2012 5' Shoot grown with continuous light after cold treatment 441bp Contig1500       predictedprotein[Hordeumvulgaresubsp.vulgare] 280 1.52545e-73
whkv_15015_a01f 2012 5' Shoot grown with continuous light after cold treatment 701bp       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Hordeumchilense] 465 7.78695e-129
whkv_16015_a01f 2012 5' Shoot grown with continuous light after cold treatment 680bp       hexaubiquitinprotein[Arabidopsislyratasubsp.lyrata] 269 4.455e-70
whkv_20015_a01f 2012 5' Shoot grown with continuous light after cold treatment 549bp Contig4170       S-adenosyl-L-homocysteinehydrolase[Hordeumvulgaresubsp.vulgare] 204 1.30173e-50
whkv_2015_a01f 2012 5' Shoot grown with continuous light after cold treatment 606bp       PREDICTED:uncharacterizedproteinLOC100810244[Glycinemax] 120 2.54981e-25
whkv_5015_a01f 2012 5' Shoot grown with continuous light after cold treatment 695bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 308 1.19307e-81
whkv_9015_a01f 2012 5' Shoot grown with continuous light after cold treatment 326bp Contig2743       RecName:Full=Phosphoribulokinase,chloroplastic;Short=PRK;Short=PRKase;AltName:Full=Phosphopentokinase;Flags:Precursor 226 1.98384e-57
whkv_10015_a01r 2012 3' Shoot grown with continuous light after cold treatment 578bp Contig21192       PREDICTED:abscisicstress-ripeningprotein3-like[Brachypodiumdistachyon] 200 2.20751e-49
whkv_1015_a01r 2012 3' Shoot grown with continuous light after cold treatment 426bp Contig3314       RecName:Full=Cytochromeb6-fcomplexiron-sulfursubunit,chloroplastic;AltName:Full=Plastohydroquinone:plastocyaninoxidoreductaseiron-sulfurprotein;AltName:Full=Rieskeiron-sulfurprotein;Short=ISP;Short=RISP;Flags:Precursor 234 7.27407e-60
whkv_11015_a01r 2012 3' Shoot grown with continuous light after cold treatment 662bp Contig7395       coldacclimationproteinWCOR410c[Triticumaestivum] 428 5.44543e-118
whkv_13015_a01r 2012 3' Shoot grown with continuous light after cold treatment 261bp       HypotheticalproteinCBG16448[Caenorhabditisbriggsae] 35 8.53707
whkv_14015_a01r 2012 3' Shoot grown with continuous light after cold treatment 368bp Contig13730       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 1.1436e-49
whkv_15015_a01r 2012 3' Shoot grown with continuous light after cold treatment 752bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Crithopsisdelileana] 519 3.08836e-145
whkv_16015_a01r 2012 3' Shoot grown with continuous light after cold treatment 641bp Contig2804       hexaubiquitinprotein[Arabidopsislyratasubsp.lyrata] 280 2.19791e-73
whkv_20015_a01r 2012 3' Shoot grown with continuous light after cold treatment 544bp Contig4170       S-adenosyl-L-homocysteinehydrolase[Hordeumvulgaresubsp.vulgare] 237 1.78438e-60
whkv_2015_a01r 2012 3' Shoot grown with continuous light after cold treatment 583bp       RRNAintron-encodedhomingendonuclease[Medicagotruncatula] 129 4.86656e-28
whkv_3015_a01r 2012 3' Shoot grown with continuous light after cold treatment 213bp Contig11259       unnamedproteinproduct[TrypanosomacongolenseIL3000] 36 4.88294
whkv_4015_a01r 2012 3' Shoot grown with continuous light after cold treatment 481bp       ascorbateperoxidase[Triticumaestivum] 117 1.28133e-24
whkv_6015_a01r 2012 3' Shoot grown with continuous light after cold treatment 400bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 57 1.22979e-06
whkv_7015_a01r 2012 3' Shoot grown with continuous light after cold treatment 392bp Contig18561       Os02g0178400[OryzasativaJaponicaGroup] 140 2.40018e-31
whkv_9015_a01r 2012 3' Shoot grown with continuous light after cold treatment 749bp Contig2743       RecName:Full=Phosphoribulokinase,chloroplastic;Short=PRK;Short=PRKase;AltName:Full=Phosphopentokinase;Flags:Precursor 331 2.01658e-88
whkv_1015_a02f 2012 5' Shoot grown with continuous light after cold treatment 483bp Contig6630       chlorophyllideaoxygenase[Hordeumvulgare] 103 4.77024e-21
whkv_14015_a02f 2012 5' Shoot grown with continuous light after cold treatment 193bp Contig20696       profilinR2-2[Triticumturgidumsubsp.durumxSecalecereale] 76 3.33624e-12
