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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 8777
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whv3_10015_a01f 2012 5' Shoot grown under cold condition for 3days 540bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 136 2.5131e-30
whv3_1015_a01f 2012 5' Shoot grown under cold condition for 3days 217bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 136 2.02579e-30
whv3_12015_a01f 2012 5' Shoot grown under cold condition for 3days 643bp Contig6477       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.61136e-98
whv3_14015_a01f 2012 5' Shoot grown under cold condition for 3days 592bp       BLT14.1protein[Hordeumvulgaresubsp.vulgare] 149 6.23194e-34
whv3_15015_a01f 2012 5' Shoot grown under cold condition for 3days 726bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.4374e-98
whv3_16015_a01f 2012 5' Shoot grown under cold condition for 3days 540bp Contig4376       cold-responsiveprotein[Triticumaestivum] 201 8.13846e-50
whv3_18015_a01f 2012 5' Shoot grown under cold condition for 3days 650bp Contig6278       proline-richprotein[Triticumaestivum] 373 1.98105e-101
whv3_2015_a01f 2012 5' Shoot grown under cold condition for 3days 179bp Contig1979       cyclophilin3[Dasypyrumvillosum] 130 1.90178e-28
whv3_4015_a01f 2012 5' Shoot grown under cold condition for 3days 704bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 336 4.22022e-90
whv3_10015_a01r 2012 3' Shoot grown under cold condition for 3days 506bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 155 4.32819e-36
whv3_1015_a01r 2012 3' Shoot grown under cold condition for 3days 648bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 322 5.23754e-86
whv3_12015_a01r 2012 3' Shoot grown under cold condition for 3days 574bp Contig6477       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 292 4.12375e-77
whv3_14015_a01r 2012 3' Shoot grown under cold condition for 3days 550bp       BLT14.1protein[Hordeumvulgaresubsp.vulgare] 149 4.96955e-34
whv3_15015_a01r 2012 3' Shoot grown under cold condition for 3days 622bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 295 6.12383e-78
whv3_16015_a01r 2012 3' Shoot grown under cold condition for 3days 501bp Contig4376       cold-responsiveprotein[Triticumaestivum] 201 6.70614e-50
whv3_17015_a01r 2012 3' Shoot grown under cold condition for 3days 443bp Contig6278       proline-richprotein[Triticumaestivum] 148 9.04734e-34
whv3_2015_a01r 2012 3' Shoot grown under cold condition for 3days 349bp Contig1979       cyclophilinA-1[Triticumaestivum] 109 2.71759e-22
whv3_4015_a01r 2012 3' Shoot grown under cold condition for 3days 554bp Contig5861       predictedprotein[Hordeumvulgaresubsp.vulgare] 300 1.38802e-79
whv3_10015_a02f 2012 5' Shoot grown under cold condition for 3days 668bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 439 4.12386e-121
whv3_1015_a02f 2012 5' Shoot grown under cold condition for 3days 458bp Contig7725       PREDICTED:ribulose-phosphate3-epimerase,chloroplastic-like[Brachypodiumdistachyon] 274 1.06974e-71
whv3_13015_a02f 2012 5' Shoot grown under cold condition for 3days 626bp       phosphoethanolaminemethyltransferase[Triticumaestivum] 188 1.08359e-45
whv3_14015_a02f 2012 5' Shoot grown under cold condition for 3days 732bp Contig11259       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.50287e-98
whv3_16015_a02f 2012 5' Shoot grown under cold condition for 3days 779bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 5.14835e-98
whv3_18015_a02f 2012 5' Shoot grown under cold condition for 3days 635bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 326 4.44474e-87
whv3_20015_a02f 2012 5' Shoot grown under cold condition for 3days 746bp Contig14903       predictedprotein[Hordeumvulgaresubsp.vulgare] 281 2.37182e-73
