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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 2679
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whsh_13001_a01f 2012 5' - 235bp Contig2932            
whsh_15001_a01f 2012 5' - 117bp            
whsh_17001_a01f 2012 5' - 412bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 113 2.62717e-42
whsh_18001_a01f 2012 5' - 143bp       P450[Triticumaestivum] 44 0.0178713
whsh_3001_a01f 2012 5' - 284bp Contig34291       predictedprotein[Hordeumvulgaresubsp.vulgare] 103 3.24085e-20
whsh_4001_a01f 2012 5' - 167bp Contig6445            
whsh_5001_a01f 2012 5' - 214bp Contig20689       RecName:Full=PhotosystemIreactioncentersubunitXI,chloroplastic;Short=PSI-L;AltName:Full=PSIsubunitV;Flags:Precursor 58 9.18749e-07
whsh_6001_a01f 2012 5' - 309bp Contig5733       PREDICTED:N-alpha-acetyltransferase50-likeisoform2[Brachypodiumdistachyon] 70 2.34515e-10
whsh_7001_a01f 2012 5' - 126bp Contig34904            
whsh_9001_a01f 2012 5' - 312bp            
whsh_11017_a02f 2012 5' - 448bp Contig21192       unknown[Zeamays] 88 1.10633e-15
whsh_15017_a02f 2012 5' - 214bp       ethanolamineutilizationproteinEutH[EscherichiacoliCUMT8] 133 2.93502e-29
whsh_16017_a02f 2012 5' - 36bp            
whsh_4017_a02f 2012 5' - 197bp       xylanaseinhibitorprecursor[Triticumaestivum] 72 4.80182e-11
whsh_10033_a03f 2012 5' - 580bp Contig19969       putativerubiscosmallsubunit[Triticumdurum] 245 7.94756e-63
whsh_1033_a03f 2012 5' - 137bp            
whsh_18033_a03f 2012 5' - 324bp Contig7735       predictedprotein[Hordeumvulgaresubsp.vulgare] 61 1.44164e-07
whsh_3033_a03f 2012 5' - 168bp Contig33843            
whsh_5033_a03f 2012 5' - 173bp            
whsh_9033_a03f 2012 5' - 102bp Contig1095            
whsh_10049_a04f 2012 5' - 235bp Contig6435       hypotheticalproteinLOAG_04717[Loaloa] 37 2.23228
whsh_12049_a04f 2012 5' - 552bp Contig18019       predictedprotein[Hordeumvulgaresubsp.vulgare] 254 1.11882e-65
whsh_13049_a04f 2012 5' - 550bp Contig32607       PhotosystemII10kDapolypeptide,chloroplast[Salmosalar] 245 5.1971e-63
whsh_15049_a04f 2012 5' - 345bp       phycobilisomeprotein[Cyanothecesp.PCC7424] 36 5.00639
whsh_17049_a04f 2012 5' - 528bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Triticumaestivum] 334 9.63106e-90
whsh_18049_a04f 2012 5' - 35bp            
whsh_2049_a04f 2012 5' - 641bp Contig25312       predictedprotein[Hordeumvulgaresubsp.vulgare] 338 1.16004e-90
whsh_3049_a04f 2012 5' - 197bp       traXprotein[EscherichiacoliDEC9C] 69 4.06498e-10
whsh_4049_a04f 2012 5' - 233bp       hypotheticalproteinHMPREF0986_04844[Escherichiacoli4_1_47FAA] 155 7.34549e-36
whsh_8049_a04f 2012 5' - 374bp Contig35257       predictedprotein[Hordeumvulgaresubsp.vulgare] 145 5.85168e-33
whsh_10065_a05f 2012 5' - 130bp Contig7547       morphogenesisprotein[Leymussecalinus] 88 8.36582e-16
whsh_11065_a05f 2012 5' - 223bp       hypotheticalprotein[Parameciumtetraureliastraind4-2] 36 2.94511
whsh_12065_a05f 2012 5' - 277bp Contig27810       Celldivisioncycleprotein-likeprotein[Medicagotruncatula] 36 4.91766
