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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 5122
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whkv_10015_a01r 2012 3' Shoot grown with continuous light after cold treatment 578bp Contig21192       PREDICTED:abscisicstress-ripeningprotein3-like[Brachypodiumdistachyon] 200 2.20751e-49
whkv_1015_a01r 2012 3' Shoot grown with continuous light after cold treatment 426bp Contig3314       RecName:Full=Cytochromeb6-fcomplexiron-sulfursubunit,chloroplastic;AltName:Full=Plastohydroquinone:plastocyaninoxidoreductaseiron-sulfurprotein;AltName:Full=Rieskeiron-sulfurprotein;Short=ISP;Short=RISP;Flags:Precursor 234 7.27407e-60
whkv_11015_a01r 2012 3' Shoot grown with continuous light after cold treatment 662bp Contig7395       coldacclimationproteinWCOR410c[Triticumaestivum] 428 5.44543e-118
whkv_13015_a01r 2012 3' Shoot grown with continuous light after cold treatment 261bp       HypotheticalproteinCBG16448[Caenorhabditisbriggsae] 35 8.53707
whkv_14015_a01r 2012 3' Shoot grown with continuous light after cold treatment 368bp Contig13730       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 1.1436e-49
whkv_15015_a01r 2012 3' Shoot grown with continuous light after cold treatment 752bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Crithopsisdelileana] 519 3.08836e-145
whkv_16015_a01r 2012 3' Shoot grown with continuous light after cold treatment 641bp Contig2804       hexaubiquitinprotein[Arabidopsislyratasubsp.lyrata] 280 2.19791e-73
whkv_20015_a01r 2012 3' Shoot grown with continuous light after cold treatment 544bp Contig4170       S-adenosyl-L-homocysteinehydrolase[Hordeumvulgaresubsp.vulgare] 237 1.78438e-60
whkv_2015_a01r 2012 3' Shoot grown with continuous light after cold treatment 583bp       RRNAintron-encodedhomingendonuclease[Medicagotruncatula] 129 4.86656e-28
whkv_3015_a01r 2012 3' Shoot grown with continuous light after cold treatment 213bp Contig11259       unnamedproteinproduct[TrypanosomacongolenseIL3000] 36 4.88294
whkv_4015_a01r 2012 3' Shoot grown with continuous light after cold treatment 481bp       ascorbateperoxidase[Triticumaestivum] 117 1.28133e-24
whkv_6015_a01r 2012 3' Shoot grown with continuous light after cold treatment 400bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 57 1.22979e-06
whkv_7015_a01r 2012 3' Shoot grown with continuous light after cold treatment 392bp Contig18561       Os02g0178400[OryzasativaJaponicaGroup] 140 2.40018e-31
whkv_9015_a01r 2012 3' Shoot grown with continuous light after cold treatment 749bp Contig2743       RecName:Full=Phosphoribulokinase,chloroplastic;Short=PRK;Short=PRKase;AltName:Full=Phosphopentokinase;Flags:Precursor 331 2.01658e-88
whkv_1015_a02r 2012 3' Shoot grown with continuous light after cold treatment 533bp Contig6630       chlorophyllideaoxygenase[Hordeumvulgare] 136 2.35924e-30
whkv_12015_a02r 2012 3' Shoot grown with continuous light after cold treatment 324bp Contig13713       putativeTdLFC69protein[Triticumdurum] 111 1.21932e-22
whkv_14015_a02r 2012 3' Shoot grown with continuous light after cold treatment 755bp Contig20696       profilin[Triticumaestivum] 278 1.57892e-72
whkv_15015_a02r 2012 3' Shoot grown with continuous light after cold treatment 71bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Boragoofficinalis] 54 1.24604e-05
whkv_17015_a02r 2012 3' Shoot grown with continuous light after cold treatment 730bp Contig14788       predictedprotein[Hordeumvulgaresubsp.vulgare] 354 2.10526e-95
whkv_18015_a02r 2012 3' Shoot grown with continuous light after cold treatment 736bp Contig2875       chlorophylla/b-bindingproteinWCABprecursor[Triticumaestivum] 448 1.09146e-123
whkv_19015_a02r 2012 3' Shoot grown with continuous light after cold treatment 663bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 146 7.05011e-33
whkv_20015_a02r 2012 3' Shoot grown with continuous light after cold treatment 695bp       PREDICTED:uncharacterizedproteinAt5g03900,chloroplastic-likeisoform1[Brachypodiumdistachyon] 177 2.432e-42
whkv_4015_a02r 2012 3' Shoot grown with continuous light after cold treatment 654bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 9.99951e-85