whv3_2015_a02f 2012 5' Shoot grown under cold condition for 3days 291bp Contig26888       PREDICTED:glyceraldehyde-3-phosphatedehydrogenase,cytosolic-like[Brachypodiumdistachyon] 45 0.00822748
whv3_3015_a02f 2012 5' Shoot grown under cold condition for 3days 510bp       calcium-dependentproteinkinase[Triticumaestivum] 305 3.3663e-81
whv3_4015_a02f 2012 5' Shoot grown under cold condition for 3days 710bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 452 4.12295e-125
whv3_5015_a02f 2012 5' Shoot grown under cold condition for 3days 600bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 230 1.67231e-58
whv3_9015_a02f 2012 5' Shoot grown under cold condition for 3days 342bp Contig26249       RecName:Full=GlutathioneS-transferase2;AltName:Full=GSTclass-phi 118 7.46628e-25
whv3_10015_a02r 2012 3' Shoot grown under cold condition for 3days 678bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 344 1.07759e-92
whv3_1015_a02r 2012 3' Shoot grown under cold condition for 3days 195bp Contig7725       PREDICTED:ribulose-phosphate3-epimerase,chloroplastic-like[Brachypodiumdistachyon] 131 8.71048e-29
whv3_13015_a02r 2012 3' Shoot grown under cold condition for 3days 608bp Contig6518       phosphoethanolaminemethyltransferase[Triticumaestivum] 266 2.87704e-69
whv3_14015_a02r 2012 3' Shoot grown under cold condition for 3days 678bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.42411e-94
whv3_15015_a02r 2012 3' Shoot grown under cold condition for 3days 236bp Contig13629       predictedprotein[Hordeumvulgaresubsp.vulgare] 79 2.99287e-13
whv3_16015_a02r 2012 3' Shoot grown under cold condition for 3days 660bp Contig1662       predictedprotein[Hordeumvulgaresubsp.vulgare] 282 6.22889e-74
whv3_20015_a02r 2012 3' Shoot grown under cold condition for 3days 587bp Contig14903       predictedprotein[Hordeumvulgaresubsp.vulgare] 249 3.33423e-64
whv3_2015_a02r 2012 3' Shoot grown under cold condition for 3days 288bp Contig26888       PREDICTED:glyceraldehyde-3-phosphatedehydrogenase,cytosolic-like[Brachypodiumdistachyon] 67 1.55922e-09
whv3_4015_a02r 2012 3' Shoot grown under cold condition for 3days 702bp Contig6883       predictedprotein[Hordeumvulgaresubsp.vulgare] 370 1.99867e-100
whv3_5015_a02r 2012 3' Shoot grown under cold condition for 3days 579bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 246 2.73154e-63
whv3_9015_a02r 2012 3' Shoot grown under cold condition for 3days 317bp Contig26249       RecName:Full=GlutathioneS-transferase2;AltName:Full=GSTclass-phi 137 1.60066e-30
whv3_10016_a03f 2012 5' Shoot grown under cold condition for 3days 755bp Contig35067       predictedprotein[Hordeumvulgaresubsp.vulgare] 476 3.95052e-132
whv3_13016_a03f 2012 5' Shoot grown under cold condition for 3days 687bp       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 338 1.37647e-90
whv3_15016_a03f 2012 5' Shoot grown under cold condition for 3days 575bp Contig11259       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 227 1.26928e-57
whv3_17016_a03f 2012 5' Shoot grown under cold condition for 3days 627bp Contig425       predictedprotein[Hordeumvulgaresubsp.vulgare] 372 5.36269e-101
whv3_18016_a03f 2012 5' Shoot grown under cold condition for 3days 641bp Contig3164       predictedprotein[Hordeumvulgaresubsp.vulgare] 224 1.86929e-56
whv3_19016_a03f 2012 5' Shoot grown under cold condition for 3days 56bp Contig12886            
whv3_20016_a03f 2012 5' Shoot grown under cold condition for 3days 212bp Contig18019            
whv3_4016_a03f 2012 5' Shoot grown under cold condition for 3days 694bp Contig6688       hypotheticalproteinSORBIDRAFT_05g003340[Sorghumbicolor] 137 3.60423e-30
whv3_5016_a03f 2012 5' Shoot grown under cold condition for 3days 605bp Contig19262       chlorophylla/b-bindingproteinWCABprecursor[Triticumaestivum] 395 4.04615e-108