whkv_15015_a02f 2012 5' Shoot grown with continuous light after cold treatment 251bp       ribulosebiphosphatecarboxylase,partial[Setariaparviflora] 167 1.07281e-39
whkv_17015_a02f 2012 5' Shoot grown with continuous light after cold treatment 655bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 442 3.51551e-122
whkv_18015_a02f 2012 5' Shoot grown with continuous light after cold treatment 690bp Contig2875       chlorophylla/b-bindingproteinWCABprecursor[Triticumaestivum] 460 1.408e-127
whkv_19015_a02f 2012 5' Shoot grown with continuous light after cold treatment 757bp Contig11714       predictedprotein[Hordeumvulgaresubsp.vulgare] 146 9.44661e-33
whkv_20015_a02f 2012 5' Shoot grown with continuous light after cold treatment 782bp            
whkv_4015_a02f 2012 5' Shoot grown with continuous light after cold treatment 735bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.53561e-98
whkv_5015_a02f 2012 5' Shoot grown with continuous light after cold treatment 672bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 330 2.05578e-88
whkv_6015_a02f 2012 5' Shoot grown with continuous light after cold treatment 708bp Contig7144       predictedprotein[Hordeumvulgaresubsp.vulgare] 417 1.91963e-114
whkv_7015_a02f 2012 5' Shoot grown with continuous light after cold treatment 691bp Contig7521       Unknown(proteinforMGC:35458)[Homosapiens] 452 3.87557e-125
whkv_1015_a02r 2012 3' Shoot grown with continuous light after cold treatment 533bp Contig6630       chlorophyllideaoxygenase[Hordeumvulgare] 136 2.35924e-30
whkv_12015_a02r 2012 3' Shoot grown with continuous light after cold treatment 324bp Contig13713       putativeTdLFC69protein[Triticumdurum] 111 1.21932e-22
whkv_14015_a02r 2012 3' Shoot grown with continuous light after cold treatment 755bp Contig20696       profilin[Triticumaestivum] 278 1.57892e-72
whkv_15015_a02r 2012 3' Shoot grown with continuous light after cold treatment 71bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Boragoofficinalis] 54 1.24604e-05
whkv_17015_a02r 2012 3' Shoot grown with continuous light after cold treatment 730bp Contig14788       predictedprotein[Hordeumvulgaresubsp.vulgare] 354 2.10526e-95
whkv_18015_a02r 2012 3' Shoot grown with continuous light after cold treatment 736bp Contig2875       chlorophylla/b-bindingproteinWCABprecursor[Triticumaestivum] 448 1.09146e-123
whkv_19015_a02r 2012 3' Shoot grown with continuous light after cold treatment 663bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 146 7.05011e-33
whkv_20015_a02r 2012 3' Shoot grown with continuous light after cold treatment 695bp       PREDICTED:uncharacterizedproteinAt5g03900,chloroplastic-likeisoform1[Brachypodiumdistachyon] 177 2.432e-42
whkv_4015_a02r 2012 3' Shoot grown with continuous light after cold treatment 654bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 9.99951e-85
whkv_5015_a02r 2012 3' Shoot grown with continuous light after cold treatment 616bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 3.2518e-92
whkv_6015_a02r 2012 3' Shoot grown with continuous light after cold treatment 691bp Contig6824       predictedprotein[Hordeumvulgaresubsp.vulgare] 347 2.29325e-93
whkv_7015_a02r 2012 3' Shoot grown with continuous light after cold treatment 739bp Contig7521       RecName:Full=Ribulosebisphosphatecarboxylase/oxygenaseactivaseA,chloroplastic;Short=RAA;Short=RuBisCOactivaseA;Flags:Precursor 343 2.62139e-109
whkv_9015_a02r 2012 3' Shoot grown with continuous light after cold treatment 35bp            
whkv_1016_a03f 2012 5' Shoot grown with continuous light after cold treatment 318bp Contig12167       predictedprotein[Hordeumvulgaresubsp.vulgare] 94 1.55397e-17
whkv_16016_a03f 2012 5' Shoot grown with continuous light after cold treatment 765bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 482 4.31079e-134
whkv_2016_a03f 2012 5' Shoot grown with continuous light after cold treatment 519bp Contig16363       PREDICTED:uncharacterizedproteinLOC100827890[Brachypodiumdistachyon] 317 1.16295e-84
whkv_3016_a03f 2012 5' Shoot grown with continuous light after cold treatment 591bp Contig12684       predictedprotein[Hordeumvulgaresubsp.vulgare] 396 1.71598e-108