whkv_5015_a02r 2012 3' Shoot grown with continuous light after cold treatment 616bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 3.2518e-92
whkv_6015_a02r 2012 3' Shoot grown with continuous light after cold treatment 691bp Contig6824       predictedprotein[Hordeumvulgaresubsp.vulgare] 347 2.29325e-93
whkv_7015_a02r 2012 3' Shoot grown with continuous light after cold treatment 739bp Contig7521       RecName:Full=Ribulosebisphosphatecarboxylase/oxygenaseactivaseA,chloroplastic;Short=RAA;Short=RuBisCOactivaseA;Flags:Precursor 343 2.62139e-109
whkv_9015_a02r 2012 3' Shoot grown with continuous light after cold treatment 35bp            
whkv_1016_a03r 2012 3' Shoot grown with continuous light after cold treatment 401bp Contig12167       predictedprotein[Hordeumvulgaresubsp.vulgare] 111 9.33448e-23
whkv_12016_a03r 2012 3' Shoot grown with continuous light after cold treatment 547bp Contig37015       predictedprotein[Hordeumvulgaresubsp.vulgare] 262 4.02781e-68
whkv_15016_a03r 2012 3' Shoot grown with continuous light after cold treatment 159bp       PREDICTED:F-boxonlyprotein41[Loxodontaafricana] 36 3.8096
whkv_16016_a03r 2012 3' Shoot grown with continuous light after cold treatment 735bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 368 1.42215e-99
whkv_20016_a03r 2012 3' Shoot grown with continuous light after cold treatment 214bp Contig6743            
whkv_2016_a03r 2012 3' Shoot grown with continuous light after cold treatment 689bp Contig16363       Os02g0726400[OryzasativaJaponicaGroup] 235 1.25656e-59
whkv_3016_a03r 2012 3' Shoot grown with continuous light after cold treatment 671bp Contig28504       predictedprotein[Hordeumvulgaresubsp.vulgare] 374 1.24143e-101
whkv_4016_a03r 2012 3' Shoot grown with continuous light after cold treatment 674bp Contig6790       predictedprotein[Hordeumvulgaresubsp.vulgare] 372 6.23197e-101
whkv_7016_a03r 2012 3' Shoot grown with continuous light after cold treatment 273bp Contig25765       predictedprotein[Hordeumvulgaresubsp.vulgare] 193 1.41105e-47
whkv_9016_a03r 2012 3' Shoot grown with continuous light after cold treatment 622bp Contig8323       PREDICTED:abscisicstress-ripeningprotein3-like[Brachypodiumdistachyon] 207 1.70264e-51
whkv_1016_a04r 2012 3' Shoot grown with continuous light after cold treatment 676bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 199 7.31237e-49
whkv_11016_a04r 2012 3' Shoot grown with continuous light after cold treatment 669bp       Os06g0582600[OryzasativaJaponicaGroup] 199 5.49953e-49
whkv_12016_a04r 2012 3' Shoot grown with continuous light after cold treatment 717bp Contig11419       PREDICTED:pollen-specificproteinSF3-like[Brachypodiumdistachyon] 368 7.94782e-100
whkv_13016_a04r 2012 3' Shoot grown with continuous light after cold treatment 720bp Contig35094       RecName:Full=RibulosebisphosphatecarboxylasesmallchainPWS4.3,chloroplastic;Short=RuBisCOsmallsubunitPWS4.3;Flags:Precursor 351 1.31309e-94
whkv_14016_a04r 2012 3' Shoot grown with continuous light after cold treatment 514bp       PREDICTED:60SribosomalproteinL36a-likeisoform1[Brachypodiumdistachyon] 224 7.70429e-57
whkv_15016_a04r 2012 3' Shoot grown with continuous light after cold treatment 225bp       hypotheticalproteinBRAFLDRAFT_124384[Branchiostomafloridae] 36 3.84643
whkv_16016_a04r 2012 3' Shoot grown with continuous light after cold treatment 642bp Contig7591       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 363 3.36737e-98
whkv_18016_a04r 2012 3' Shoot grown with continuous light after cold treatment 60bp Contig4366       ATP-dependentClpproteaseregulatorysubunit[CrocosphaerawatsoniiWH0003] 44 0.0139119
whkv_19016_a04r 2012 3' Shoot grown with continuous light after cold treatment 700bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.46291e-92
whkv_20016_a04r 2012 3' Shoot grown with continuous light after cold treatment 563bp Contig614       Chainv,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 218 7.33698e-55
whkv_2016_a04r 2012 3' Shoot grown with continuous light after cold treatment 635bp Contig14088       PREDICTED:6-phosphogluconatedehydrogenase,decarboxylating-likeisoform1[Brachypodiumdistachyon] 299 4.45506e-79
whkv_3016_a04r 2012 3' Shoot grown with continuous light after cold treatment 644bp Contig16071       vacuolarproton-inorganicpyrophosphatase[Triticumaestivum] 222 5.50853e-56