whv3_7016_a03f 2012 5' Shoot grown under cold condition for 3days 580bp Contig7371       RecName:Full=Phosphoglyceratekinase,chloroplastic;Flags:Precursor 275 5.3996e-72
whv3_8016_a03f 2012 5' Shoot grown under cold condition for 3days 693bp Contig8091       translationinitiationfactor[Triticumaestivum] 232 8.23239e-59
whv3_10016_a03r 2012 3' Shoot grown under cold condition for 3days 614bp Contig35067       serinehydroxymethyltransferase[Triticummonococcum] 266 3.86805e-69
whv3_13016_a03r 2012 3' Shoot grown under cold condition for 3days 533bp Contig9536       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 297 1.04438e-78
whv3_14016_a03r 2012 3' Shoot grown under cold condition for 3days 41bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 34 5.77478
whv3_15016_a03r 2012 3' Shoot grown under cold condition for 3days 548bp Contig11259       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 244 1.48247e-62
whv3_17016_a03r 2012 3' Shoot grown under cold condition for 3days 614bp Contig3164       predictedprotein[Hordeumvulgaresubsp.vulgare] 240 1.74032e-61
whv3_18016_a03r 2012 3' Shoot grown under cold condition for 3days 739bp Contig425       predictedprotein[Hordeumvulgaresubsp.vulgare] 370 3.81245e-100
whv3_19016_a03r 2012 3' Shoot grown under cold condition for 3days 153bp            
whv3_4016_a03r 2012 3' Shoot grown under cold condition for 3days 505bp       PREDICTED:uncharacterizedproteinLOC100844872[Brachypodiumdistachyon] 108 5.91588e-22
whv3_5016_a03r 2012 3' Shoot grown under cold condition for 3days 353bp Contig19262       chlorophylla/b-bindingproteinWCABprecursor[Triticumaestivum] 223 1.67998e-56
whv3_7016_a03r 2012 3' Shoot grown under cold condition for 3days 548bp Contig7371       RecName:Full=Phosphoglyceratekinase,chloroplastic;Flags:Precursor 287 1.1692e-75
whv3_8016_a03r 2012 3' Shoot grown under cold condition for 3days 677bp Contig8091       translationinitiationfactor[Triticumaestivum] 232 7.7945e-59
whv3_1016_a04f 2012 5' Shoot grown under cold condition for 3days 458bp Contig2671       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 305 3.31767e-81
whv3_13016_a04f 2012 5' Shoot grown under cold condition for 3days 682bp Contig33417       GTP-bindingprotein[Triticumaestivum] 462 4.73515e-128
whv3_15016_a04f 2012 5' Shoot grown under cold condition for 3days 663bp       PREDICTED:delta-1-pyrroline-5-carboxylatesynthase-like[Brachypodiumdistachyon] 288 8.79517e-76
whv3_16016_a04f 2012 5' Shoot grown under cold condition for 3days 470bp Contig21054       70kDaheatshockprotein[Triticumaestivum] 304 9.78331e-81
whv3_17016_a04f 2012 5' Shoot grown under cold condition for 3days 513bp Contig1082       predictedprotein[Hordeumvulgaresubsp.vulgare] 160 2.27364e-37
whv3_18016_a04f 2012 5' Shoot grown under cold condition for 3days 661bp Contig14131       predictedprotein[Hordeumvulgaresubsp.vulgare] 389 3.66107e-106
whv3_19016_a04f 2012 5' Shoot grown under cold condition for 3days 740bp Contig6300       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.56835e-98
whv3_3016_a04f 2012 5' Shoot grown under cold condition for 3days 737bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 204 2.74506e-50
whv3_5016_a04f 2012 5' Shoot grown under cold condition for 3days 688bp       LEAD-11dehydrin[Triticumaestivum] 267 2.95182e-69
whv3_6016_a04f 2012 5' Shoot grown under cold condition for 3days 690bp Contig7252       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.05934e-98
whv3_7016_a04f 2012 5' Shoot grown under cold condition for 3days 689bp Contig6300       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.05934e-98
whv3_8016_a04f 2012 5' Shoot grown under cold condition for 3days 375bp Contig3930       predictedprotein[Hordeumvulgaresubsp.vulgare] 146 2.01119e-33
