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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 12300
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
BJ243195 whf10a04 2002 5' Spike at flowering date 538bp Contig13307 Contig13307 Q9SMX3 Q9SMX3 Q9SMX3 Q9SMX3 Q9SMX3 GO:0005739 GO:0005741 GO:0015288 GO:0016021 GO:0019867 mitochondrion ,  mitochondrial outer membrane ,  porin activity ,  integral to membrane ,  outer membrane Os03g0202200 [Oryza sativa (japonica cultivar-group)] 667 1.71276e-68
BJ243196 whf10a06 2002 5' Spike at flowering date 644bp Contig7070 Contig7070 P47114 GO:0016021 integral to membrane putative periplasmic protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] 78 5.49022
BJ243197 whf10a09 2002 5' Spike at flowering date 614bp Contig15861 Contig15861 Q9LSU0 Q9LSU0 Q9LSU0 GO:0005829 GO:0008233 GO:0016787 cytosol ,  peptidase activity ,  hydrolase activity unknown [Hordeum vulgare] 840 2.15792e-88
BJ243198 whf10a11 2002 5' Spike at flowering date 529bp Contig16107 Contig16107 Q9ZNS1 GO:0003735 structural constituent of ribosome ribosomal protein S7 [Triticum aestivum] 783 5.97404e-82
BJ243199 whf10a14 2002 5' Spike at flowering date 662bp Contig13387 Contig13387 O24650 O24650 O24650 GO:0003779 GO:0005856 GO:0016068 actin binding ,  cytoskeleton ,  immediate hypersensitivity response RecName: Full=Profilin-2/4; AltName: Full=Pollen allergen Phl p 12; AltName: Full=Allergen Phl p 11; AltName: Allergen=Phl p 12 586 7.2987e-59
BJ243200 whf10a15 2002 5' Spike at flowering date 614bp Contig16005 Contig16005       reversibly glycosylated polypeptide [Triticum aestivum] 1039 1.81412e-111
BJ243201 whf10a16 2002 5' Spike at flowering date 551bp Contig16128 Contig16128 P10690 P10690 P10690 P10690 P10690 GO:0009507 GO:0009523 GO:0009579 GO:0015979 GO:0016020 chloroplast ,  photosystem II ,  thylakoid ,  photosynthesis ,  membrane PS II 10 kDa protein [Phyllostachys pubescens] 471 1.00246e-45
BJ243202 whf10a17 2002 5' Spike at flowering date 536bp Contig14807 Contig14807 O42993 O42993 O42993 GO:0003755 GO:0006457 GO:0016853 peptidyl-prolyl cis-trans isomerase activity ,  protein folding ,  isomerase activity immunophilin [Zea mays] 550 6.31861e-55
BJ243203 whf10a18 2002 5' Spike at flowering date 642bp Contig8705 Contig8705       Os07g0662600 [Oryza sativa (japonica cultivar-group)] 715 7.41444e-74
BJ243204 whf10a19 2002 5' Spike at flowering date 339bp Contig12300 Contig12300 P81559 P81559 P81559 P81559 P81559 GO:0003677 GO:0004872 GO:0005496 GO:0005634 GO:0006355 DNA binding ,  receptor activity ,  steroid binding ,  nucleus ,  regulation of transcription, DNA-dependent hypothetical protein BRAFLDRAFT_119850 [Branchiostoma floridae] 75 5.62528
BJ243205 whf10a21 2002 5' Spike at flowering date 385bp Contig13392 Contig13392 Q01484 GO:0005856 cytoskeleton unnamed protein product [Vitis vinifera] 80 1.49557
BJ243206 whf10b01 2002 5' Spike at flowering date 561bp Contig15564 Contig15564 P49357 P49357 P49357 GO:0005739 GO:0006730 GO:0016740 mitochondrion ,  one-carbon compound metabolism ,  transferase activity serine hydroxymethyltransferase [Triticum monococcum] 597 2.53236e-60
BJ243207 whf10b02 2002 5' Spike at flowering date 599bp Contig15030 Contig15030       hypothetical protein OsJ_016635 [Oryza sativa (japonica cultivar-group)] 457 5.19838e-44
BJ243208 whf10b06 2002 5' Spike at flowering date 645bp Contig15292 Contig15292 P27788 P27788 GO:0006118 GO:0009507 electron transport ,  chloroplast Os03g0835900 [Oryza sativa (japonica cultivar-group)] 504 2.1982e-49