whkv_5016_a04r 2012 3' Shoot grown with continuous light after cold treatment 462bp Contig11558       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 1.95451e-49
whkv_8016_a04r 2012 3' Shoot grown with continuous light after cold treatment 752bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 357 2.65109e-96
whkv_9016_a04r 2012 3' Shoot grown with continuous light after cold treatment 629bp       hypotheticalprotein[OryzasativaJaponicaGroup] 121 1.64872e-25
whkv_12031_a05r 2012 3' Shoot grown with continuous light after cold treatment 458bp Contig6574       putativeleucinezipperprotein[Triticumaestivum] 101 9.50267e-20
whkv_13031_a05r 2012 3' Shoot grown with continuous light after cold treatment 742bp Contig2266       predictedprotein[Hordeumvulgaresubsp.vulgare] 323 3.13328e-86
whkv_14031_a05r 2012 3' Shoot grown with continuous light after cold treatment 699bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 368 7.59494e-100
whkv_15031_a05r 2012 3' Shoot grown with continuous light after cold treatment 754bp Contig4599       predictedprotein[Hordeumvulgaresubsp.vulgare] 435 1.00043e-119
whkv_16031_a05r 2012 3' Shoot grown with continuous light after cold treatment 727bp Contig16396       predictedprotein[Hordeumvulgaresubsp.vulgare] 333 4.97512e-89
whkv_2031_a05r 2012 3' Shoot grown with continuous light after cold treatment 404bp Contig7644       RecName:Full=RibulosebisphosphatecarboxylasesmallchainPW9,chloroplastic;Short=RuBisCOsmallsubunitPW9;Flags:Precursor 175 6.84651e-42
whkv_6031_a05r 2012 3' Shoot grown with continuous light after cold treatment 695bp       conservedhypotheticalprotein[NeosporacaninumLiverpool] 47 0.00290634
whkv_7031_a05r 2012 3' Shoot grown with continuous light after cold treatment 710bp Contig7104       predictedprotein[Hordeumvulgaresubsp.vulgare] 295 8.42387e-78
whkv_9031_a05r 2012 3' Shoot grown with continuous light after cold treatment 686bp       PREDICTED:intron-bindingproteinaquarius[Brachypodiumdistachyon] 389 3.9435e-106
whkv_1031_a06r 2012 3' Shoot grown with continuous light after cold treatment 769bp       PREDICTED:ADP-ribosylationfactorGTPase-activatingproteinAGD2-like[Brachypodiumdistachyon] 300 3.06012e-79
whkv_11031_a06r 2012 3' Shoot grown with continuous light after cold treatment 522bp Contig3764       PREDICTED:uncharacterizedproteinLOC100856432[Canislupusfamiliaris] 38 0.798369
whkv_12031_a06r 2012 3' Shoot grown with continuous light after cold treatment 712bp Contig13951       PREDICTED:6-phosphogluconatedehydrogenase,decarboxylating-likeisoform1[Brachypodiumdistachyon] 337 1.93303e-90
whkv_13031_a06r 2012 3' Shoot grown with continuous light after cold treatment 647bp Contig1956       alpha-tubulin[Alopecurusaequalis] 375 5.14894e-102
whkv_15031_a06r 2012 3' Shoot grown with continuous light after cold treatment 197bp Contig7521       Unknown(proteinforMGC:35458)[Homosapiens] 135 4.61869e-30
whkv_18031_a06r 2012 3' Shoot grown with continuous light after cold treatment 752bp Contig9262       predictedprotein[Hordeumvulgaresubsp.vulgare] 337 2.83903e-90
whkv_19031_a06r 2012 3' Shoot grown with continuous light after cold treatment 719bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 243 6.02909e-105
whkv_20031_a06r 2012 3' Shoot grown with continuous light after cold treatment 702bp Contig6300       predictedprotein[Hordeumvulgaresubsp.vulgare] 357 2.28677e-96
whkv_2031_a06r 2012 3' Shoot grown with continuous light after cold treatment 731bp Contig14533       beta-tubulin2[Hordeumvulgaresubsp.vulgare] 327 2.75594e-87
whkv_3031_a06r 2012 3' Shoot grown with continuous light after cold treatment 745bp Contig30775       cytosolicmalatedehydrogenase[Triticumaestivum] 306 5.27162e-81
whkv_6031_a06r 2012 3' Shoot grown with continuous light after cold treatment 610bp Contig10665       cobalamin-independentmethioninesynthase[Triticummonococcum] 281 8.76956e-74
whkv_7031_a06r 2012 3' Shoot grown with continuous light after cold treatment 723bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 3.78034e-49
whkv_8031_a06r 2012 3' Shoot grown with continuous light after cold treatment 728bp Contig18716       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 356 5.48789e-96
