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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 3000
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
CJ733987 rwhsh1a02 3' - 265bp whsh_all.Contig1253       Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor (CAB) 281 7.46046e-24
CJ733988 rwhsh1a03 3' - 126bp whsh_all.Contig878            
CJ733989 rwhsh1a08 3' - 273bp whsh_all.Contig876            
CJ733990 rwhsh1a09 3' - 220bp whsh_all.Contig1279       Ribulose bisphosphate carboxylase small chain clone 512 (RuBisCO small subunit) 182 2.27451e-12
CJ733991 rwhsh1a14 3' - 482bp whsh_all.Contig1072       GD13423 [Drosophila simulans] 84 0.510542
CJ733992 rwhsh1a15 3' - 667bp whsh_all.Contig1276       ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum] 496 2.13492e-67
CJ733993 rwhsh1a19 3' - 112bp            
CJ733994 rwhsh1a20 3' - 290bp whsh_all.Contig1266       chloroplast chlorophyll a-b binding protein 8 [Oryza sativa (indica cultivar-group)] 181 2.95432e-12
CJ733995 rwhsh1a21 3' - 103bp            
CJ733996 rwhsh1a22 3' - 382bp whsh_all.Contig1239       chlorophyll a/b-binding protein precursor [Hordeum vulgare] 460 1.29721e-44
CJ733997 rwhsh1b01 3' - 672bp whsh_all.Contig872       Os02g0615500 [Oryza sativa (japonica cultivar-group)] 463 1.35938e-44
CJ733998 rwhsh1b02 3' - 709bp whsh_all.Contig1253       Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor (CAB) 949 6.77841e-101
CJ733999 rwhsh1b05 3' - 400bp whsh_all.Contig879       unknown [Zea mays] 254 1.00921e-20
CJ734000 rwhsh1b07 3' - 331bp whsh_all.Contig1251       chlorophyll a/b-binding protein precursor [Hordeum vulgare] 355 1.93725e-32
CJ734001 rwhsh1b12 3' - 286bp whsh_all.Contig882       OSIGBa0140O07.4 [Oryza sativa (indica cultivar-group)] 114 0.000174219
CJ734002 rwhsh1b13 3' - 153bp whsh_all.Contig883            
CJ734003 rwhsh1b14 3' - 198bp whsh_all.Contig1108            
CJ734004 rwhsh1b16 3' - 619bp whsh_all.Contig1237       Ribulose bisphosphate carboxylase small chain PW9, chloroplast precursor (RuBisCO small subunit PW9) 394 2.85728e-68
CJ734005 rwhsh1b17 3' - 311bp whsh_all.Contig1255       plastocyanin precursor [Hordeum vulgare] 302 2.68368e-26
CJ734006 rwhsh1b18 3' - 682bp whsh_all.Contig873       blz-1 protein [Hordeum vulgare subsp. vulgare] 849 2.46816e-89
CJ734007 rwhsh1b20 3' - 125bp            
CJ734008 rwhsh1b21 3' - 490bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Beckmannia syzigachne] 806 9.87927e-85
CJ734009 rwhsh1b22 3' - 205bp whsh_all.Contig1264            
CJ734010 rwhsh1b23 3' - 256bp whsh_all.Contig1238       Photosystem I reaction center subunit N, chloroplast precursor (PSI-N) 279 1.28579e-23
CJ734011 rwhsh1c01 3' - 182bp whsh_all.Contig1183            
CJ734012 rwhsh1c02 3' - 117bp whsh_all.Contig1231            
CJ734013 rwhsh1c03 3' - 228bp       homeodomain-leucine zipper transcription factor TaHDZipI-1 [Triticum aestivum] 253 1.32153e-20
CJ734014 rwhsh1c06 3' - 295bp whsh_all.Contig974       hypothetical protein [Trypanosoma cruzi strain CL Brener] 73 9.78737
CJ734015 rwhsh1c13 3' - 401bp whsh_all.Contig1208       Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (Rieske iron-sulfur protein) (RISP) (ISP) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) 567 1.69412e-57
CJ734016 rwhsh1c15 3' - 210bp whsh_all.Contig1221       putative rubisco small subunit [Triticum turgidum subsp. durum] 325 5.80964e-29
CJ734017 rwhsh1c16 3' - 219bp whsh_all.Contig1210       Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (Rieske iron-sulfur protein) (RISP) (ISP) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) 141 1.29154e-07
CJ734018 rwhsh1c19 3' - 169bp            
CJ734019 rwhsh1c20 3' - 223bp whsh_all.Contig1213       Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) (Photosystem I 10.8 kDa polypeptide) 104 0.0025206