BJ243209 whf10b07 2002 5' Spike at flowering date 343bp Contig1143 Contig1143 P52890 P52890 P52890 P52890 GO:0003677 GO:0005634 GO:0006355 GO:0007126 DNA binding ,  nucleus ,  regulation of transcription, DNA-dependent ,  meiosis hypothetical protein OsJ_012160 [Oryza sativa (japonica cultivar-group)] 301 3.4858e-26
BJ243210 whf10b08 2002 5' Spike at flowering date 574bp Contig1958 Contig1958       Os01g0314800 [Oryza sativa (japonica cultivar-group)] 217 3.1796e-16
BJ243211 whf10b09 2002 5' Spike at flowering date 524bp Contig14914 Contig14914 O23290 GO:0003735 structural constituent of ribosome unknown [Zea mays] 422 4.16137e-40
BJ243212 whf10b11 2002 5' Spike at flowering date 593bp Contig13571 Contig13571 Q02060 Q02060 Q02060 Q02060 Q02060 GO:0009507 GO:0009523 GO:0009579 GO:0015979 GO:0016021 chloroplast ,  photosystem II ,  thylakoid ,  photosynthesis ,  integral to membrane unknown [Zea mays] 370 6.18993e-34
BJ243213 whf10b12 2002 5' Spike at flowering date 661bp Contig10501 Contig10501 P52409 P52409 P52409 GO:0005975 GO:0016787 GO:0016798 carbohydrate metabolism ,  hydrolase activity ,  hydrolase activity, acting on glycosyl bonds beta-1,3-glucanase [Triticum aestivum] 818 9.14762e-86
BJ243214 whf10b16 2002 5' Spike at flowering date 485bp Contig16270 Contig16270 Q40004 Q40004 Q40004 Q40004 Q40004 Q40004 Q40004 GO:0004497 GO:0009507 GO:0009853 GO:0015977 GO:0015979 GO:0016491 GO:0016829 monooxygenase activity ,  chloroplast ,  photorespiration ,  carbon utilization by fixation of carbon dioxide ,  photosynthesis ,  oxidoreductase activity ,  lyase activity hypothetical protein [Secale cereale] 850 7.64378e-90
BJ243215 whf10b20 2002 5' Spike at flowering date 622bp Contig14071 Contig14071 O24650 O24650 O24650 GO:0003779 GO:0005856 GO:0016068 actin binding ,  cytoskeleton ,  immediate hypersensitivity response RecName: Full=Profilin-2/4; AltName: Full=Pollen allergen Phl p 12; AltName: Full=Allergen Phl p 11; AltName: Allergen=Phl p 12 586 6.28492e-59
BJ243216 whf10b21 2002 5' Spike at flowering date 409bp Contig14340 Contig14340 P50398 GO:0005096 GTPase activator activity unknown [Zea mays] 699 2.50026e-72
BJ243217 whf10b24 2002 5' Spike at flowering date 665bp Contig7376 Contig7376 O75912 O75912 O75912 GO:0005634 GO:0016301 GO:0016740 nucleus ,  kinase activity ,  transferase activity hypothetical protein Bm1_17870 [Brugia malayi] 231 1.0613e-17
BJ243218 whf10c01 2002 5' Spike at flowering date 530bp Contig7382 Contig7382 Q12972 Q12972 Q12972 Q12972 Q12972 Q12972 Q12972 GO:0000287 GO:0003723 GO:0004518 GO:0004519 GO:0004864 GO:0006371 GO:0016787 magnesium ion binding ,  RNA binding ,  nuclease activity ,  endonuclease activity ,  protein phosphatase inhibitor activity ,  mRNA splicing ,  hydrolase activity Os05g0546600 [Oryza sativa (japonica cultivar-group)] 325 7.66308e-29
BJ243219 whf10c03 2002 5' Spike at flowering date 582bp Contig12894 Contig12894 Q9LJ98 GO:0003754 chaperone activity unknown [Zea mays] 645 7.69662e-66
BJ243220 whf10c04 2002 5' Spike at flowering date 555bp Contig14760 Contig14760 P33296 P33296 P33296 GO:0005783 GO:0016021 GO:0016874 endoplasmic reticulum ,  integral to membrane ,  ligase activity unknown [Zea mays] 878 6.52038e-93
BJ243221 whf10c05 2002 5' Spike at flowering date 601bp Q14669 Q14669 GO:0005829 GO:0016874 cytosol ,  ligase activity hypothetical protein OsJ_004875 [Oryza sativa (japonica cultivar-group)] 733 5.22292e-76