whkv_4016_a03f 2012 5' Shoot grown with continuous light after cold treatment 678bp Contig6790       predictedprotein[Hordeumvulgaresubsp.vulgare] 431 1.14332e-118
whkv_7016_a03f 2012 5' Shoot grown with continuous light after cold treatment 333bp Contig25765            
whkv_9016_a03f 2012 5' Shoot grown with continuous light after cold treatment 465bp Contig8323       PREDICTED:abscisicstress-ripeningprotein3-like[Brachypodiumdistachyon] 207 9.5845e-52
whkv_1016_a03r 2012 3' Shoot grown with continuous light after cold treatment 401bp Contig12167       predictedprotein[Hordeumvulgaresubsp.vulgare] 111 9.33448e-23
whkv_12016_a03r 2012 3' Shoot grown with continuous light after cold treatment 547bp Contig37015       predictedprotein[Hordeumvulgaresubsp.vulgare] 262 4.02781e-68
whkv_15016_a03r 2012 3' Shoot grown with continuous light after cold treatment 159bp       PREDICTED:F-boxonlyprotein41[Loxodontaafricana] 36 3.8096
whkv_16016_a03r 2012 3' Shoot grown with continuous light after cold treatment 735bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 368 1.42215e-99
whkv_20016_a03r 2012 3' Shoot grown with continuous light after cold treatment 214bp Contig6743            
whkv_2016_a03r 2012 3' Shoot grown with continuous light after cold treatment 689bp Contig16363       Os02g0726400[OryzasativaJaponicaGroup] 235 1.25656e-59
whkv_3016_a03r 2012 3' Shoot grown with continuous light after cold treatment 671bp Contig28504       predictedprotein[Hordeumvulgaresubsp.vulgare] 374 1.24143e-101
whkv_4016_a03r 2012 3' Shoot grown with continuous light after cold treatment 674bp Contig6790       predictedprotein[Hordeumvulgaresubsp.vulgare] 372 6.23197e-101
whkv_7016_a03r 2012 3' Shoot grown with continuous light after cold treatment 273bp Contig25765       predictedprotein[Hordeumvulgaresubsp.vulgare] 193 1.41105e-47
whkv_9016_a03r 2012 3' Shoot grown with continuous light after cold treatment 622bp Contig8323       PREDICTED:abscisicstress-ripeningprotein3-like[Brachypodiumdistachyon] 207 1.70264e-51
whkv_10016_a04f 2012 5' Shoot grown with continuous light after cold treatment 137bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 82 5.95855e-14
whkv_1016_a04f 2012 5' Shoot grown with continuous light after cold treatment 203bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 56 2.70881e-06
whkv_11016_a04f 2012 5' Shoot grown with continuous light after cold treatment 670bp       Os06g0582600[OryzasativaJaponicaGroup] 240 2.79787e-61
whkv_12016_a04f 2012 5' Shoot grown with continuous light after cold treatment 742bp Contig11419       PREDICTED:pollen-specificproteinSF3-like[Brachypodiumdistachyon] 385 1.15575e-104
whkv_13016_a04f 2012 5' Shoot grown with continuous light after cold treatment 646bp Contig35094       RecName:Full=RibulosebisphosphatecarboxylasesmallchainPWS4.3,chloroplastic;Short=RuBisCOsmallsubunitPWS4.3;Flags:Precursor 357 1.89512e-96
whkv_16016_a04f 2012 5' Shoot grown with continuous light after cold treatment 471bp Contig7591       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 329 2.17444e-88
whkv_18016_a04f 2012 5' Shoot grown with continuous light after cold treatment 289bp Contig4366       predictedprotein[Hordeumvulgaresubsp.vulgare] 180 1.65051e-43
whkv_19016_a04f 2012 5' Shoot grown with continuous light after cold treatment 695bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whkv_20016_a04f 2012 5' Shoot grown with continuous light after cold treatment 600bp Contig614       Chainv,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 218 8.58873e-55
whkv_2016_a04f 2012 5' Shoot grown with continuous light after cold treatment 652bp Contig14088       PREDICTED:6-phosphogluconatedehydrogenase,decarboxylating-likeisoform1[Brachypodiumdistachyon] 417 2.04058e-114
whkv_3016_a04f 2012 5' Shoot grown with continuous light after cold treatment 667bp Contig9007       predictedprotein[Hordeumvulgaresubsp.vulgare] 430 1.46673e-118