whsh_14065_a05f 2012 5' - 339bp Contig5805       predictedprotein[Hordeumvulgaresubsp.vulgare] 57 2.04272e-06
whsh_16065_a05f 2012 5' - 247bp Contig1500       PREDICTED:chlorophylla-bbindingprotein2,chloroplastic-likeisoform6[Brachypodiumdistachyon] 62 4.89417e-08
whsh_2065_a05f 2012 5' - 240bp Contig5889            
whsh_5066_a05f 2012 5' - 428bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 125 8.11738e-27
whsh_6066_a05f 2012 5' - 402bp Contig17326       NADHdehydrogenase49KDasubunit[Acoruscalamus] 145 7.61839e-33
whsh_9065_a05f 2012 5' - 158bp Contig7740            
whsh_11081_a06f 2012 5' - 102bp            
whsh_13081_a06f 2012 5' - 219bp Contig6300       PREDICTED:hypotheticalproteinLOC100602241[Nomascusleucogenys] 41 0.119971
whsh_15081_a06f 2012 5' - 544bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 218 6.53658e-55
whsh_18081_a06f 2012 5' - 336bp Contig5735       GF25205[Drosophilaananassae] 36 2.86791
whsh_2081_a06f 2012 5' - 214bp            
whsh_6082_a06f 2012 5' - 152bp Contig6830       PREDICTED:hypotheticalproteinLOC100602241[Nomascusleucogenys] 41 0.119546
whsh_7081_a06f 2012 5' - 335bp Contig7038       unnamedproteinproduct[ShewanellasediminisHAW-EB3] 35 8.37607
whsh_9081_a06f 2012 5' - 274bp Contig33793       GI18310[Drosophilamojavensis] 37 1.69018
whsh_11001_a07f 2012 5' - 62bp Contig13265            
whsh_17001_a07f 2012 5' - 325bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 67 2.01164e-09
whsh_2001_a07f 2012 5' - 187bp Contig7359            
whsh_5001_a07f 2012 5' - 266bp            
whsh_6001_a07f 2012 5' - 500bp Contig11554       predictedprotein[Hordeumvulgaresubsp.vulgare] 131 8.56239e-29
whsh_8001_a07f 2012 5' - 557bp Contig35067       serinehydroxymethyltransferase[Triticummonococcum] 227 1.52205e-57
whsh_1017_a08f 2012 5' - 139bp            
whsh_11017_a08f 2012 5' - 63bp Contig5736            
whsh_13017_a08f 2012 5' - 271bp Contig7038       unnamedproteinproduct[ShewanellasediminisHAW-EB3] 35 8.41802
whsh_15017_a08f 2012 5' - 152bp       hypotheticalproteinECMT8_06244[EscherichiacoliCUMT8] 103 2.56165e-20
whsh_3017_a08f 2012 5' - 182bp Contig33274       hypotheticalproteinOsI_26157[OryzasativaIndicaGroup] 37 2.18406
whsh_5017_a08f 2012 5' - 44bp            
whsh_6017_a08f 2012 5' - 175bp Contig6829            
whsh_7017_a08f 2012 5' - 167bp Contig14850            
whsh_1033_a09f 2012 5' - 211bp Contig6300       predictedprotein[Hordeumvulgaresubsp.vulgare] 51 0.000112684
whsh_15033_a09f 2012 5' - 82bp Contig34858            
whsh_3033_a09f 2012 5' - 505bp Contig7521       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 258 1.98514e-75
whsh_7033_a09f 2012 5' - 220bp Contig5737       conservedhypotheticalprotein[NeosporacaninumLiverpool] 35 6.58305
whsh_10049_a10f 2012 5' - 285bp Contig12852       conservedhypotheticalprotein[AlbugolaibachiiNc14] 37 2.18394
whsh_11049_a10f 2012 5' - 387bp Contig12260       hypotheticalproteinCX157[Homosapiens] 148 8.88503e-34
whsh_12049_a10f 2012 5' - 101bp Contig3004       predictedprotein[Hordeumvulgaresubsp.vulgare] 43 0.0233494
whsh_13049_a10f 2012 5' - 454bp Contig12990       predictedprotein[Hordeumvulgaresubsp.vulgare] 163 2.04518e-38