BJ243222 whf10c08 2002 5' Spike at flowering date 527bp Contig14267 Contig14267 P80595 P80595 GO:0016021 GO:0016787 integral to membrane ,  hydrolase activity Os12g0123500 [Oryza sativa (japonica cultivar-group)] 407 2.33002e-38
BJ243223 whf10c13 2002 5' Spike at flowering date 606bp Contig1149 Contig1149 O13864 O13864 O13864 O13864 O13864 GO:0005634 GO:0006810 GO:0006886 GO:0008565 GO:0015031 nucleus ,  transport ,  intracellular protein transport ,  protein transporter activity ,  protein transport hypothetical protein OsI_018901 [Oryza sativa (indica cultivar-group)] 760 3.91809e-79
BJ243224 whf10c14 2002 5' Spike at flowering date 599bp Contig1673 Contig1673 Q92HM7 Q92HM7 GO:0008299 GO:0016853 isoprenoid biosynthesis ,  isomerase activity unknown [Zea mays] 698 5.89279e-72
BJ243225 whf10c15 2002 5' Spike at flowering date 628bp Contig15835 Contig15835 Q50597 GO:0016021 integral to membrane PREDICTED: similar to Zinc finger protein 585B [Monodelphis domestica] 68 8.26958
BJ243226 whf10c17 2002 5' Spike at flowering date 601bp Contig16263 Contig16263 Q9UBG7 Q9UBG7 Q9UBG7 GO:0003677 GO:0005634 GO:0006355 DNA binding ,  nucleus ,  regulation of transcription, DNA-dependent unnamed protein product [Vitis vinifera] 328 4.79013e-29
BJ243227 whf10c20 2002 5' Spike at flowering date 805bp Contig16291 Contig16291 P36021 P36021 P36021 GO:0006810 GO:0015293 GO:0016021 transport ,  symporter activity ,  integral to membrane unknown [Zea mays] 685 4.80688e-105
BJ243228 whf10c21 2002 5' Spike at flowering date 250bp Q9UPU3 GO:0016021 integral to membrane Putative endonuclease, type II restriction enzyme [Cupriavidus taiwanensis] 81 1.13592
BJ243229 whf10c22 2002 5' Spike at flowering date 534bp Contig15066 Contig15066 P14948 GO:0016068 immediate hypersensitivity response pollen allergen-like protein [Triticum aestivum] 478 1.38378e-46
BJ243230 whf10c23 2002 5' Spike at flowering date 436bp Contig15588 Contig15588 P04907 GO:0016740 transferase activity glutathione transferase F5 [Triticum aestivum] 564 1.12181e-56
BJ243231 whf10c24 2002 5' Spike at flowering date 694bp P41152 P41152 P41152 P41152 GO:0003677 GO:0003773 GO:0005634 GO:0006355 DNA binding ,  heat shock protein activity ,  nucleus ,  regulation of transcription, DNA-dependent hypothetical protein OsJ_000514 [Oryza sativa (japonica cultivar-group)] 1039 2.38871e-111
BJ243232 whf10d04 2002 5' Spike at flowering date 540bp Contig1152 Contig1152 P03462 GO:0019031 viral envelope hypothetical protein OsJ_015503 [Oryza sativa (japonica cultivar-group)] 88 0.240356
BJ243233 whf10d05 2002 5' Spike at flowering date 684bp Contig7388 Contig7388 Q00004 Q00004 Q00004 Q00004 GO:0003723 GO:0005634 GO:0005786 GO:0030529 RNA binding ,  nucleus ,  signal recognition particle ,  ribonucleoprotein complex unknown [Zea mays] 828 6.72143e-87
BJ243234 whf10d06 2002 5' Spike at flowering date 669bp Contig3163 Contig3163 Q9M0Y8 Q9M0Y8 Q9M0Y8 Q9M0Y8 Q9M0Y8 Q9M0Y8 Q9M0Y8 Q9M0Y8 Q9M0Y8 GO:0000287 GO:0005524 GO:0005783 GO:0005794 GO:0006810 GO:0006886 GO:0008565 GO:0015031 GO:0016787 magnesium ion binding ,  ATP binding ,  endoplasmic reticulum ,  Golgi apparatus ,  transport ,  intracellular protein transport ,  protein transporter activity ,  protein transport ,  hydrolase activity Os05g0519400 [Oryza sativa (japonica cultivar-group)] 606 3.52248e-61