CJ734020 rwhsh1c21 3' - 136bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Lygeum spartum] 230 5.9998e-18
CJ734021 rwhsh1c22 3' - 665bp whsh_all.Contig1078       translation initiation factor eIF1 [synthetic construct] 553 4.87308e-55
CJ734022 rwhsh1c23 3' - 544bp whsh_all.Contig889       unnamed protein product [Vitis vinifera] 344 5.15283e-31
CJ734023 rwhsh1d03 3' - 205bp whsh_all.Contig1210       Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (Rieske iron-sulfur protein) (RISP) (ISP) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) 141 1.26355e-07
CJ734024 rwhsh1d05 3' - 327bp whsh_all.Contig890            
CJ734025 rwhsh1d09 3' - 137bp whsh_all.Contig886            
CJ734026 rwhsh1d10 3' - 173bp whsh_all.Contig1244            
CJ734027 rwhsh1d11 3' - 366bp whsh_all.Contig1132       ferritin 1 [Hordeum vulgare] 314 1.09201e-27
CJ734028 rwhsh1d13 3' - 387bp whsh_all.Contig1247       light-harvesting chlorophyll a/b protein precursor 438 4.59551e-42
CJ734029 rwhsh1d14 3' - 416bp whsh_all.Contig1282       Ribulose bisphosphate carboxylase small chain clone 512 (RuBisCO small subunit) 378 4.1352e-35
CJ734030 rwhsh1d15 3' - 229bp            
CJ734031 rwhsh1d19 3' - 183bp       chloroplast oxygen-evolving enhancer protein 2 [Limonium bicolor] 155 2.96649e-09
CJ734032 rwhsh1d20 3' - 552bp whsh_all.Contig1272       Os07g0544800 [Oryza sativa (japonica cultivar-group)] 287 2.17439e-29
CJ734033 rwhsh1e04 3' - 735bp       penicillin-binding protein AmpH [Shigella dysenteriae 1012] 606 4.30646e-61
CJ734034 rwhsh1e05 3' - 313bp whsh_all.Contig1132       ferritin 1 [Hordeum vulgare] 215 3.2882e-16
CJ734035 rwhsh1e06 3' - 537bp whsh_all.Contig894       Os07g0470800 [Oryza sativa (japonica cultivar-group)] 218 5.42624e-26
CJ734036 rwhsh1e08 3' - 541bp whsh_all.Contig1226       ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum] 428 8.82347e-60
CJ734037 rwhsh1e10 3' - 648bp whsh_all.Contig885       hypothetical protein OsI_013507 [Oryza sativa (indica cultivar-group)] 505 1.7029e-49
CJ734038 rwhsh1e11 3' - 176bp whsh_all.Contig1247       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 107 0.00109883
CJ734039 rwhsh1e12 3' - 140bp       PREDICTED: similar to dual specificity phosphatase 10 [Apis mellifera] 77 3.29737
CJ734040 rwhsh1e13 3' - 308bp whsh_all.Contig1251       RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic; AltName: Full=LHCI type I CAB-1B-20; AltName: Full=Light-harvesting complex I 20 kDa protein; Flags: Precursor 151 8.70496e-09
CJ734041 rwhsh1e16 3' - 633bp whsh_all.Contig862       Translationally-controlled tumor protein homolog (TCTP) 795 3.82898e-83
CJ734042 rwhsh1e17 3' - 223bp            
CJ734043 rwhsh1e18 3' - 233bp whsh_all.Contig1193       light-harvesting complex IIa protein; 80 1.50891
CJ734044 rwhsh1e19 3' - 681bp whsh_all.Contig1177       phosphoribulokinase; ribulose-5-phosphate kinase [Triticum aestivum] 762 2.99295e-79
CJ734045 rwhsh1e22 3' - 578bp whsh_all.Contig911       triticain alpha [Triticum aestivum] 572 2.21056e-57
CJ734046 rwhsh1e23 3' - 157bp            
CJ734047 rwhsh1e24 3' - 207bp       unknown [Zea mays] 113 0.000222308
CJ734048 rwhsh1f01 3' - 275bp whsh_all.Contig1133       cytochrome b6f complex subunit (petM), putative [Arabidopsis thaliana] 91 0.079152
CJ734049 rwhsh1f03 3' - 720bp whsh_all.Contig1285       ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Crithopsis delileana] 1281 2.2067e-139
CJ734050 rwhsh1f04 3' - 296bp whsh_all.Contig610       isoflavone reductase [Hordeum vulgare] 291 5.15372e-25
CJ734051 rwhsh1f06 3' - 106bp            
CJ734052 rwhsh1f07 3' - 229bp whsh_all.Contig506            