whsh_2049_a10f 2012 5' - 509bp Contig6353       predictedprotein[Hordeumvulgaresubsp.vulgare] 146 2.6136e-33
whsh_3049_a10f 2012 5' - 454bp Contig5738       endotransglucosylase/hydrolaseXTH1[Triticumaestivum] 99 3.62686e-19
whsh_6049_a10f 2012 5' - 260bp Contig6300       mCG1051063[Musmusculus] 41 0.119125
whsh_9049_a10f 2012 5' - 545bp Contig7038       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 175 4.85888e-42
whsh_14065_a11f 2012 5' - 614bp Contig5739       predictedprotein[Hordeumvulgaresubsp.vulgare] 136 3.53931e-30
whsh_2065_a11f 2012 5' - 420bp Contig6901       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 180 1.64177e-43
whsh_5066_a11f 2012 5' - 56bp Contig29428            
whsh_7065_a11f 2012 5' - 105bp Contig21802            
whsh_10081_a12f 2012 5' - 478bp Contig35241       RecName:Full=PhotosystemIreactioncentersubunitN,chloroplastic;Short=PSI-N;Flags:Precursor 218 6.99735e-55
whsh_13081_a12f 2012 5' - 430bp       PREDICTED:uncharacterizedproteinLOC100844387[Brachypodiumdistachyon] 156 1.91946e-36
whsh_16081_a12f 2012 5' - 128bp Contig34291            
whsh_17081_a12f 2012 5' - 510bp Contig13996       predictedprotein[Hordeumvulgaresubsp.vulgare] 183 1.47032e-44
whsh_2081_a12f 2012 5' - 193bp Contig12588            
whsh_3081_a12f 2012 5' - 283bp Contig12292       PREDICTED:uncharacterizedproteinLOC100840579[Brachypodiumdistachyon] 78 8.54836e-13
whsh_1001_a13f 2012 5' - 66bp Contig1500       unknown[Lotusjaponicus] 49 0.000500749
whsh_13001_a13f 2012 5' - 223bp Contig32559       VacBandRNaseIIfamily3'-5'exoribonuclease[VerrucomicrobiaebacteriumDG1235] 35 6.56102
whsh_15001_a13f 2012 5' - 89bp Contig7709            
whsh_3001_a13f 2012 5' - 150bp Contig35624       predictedprotein[Hordeumvulgaresubsp.vulgare] 74 1.66427e-11
whsh_5001_a13f 2012 5' - 361bp       peptidechainreleasefactor2(RF-2),partial[EscherichiacoliTA280] 234 7.23093e-60
whsh_6001_a13f 2012 5' - 386bp Contig33286       predictedprotein[Hordeumvulgaresubsp.vulgare] 148 5.20889e-34
whsh_1017_a14f 2012 5' - 334bp       FADdependentoxidoreductase[EnterococcusfaeciumPC4.1] 36 3.7741
whsh_12017_a14f 2012 5' - 373bp Contig20551       predictedprotein[Hordeumvulgaresubsp.vulgare] 180 1.25681e-43
whsh_14017_a14f 2012 5' - 545bp Contig35094       RecName:Full=RibulosebisphosphatecarboxylasesmallchainPWS4.3,chloroplastic;Short=RuBisCOsmallsubunitPWS4.3;Flags:Precursor 298 6.49126e-79
whsh_15017_a14f 2012 5' - 210bp            
whsh_16017_a14f 2012 5' - 131bp Contig18810            
whsh_17017_a14f 2012 5' - 410bp Contig2567       cobalamin-independentmethioninesynthase[Triticummonococcum] 115 4.88892e-24
whsh_18017_a14f 2012 5' - 366bp       Fructose-likepermeaseIICcomponent[Escherichiacoli541-1] 190 1.18344e-46
whsh_2017_a14f 2012 5' - 429bp       FADdependentoxidoreductase[EnterococcusfaeciumPC4.1] 36 3.78097
whsh_5017_a14f 2012 5' - 357bp Contig2780       predictedprotein[Hordeumvulgaresubsp.vulgare] 93 2.61194e-17
whsh_6017_a14f 2012 5' - 87bp            
whsh_1033_a15f 2012 5' - 492bp Contig7521       Unknown(proteinforMGC:35458)[Homosapiens] 333 1.15176e-89
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