BJ243235 whf10d07 2002 5' Spike at flowering date 612bp Contig15806 Contig15806 P34937 P34937 P34937 P34937 P34937 GO:0006094 GO:0006096 GO:0006098 GO:0006633 GO:0016853 gluconeogenesis ,  glycolysis ,  pentose-phosphate shunt ,  fatty acid biosynthesis ,  isomerase activity triosephosphat-isomerase [Triticum aestivum] 761 8.05784e-83
BJ243236 whf10d09 2002 5' Spike at flowering date 168bp Contig14779 Contig14779 Q9FK43 Q9FK43 GO:0006810 GO:0016021 transport ,  integral to membrane hypothetical protein OsI_016408 [Oryza sativa (indica cultivar-group)] 154 3.93634e-09
BJ243237 whf10d14 2002 5' Spike at flowering date 639bp P03200 GO:0016020 membrane hypothetical protein [Torque teno virus] 105 0.00396661
BJ243238 whf10d15 2002 5' Spike at flowering date 487bp Contig16251 Contig16251 P51818 P51818 P51818 GO:0003754 GO:0003773 GO:0005524 chaperone activity ,  heat shock protein activity ,  ATP binding heat shock protein 90 [Triticum aestivum] 824 7.91008e-87
BJ243239 whf10d18 2002 5' Spike at flowering date 610bp Contig14432 Contig14432 P17073 GO:0003735 structural constituent of ribosome unknown [Zea mays] 849 1.92608e-89
BJ243240 whf10d20 2002 5' Spike at flowering date 576bp Contig14913 Contig14913       CRC-related protein [Triticum aestivum] 740 7.19542e-77
BJ243241 whf10d24 2002 5' Spike at flowering date 638bp Contig1156 Contig1156 Q99KJ8 Q99KJ8 Q99KJ8 Q99KJ8 Q99KJ8 Q99KJ8 GO:0003774 GO:0003774 GO:0005856 GO:0005871 GO:0016020 GO:0030286 motor activity ,  motor activity ,  cytoskeleton ,  kinesin complex ,  membrane ,  dynein complex unknown [Zea mays] 579 4.31498e-58
BJ243242 whf10e01 2002 5' Spike at flowering date 606bp Contig16253 Contig16253 P03915 P03915 P03915 GO:0005739 GO:0007601 GO:0016491 mitochondrion ,  vision ,  oxidoreductase activity Orf122 [Chlorobium tepidum] 223 7.37382e-17
BJ243243 whf10e02 2002 5' Spike at flowering date 651bp Contig1157 Contig1157 P96169 P96169 P96169 P96169 P96169 GO:0005351 GO:0006810 GO:0006814 GO:0015293 GO:0016021 sugar porter activity ,  transport ,  sodium ion transport ,  symporter activity ,  integral to membrane Os01g0678000 [Oryza sativa (japonica cultivar-group)] 642 2.26525e-65
BJ243244 whf10e03 2002 5' Spike at flowering date 526bp Contig12041 Contig12041 P17783 P17783 P17783 GO:0005739 GO:0006099 GO:0016491 mitochondrion ,  tricarboxylic acid cycle ,  oxidoreductase activity Os05g0574400 [Oryza sativa (japonica cultivar-group)] 610 6.73231e-62
BJ243245 whf10e04 2002 5' Spike at flowering date 577bp Contig15507 Contig15507 P54727 P54727 P54727 GO:0005634 GO:0006281 GO:0006974 nucleus ,  DNA repair ,  response to DNA damage stimulus unknown [Zea mays] 316 1.05358e-27
BJ243246 whf10e06 2002 5' Spike at flowering date 564bp Contig1158 Contig1158       PREDICTED: similar to ENSANGP00000021149 [Strongylocentrotus purpuratus] 102 0.00644697
BJ243247 whf10e07 2002 5' Spike at flowering date 478bp Contig1159 Contig1159 O18746 O18746 O18746 O18746 O18746 O18746 GO:0000786 GO:0003677 GO:0005634 GO:0005694 GO:0007076 GO:0007283 nucleosome ,  DNA binding ,  nucleus ,  chromosome ,  mitotic chromosome condensation ,  spermatogenesis Os12g0562300 [Oryza sativa (japonica cultivar-group)] 323 9.91599e-29
BJ243248 whf10e10 2002 5' Spike at flowering date 432bp Contig14758 Contig14758 Q28181 Q28181 Q28181 Q28181 GO:0005216 GO:0006811 GO:0016021 GO:0030552 ion channel activity ,  ion transport ,  integral to membrane ,  3',5'-cAMP binding unnamed protein product [Vitis vinifera] 180 3.80996e-12