CJ734053 rwhsh1f08 3' - 128bp whsh_all.Contig901       GA23646 [Drosophila pseudoobscura pseudoobscura] 73 9.71178
CJ734054 rwhsh1f09 3' - 546bp whsh_all.Contig405       hypothetical protein OsJ_005554 [Oryza sativa (japonica cultivar-group)] 449 3.44033e-43
CJ734055 rwhsh1f11 3' - 411bp whsh_all.Contig1129       Ribulose bisphosphate carboxylase small chain PW9, chloroplast precursor (RuBisCO small subunit PW9) 326 4.46486e-29
CJ734056 rwhsh1f13 3' - 200bp whsh_all.Contig1247       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 144 5.70895e-08
CJ734057 rwhsh1f16 3' - 469bp whsh_all.Contig1030       non-specific lipid transfer protein 1 precursor [Triticum aestivum] 282 5.73095e-24
CJ734058 rwhsh1f18 3' - 154bp whsh_all.Contig1273            
CJ734059 rwhsh1f19 3' - 373bp whsh_all.Contig78       phosphopyruvate hydratase [Shigella flexneri 5 str. 8401] 566 6.71022e-57
CJ734060 rwhsh1f21 3' - 165bp whsh_all.Contig1205       unknown [Zea mays] 74 7.46428
CJ734061 rwhsh1f23 3' - 391bp whsh_all.Contig1266       chloroplast chlorophyll a-b binding protein 8 [Oryza sativa (indica cultivar-group)] 270 1.38458e-22
CJ734062 rwhsh1f24 3' - 124bp whsh_all.Contig1181            
CJ734063 rwhsh1g04 3' - 262bp whsh_all.Contig1015       unknown [Zea mays] 100 0.00725964
CJ734064 rwhsh1g05 3' - 261bp whsh_all.Contig1237            
CJ734065 rwhsh1g06 3' - 637bp       unknown [Zea mays] 712 1.6321e-73
CJ734066 rwhsh1g09 3' - 357bp       hypothetical protein OsJ_002142 [Oryza sativa (japonica cultivar-group)] 107 0.00110818
CJ734067 rwhsh1g13 3' - 452bp whsh_all.Contig1281       Ribulose bisphosphate carboxylase small chain clone 512 (RuBisCO small subunit) 326 4.48837e-29
CJ734068 rwhsh1g14 3' - 534bp whsh_all.Contig6       unknown [Zea mays] 253 1.70336e-20
CJ734069 rwhsh1g19 3' - 238bp whsh_all.Contig1200       Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) 241 3.21157e-19
CJ734070 rwhsh1g20 3' - 550bp whsh_all.Contig903       hypothetical protein OsJ_015746 [Oryza sativa (japonica cultivar-group)] 662 7.00913e-68
CJ734071 rwhsh1g21 3' - 265bp whsh_all.Contig1236       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 222 5.17853e-17
CJ734072 rwhsh1g24 3' - 145bp whsh_all.Contig174       PREDICTED: similar to glucose dehydrogenase, partial [Acyrthosiphon pisum] 73 9.56442
CJ734073 rwhsh1h01 3' - 230bp whsh_all.Contig1089       crcB-like protein 2, putative [Streptococcus sanguinis SK36] 77 3.3728
CJ734074 rwhsh1h02 3' - 297bp whsh_all.Contig1192       Ferredoxin, chloroplast precursor 214 4.35732e-16
CJ734075 rwhsh1h03 3' - 145bp whsh_all.Contig319            
CJ734076 rwhsh1h10 3' - 184bp whsh_all.Contig1284       PREDICTED: hypothetical protein, partial [Homo sapiens] 80 1.53033
CJ734077 rwhsh1h11 3' - 211bp            
CJ734078 rwhsh1h12 3' - 345bp whsh_all.Contig1061       unknown [Zea mays] 193 1.19945e-13
CJ734079 rwhsh1h14 3' - 373bp whsh_all.Contig487       unknown [Zea mays] 193 1.19828e-13
CJ734080 rwhsh1h17 3' - 128bp whsh_all.Contig857       hypothetical protein OsJ_006455 [Oryza sativa (japonica cultivar-group)] 107 0.0011086
CJ734081 rwhsh1h20 3' - 447bp whsh_all.Contig1151       Ferredoxin, chloroplast precursor 227 1.3662e-17
CJ734082 rwhsh1h21 3' - 104bp whsh_all.Contig1093            
CJ734083 rwhsh1h24 3' - 392bp whsh_all.Contig1253       Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor (CAB) 439 3.49068e-42
CJ734084 rwhsh1i01 3' - 172bp whsh_all.Contig1236       chloroplast chlorophyll a/b-binding protein [Agave tequilana] 90 0.103175
CJ734085 rwhsh1i02 3' - 215bp whsh_all.Contig1189            
CJ734086 rwhsh1i06 3' - 767bp whsh_all.Contig493       putative spindle disassembly related protein CDC48 [Nicotiana tabacum] 614 1.79606e-69
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