whkv_4016_a04f 2012 5' Shoot grown with continuous light after cold treatment 733bp Contig9953       vacuolarproton-ATPasesubunitA[Triticumaestivum] 437 1.46149e-120
whkv_8016_a04f 2012 5' Shoot grown with continuous light after cold treatment 779bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.94195e-98
whkv_9016_a04f 2012 5' Shoot grown with continuous light after cold treatment 160bp       hypotheticalprotein[OryzasativaJaponicaGroup] 51 0.000114799
whkv_1016_a04r 2012 3' Shoot grown with continuous light after cold treatment 676bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 199 7.31237e-49
whkv_11016_a04r 2012 3' Shoot grown with continuous light after cold treatment 669bp       Os06g0582600[OryzasativaJaponicaGroup] 199 5.49953e-49
whkv_12016_a04r 2012 3' Shoot grown with continuous light after cold treatment 717bp Contig11419       PREDICTED:pollen-specificproteinSF3-like[Brachypodiumdistachyon] 368 7.94782e-100
whkv_13016_a04r 2012 3' Shoot grown with continuous light after cold treatment 720bp Contig35094       RecName:Full=RibulosebisphosphatecarboxylasesmallchainPWS4.3,chloroplastic;Short=RuBisCOsmallsubunitPWS4.3;Flags:Precursor 351 1.31309e-94
whkv_14016_a04r 2012 3' Shoot grown with continuous light after cold treatment 514bp       PREDICTED:60SribosomalproteinL36a-likeisoform1[Brachypodiumdistachyon] 224 7.70429e-57
whkv_15016_a04r 2012 3' Shoot grown with continuous light after cold treatment 225bp       hypotheticalproteinBRAFLDRAFT_124384[Branchiostomafloridae] 36 3.84643
whkv_16016_a04r 2012 3' Shoot grown with continuous light after cold treatment 642bp Contig7591       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 363 3.36737e-98
whkv_18016_a04r 2012 3' Shoot grown with continuous light after cold treatment 60bp Contig4366       ATP-dependentClpproteaseregulatorysubunit[CrocosphaerawatsoniiWH0003] 44 0.0139119
whkv_19016_a04r 2012 3' Shoot grown with continuous light after cold treatment 700bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.46291e-92
whkv_20016_a04r 2012 3' Shoot grown with continuous light after cold treatment 563bp Contig614       Chainv,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 218 7.33698e-55
whkv_2016_a04r 2012 3' Shoot grown with continuous light after cold treatment 635bp Contig14088       PREDICTED:6-phosphogluconatedehydrogenase,decarboxylating-likeisoform1[Brachypodiumdistachyon] 299 4.45506e-79
whkv_3016_a04r 2012 3' Shoot grown with continuous light after cold treatment 644bp Contig16071       vacuolarproton-inorganicpyrophosphatase[Triticumaestivum] 222 5.50853e-56
whkv_5016_a04r 2012 3' Shoot grown with continuous light after cold treatment 462bp Contig11558       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 1.95451e-49
whkv_8016_a04r 2012 3' Shoot grown with continuous light after cold treatment 752bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 357 2.65109e-96
whkv_9016_a04r 2012 3' Shoot grown with continuous light after cold treatment 629bp       hypotheticalprotein[OryzasativaJaponicaGroup] 121 1.64872e-25
whkv_13031_a05f 2012 5' Shoot grown with continuous light after cold treatment 663bp Contig2266       predictedprotein[Hordeumvulgaresubsp.vulgare] 323 2.46712e-86
whkv_14031_a05f 2012 5' Shoot grown with continuous light after cold treatment 681bp Contig8529       predictedprotein[Hordeumvulgaresubsp.vulgare] 410 2.78891e-112
whkv_15031_a05f 2012 5' Shoot grown with continuous light after cold treatment 502bp Contig4599       predictedprotein[Hordeumvulgaresubsp.vulgare] 336 2.27829e-90
whkv_16031_a05f 2012 5' Shoot grown with continuous light after cold treatment 697bp Contig2805       MYB-relatedprotein[Aegilopsspeltoides] 440 2.6549e-121
whkv_20031_a05f 2012 5' Shoot grown with continuous light after cold treatment 698bp Contig23556       hypotheticalproteinOsI_20483[OryzasativaIndicaGroup] 242 6.22072e-62
whkv_2031_a05f 2012 5' Shoot grown with continuous light after cold treatment 383bp Contig7644       RecName:Full=RibulosebisphosphatecarboxylasesmallchainPW9,chloroplastic;Short=RuBisCOsmallsubunitPW9;Flags:Precursor 181 9.5089e-44
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