BJ243249 whf10e11 2002 5' Spike at flowering date 504bp Contig11245 Contig11245 Q01481 GO:0016021 integral to membrane WIR1 [Triticum aestivum] 95 0.0303592
BJ243250 whf10e12 2002 5' Spike at flowering date 648bp Contig1160 Contig1160 P46934 GO:0016874 ligase activity polyubiquitin-like protein [Brachypodium sylvaticum] 513 2.03497e-50
BJ243251 whf10e13 2002 5' Spike at flowering date 680bp Q9Z2J0 Q9Z2J0 Q9Z2J0 Q9Z2J0 GO:0006810 GO:0006814 GO:0015293 GO:0016021 transport ,  sodium ion transport ,  symporter activity ,  integral to membrane hypothetical protein OsJ_023340 [Oryza sativa (japonica cultivar-group)] 851 1.43205e-89
BJ243252 whf10e14 2002 5' Spike at flowering date 651bp Contig16004 Contig16004 P50883 GO:0003735 structural constituent of ribosome predicted protein [Physcomitrella patens subsp. patens] 791 1.18199e-82
BJ243253 whf10e16 2002 5' Spike at flowering date 571bp Contig16103 Contig16103 P25460 P25460 GO:0003735 GO:0019843 structural constituent of ribosome ,  rRNA binding Os07g0565000 [Oryza sativa (japonica cultivar-group)] 702 1.80538e-72
BJ243254 whf10e18 2002 5' Spike at flowering date 604bp Contig1258 Contig1258 Q9QXN4 GO:0016491 oxidoreductase activity unknown [Zea mays] 865 2.58011e-91
BJ243255 whf10e21 2002 5' Spike at flowering date 501bp Contig10535 Contig10535 Q08655 GO:0005634 nucleus hypothetical protein OsI_015363 [Oryza sativa (indica cultivar-group)] 269 1.97523e-22
BJ243256 whf10e23 2002 5' Spike at flowering date 514bp Contig15322 Contig15322 Q9SLY8 Q9SLY8 GO:0005509 GO:0005783 calcium ion binding ,  endoplasmic reticulum calreticulin-like protein [Triticum aestivum] 714 5.40086e-74
BJ243257 whf10f02 2002 5' Spike at flowering date 632bp Contig16237 Contig16237 P37370 GO:0005856 cytoskeleton probable cytochrome P450 monooxygenase - maize (fragment) 483 5.70455e-47
BJ243258 whf10f03 2002 5' Spike at flowering date 593bp Contig16137 Contig16137 Q9LUQ6 GO:0003735 structural constituent of ribosome ribosomal protein L19 [Triticum aestivum] 668 1.72429e-68
BJ243259 whf10f04 2002 5' Spike at flowering date 571bp O23755 O23755 O23755 GO:0003746 GO:0005525 GO:0006412 translation elongation factor activity ,  GTP binding ,  protein biosynthesis unknown [Zea mays] 707 4.67559e-73
BJ243260 whf10f05 2002 5' Spike at flowering date 603bp Contig1164 Contig1164 Q9KQ06 Q9KQ06 GO:0008168 GO:0016740 methyltransferase activity ,  transferase activity predicted protein [Coprinopsis cinerea okayama7#130] 96 0.0382195
BJ243261 whf10f08 2002 5' Spike at flowering date 604bp Contig7581 Contig7581 Q86UP2 Q86UP2 Q86UP2 GO:0005783 GO:0005871 GO:0016021 endoplasmic reticulum ,  kinesin complex ,  integral to membrane hypothetical protein OsI_005942 [Oryza sativa (indica cultivar-group)] 602 8.20771e-61
BJ243262 whf10f09 2002 5' Spike at flowering date 545bp Contig14389 Contig14389 Q02375 Q02375 GO:0005739 GO:0016491 mitochondrion ,  oxidoreductase activity unknown [Zea mays] 752 2.52198e-78
BJ243263 whf10f10 2002 5' Spike at flowering date 571bp Contig13608 Contig13608 O23755 O23755 O23755 GO:0003746 GO:0005525 GO:0006412 translation elongation factor activity ,  GTP binding ,  protein biosynthesis unknown [Zea mays] 707 4.67559e-73
BJ243264 whf10f14 2002 5' Spike at flowering date 649bp Contig7393 Contig7393       hypothetical protein OsJ_011665 [Oryza sativa (japonica cultivar-group)] 88 0.384683
BJ243265 whf10f15 2002 5' Spike at flowering date 127bp            
BJ243266 whf10f16 2002 5' Spike at flowering date 536bp Contig3892 Contig3892 O60504