whkv_9031_a06r 2012 3' Shoot grown with continuous light after cold treatment 710bp       91Aprotein,partial[Triticumdicoccoides] 241 1.88537e-61
whkv_1032_a07r 2012 3' Shoot grown with continuous light after cold treatment 693bp       PREDICTED:potassiumtransporter5-likeisoform2[Brachypodiumdistachyon] 188 1.78048e-45
whkv_12032_a07r 2012 3' Shoot grown with continuous light after cold treatment 711bp Contig6604       ubiquitin-conjugatingenzymeE2-likeprotein[Loliumperenne] 319 5.42121e-85
whkv_15032_a07r 2012 3' Shoot grown with continuous light after cold treatment 704bp Contig14586       bluecopperprotein[Triticumaestivum] 333 2.73547e-89
whkv_18032_a07r 2012 3' Shoot grown with continuous light after cold treatment 640bp Contig2806       PREDICTED:uncharacterizedproteinC2orf16-like[Macacamulatta] 52 0.000127142
whkv_19032_a07r 2012 3' Shoot grown with continuous light after cold treatment 714bp Contig7563       predictedprotein[Hordeumvulgaresubsp.vulgare] 364 1.4695e-98
whkv_20032_a07r 2012 3' Shoot grown with continuous light after cold treatment 540bp Contig2925       PREDICTED:uncharacterizedproteinLOC100841437isoform1[Brachypodiumdistachyon] 166 2.90132e-39
whkv_2032_a07r 2012 3' Shoot grown with continuous light after cold treatment 592bp Contig8710       PREDICTED:40SribosomalproteinS17-2-like[Brachypodiumdistachyon] 260 1.49294e-67
whkv_3032_a07r 2012 3' Shoot grown with continuous light after cold treatment 674bp Contig10703       predictedprotein[Hordeumvulgaresubsp.vulgare] 311 1.70502e-82
whkv_4032_a07r 2012 3' Shoot grown with continuous light after cold treatment 429bp Contig21342       hypotheticalprotein[CryptosporidiummurisRN66] 38 0.994992
whkv_7032_a07r 2012 3' Shoot grown with continuous light after cold treatment 705bp       superoxidedismutase[Triticumaestivum] 314 1.71737e-83
whkv_9032_a07r 2012 3' Shoot grown with continuous light after cold treatment 596bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 192 6.62299e-47
whkv_1032_a08r 2012 3' Shoot grown with continuous light after cold treatment 693bp Contig2648       proteindisulfideisomerase,partial[Triticumdurum] 360 2.00433e-97
whkv_11032_a08r 2012 3' Shoot grown with continuous light after cold treatment 685bp Contig2807       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 2.5697e-49
whkv_12032_a08r 2012 3' Shoot grown with continuous light after cold treatment 764bp Contig2173       predictedprotein[Hordeumvulgaresubsp.vulgare] 392 5.81675e-107
whkv_13032_a08r 2012 3' Shoot grown with continuous light after cold treatment 196bp Contig23977       GAPDH,partial[Oncidiumhybridcultivar] 133 2.99375e-29
whkv_17032_a08r 2012 3' Shoot grown with continuous light after cold treatment 764bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 327 3.00128e-87
whkv_19032_a08r 2012 3' Shoot grown with continuous light after cold treatment 624bp Contig7391       protongradientregulation5[Triticumaestivum] 243 2.83835e-62
whkv_20032_a08r 2012 3' Shoot grown with continuous light after cold treatment 342bp Contig7295       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 86 6.38078e-32
whkv_2032_a08r 2012 3' Shoot grown with continuous light after cold treatment 154bp            
whkv_4032_a08r 2012 3' Shoot grown with continuous light after cold treatment 534bp Contig5814       Chaint,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 214 1.51861e-53
whkv_5032_a08r 2012 3' Shoot grown with continuous light after cold treatment 665bp Contig22809       predictedprotein[Hordeumvulgaresubsp.vulgare] 262 8.9193e-68
whkv_7032_a08r 2012 3' Shoot grown with continuous light after cold treatment 565bp       RecName:Full=HistoneH2B.3;AltName:Full=wcH2B-8 265 5.2337e-69
whkv_8032_a08r 2012 3' Shoot grown with continuous light after cold treatment 300bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 59 4.18526e-07
whkv_1047_a09r 2012 3' Shoot grown with continuous light after cold treatment 723bp Contig22838       predictedprotein[Hordeumvulgaresubsp.vulgare] 354 2.04568e-95
whkv_12047_a09r 2012 3' Shoot grown with continuous light after cold treatment 752bp Contig7002       PREDICTED:probableglutathioneperoxidase4-like[Brachypodiumdistachyon] 333 3.13891e-89
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