whv3_1016_a04r 2012 3' Shoot grown under cold condition for 3days 645bp Contig2671       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 269 6.78739e-70
whv3_13016_a04r 2012 3' Shoot grown under cold condition for 3days 727bp       GTP-bindingprotein[Triticumaestivum] 313 4.07935e-83
whv3_15016_a04r 2012 3' Shoot grown under cold condition for 3days 728bp Contig6777       PREDICTED:delta-1-pyrroline-5-carboxylatesynthase-like[Brachypodiumdistachyon] 309 5.89057e-82
whv3_16016_a04r 2012 3' Shoot grown under cold condition for 3days 687bp Contig21054       heatshockprotein70KDa,partial[Triticumaestivum] 253 3.37732e-65
whv3_18016_a04r 2012 3' Shoot grown under cold condition for 3days 501bp Contig1082       predictedprotein[Hordeumvulgaresubsp.vulgare] 160 2.23763e-37
whv3_19016_a04r 2012 3' Shoot grown under cold condition for 3days 644bp Contig6300       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.00409e-90
whv3_3016_a04r 2012 3' Shoot grown under cold condition for 3days 608bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 196 4.77539e-48
whv3_5016_a04r 2012 3' Shoot grown under cold condition for 3days 586bp       LEAD-11dehydrin[Triticumaestivum] 242 5.23732e-62
whv3_6016_a04r 2012 3' Shoot grown under cold condition for 3days 685bp Contig7252       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.15272e-89
whv3_7016_a04r 2012 3' Shoot grown under cold condition for 3days 663bp Contig6300       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.24792e-94
whv3_8016_a04r 2012 3' Shoot grown under cold condition for 3days 344bp Contig3930       predictedprotein[Hordeumvulgaresubsp.vulgare] 159 3.01377e-37
whv3_1031_a05f 2012 5' Shoot grown under cold condition for 3days 335bp Contig32703       metallothioneinetype2[Hordeumvulgaresubsp.vulgare] 156 1.90874e-36
whv3_11031_a05f 2012 5' Shoot grown under cold condition for 3days 723bp Contig6540       Mitochondrialprotein,putative[Medicagotruncatula] 138 2.92792e-40
whv3_13031_a05f 2012 5' Shoot grown under cold condition for 3days 610bp Contig1979       cyclophilinA-1[Triticumaestivum] 361 8.58254e-98
whv3_16031_a05f 2012 5' Shoot grown under cold condition for 3days 663bp Contig19884       Unknown(proteinforMGC:35458)[Homosapiens] 404 1.43634e-110
whv3_2031_a05f 2012 5' Shoot grown under cold condition for 3days 646bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 207 1.83377e-51
whv3_3031_a05f 2012 5' Shoot grown under cold condition for 3days 532bp Contig33533       predictedprotein[Hordeumvulgaresubsp.vulgare] 305 3.83504e-81
whv3_4031_a05f 2012 5' Shoot grown under cold condition for 3days 694bp Contig890       RecName:Full=UTP--glucose-1-phosphateuridylyltransferase;AltName:Full=UDP-glucosepyrophosphorylase;Short=UDPGP;Short=UGPase 409 4.96627e-112
whv3_5031_a05f 2012 5' Shoot grown under cold condition for 3days 590bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 218 1.09241e-54
whv3_8031_a05f 2012 5' Shoot grown under cold condition for 3days 568bp Contig7237       chopperchaperone[Hordeumvulgaresubsp.vulgare] 188 8.23939e-46
whv3_11031_a05r 2012 3' Shoot grown under cold condition for 3days 695bp Contig6540       Mitochondrialprotein,putative[Medicagotruncatula] 232 6.37038e-59
whv3_13031_a05r 2012 3' Shoot grown under cold condition for 3days 577bp Contig1979       cyclophilinA-1[Triticumaestivum] 274 1.18252e-71
whv3_16031_a05r 2012 3' Shoot grown under cold condition for 3days 637bp Contig13359       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 262 8.03999e-87
whv3_2031_a05r 2012 3' Shoot grown under cold condition for 3days 610bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 224 1.63748e-56
whv3_3031_a05r 2012 3' Shoot grown under cold condition for 3days 676bp Contig27194       predictedprotein[Hordeumvulgaresubsp.vulgare] 386 4.21788e-105
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