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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 4490
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whv3_10015_a01r 2012 3' Shoot grown under cold condition for 3days 506bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 155 4.32819e-36
whv3_1015_a01r 2012 3' Shoot grown under cold condition for 3days 648bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 322 5.23754e-86
whv3_12015_a01r 2012 3' Shoot grown under cold condition for 3days 574bp Contig6477       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 292 4.12375e-77
whv3_14015_a01r 2012 3' Shoot grown under cold condition for 3days 550bp       BLT14.1protein[Hordeumvulgaresubsp.vulgare] 149 4.96955e-34
whv3_15015_a01r 2012 3' Shoot grown under cold condition for 3days 622bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 295 6.12383e-78
whv3_16015_a01r 2012 3' Shoot grown under cold condition for 3days 501bp Contig4376       cold-responsiveprotein[Triticumaestivum] 201 6.70614e-50
whv3_17015_a01r 2012 3' Shoot grown under cold condition for 3days 443bp Contig6278       proline-richprotein[Triticumaestivum] 148 9.04734e-34
whv3_2015_a01r 2012 3' Shoot grown under cold condition for 3days 349bp Contig1979       cyclophilinA-1[Triticumaestivum] 109 2.71759e-22
whv3_4015_a01r 2012 3' Shoot grown under cold condition for 3days 554bp Contig5861       predictedprotein[Hordeumvulgaresubsp.vulgare] 300 1.38802e-79
whv3_10015_a02r 2012 3' Shoot grown under cold condition for 3days 678bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 344 1.07759e-92
whv3_1015_a02r 2012 3' Shoot grown under cold condition for 3days 195bp Contig7725       PREDICTED:ribulose-phosphate3-epimerase,chloroplastic-like[Brachypodiumdistachyon] 131 8.71048e-29
whv3_13015_a02r 2012 3' Shoot grown under cold condition for 3days 608bp Contig6518       phosphoethanolaminemethyltransferase[Triticumaestivum] 266 2.87704e-69
whv3_14015_a02r 2012 3' Shoot grown under cold condition for 3days 678bp Contig11259       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.42411e-94
whv3_15015_a02r 2012 3' Shoot grown under cold condition for 3days 236bp Contig13629       predictedprotein[Hordeumvulgaresubsp.vulgare] 79 2.99287e-13
whv3_16015_a02r 2012 3' Shoot grown under cold condition for 3days 660bp Contig1662       predictedprotein[Hordeumvulgaresubsp.vulgare] 282 6.22889e-74
whv3_20015_a02r 2012 3' Shoot grown under cold condition for 3days 587bp Contig14903       predictedprotein[Hordeumvulgaresubsp.vulgare] 249 3.33423e-64
whv3_2015_a02r 2012 3' Shoot grown under cold condition for 3days 288bp Contig26888       PREDICTED:glyceraldehyde-3-phosphatedehydrogenase,cytosolic-like[Brachypodiumdistachyon] 67 1.55922e-09
whv3_4015_a02r 2012 3' Shoot grown under cold condition for 3days 702bp Contig6883       predictedprotein[Hordeumvulgaresubsp.vulgare] 370 1.99867e-100
whv3_5015_a02r 2012 3' Shoot grown under cold condition for 3days 579bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 246 2.73154e-63
whv3_9015_a02r 2012 3' Shoot grown under cold condition for 3days 317bp Contig26249       RecName:Full=GlutathioneS-transferase2;AltName:Full=GSTclass-phi 137 1.60066e-30
whv3_10016_a03r 2012 3' Shoot grown under cold condition for 3days 614bp Contig35067       serinehydroxymethyltransferase[Triticummonococcum] 266 3.86805e-69
whv3_13016_a03r 2012 3' Shoot grown under cold condition for 3days 533bp Contig9536       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 297 1.04438e-78
whv3_14016_a03r 2012 3' Shoot grown under cold condition for 3days 41bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 34 5.77478
whv3_15016_a03r 2012 3' Shoot grown under cold condition for 3days 548bp Contig11259       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 244 1.48247e-62
whv3_17016_a03r 2012 3' Shoot grown under cold condition for 3days 614bp Contig3164       predictedprotein[Hordeumvulgaresubsp.vulgare] 240 1.74032e-61
whv3_18016_a03r 2012 3' Shoot grown under cold condition for 3days 739bp Contig425       predictedprotein[Hordeumvulgaresubsp.vulgare] 370 3.81245e-100
whv3_19016_a03r 2012 3' Shoot grown under cold condition for 3days 153bp            
whv3_4016_a03r 2012 3' Shoot grown under cold condition for 3days 505bp       PREDICTED:uncharacterizedproteinLOC100844872[Brachypodiumdistachyon] 108 5.91588e-22
whv3_5016_a03r 2012 3' Shoot grown under cold condition for 3days 353bp Contig19262       chlorophylla/b-bindingproteinWCABprecursor[Triticumaestivum] 223 1.67998e-56
whv3_7016_a03r 2012 3' Shoot grown under cold condition for 3days 548bp Contig7371       RecName:Full=Phosphoglyceratekinase,chloroplastic;Flags:Precursor 287 1.1692e-75
whv3_8016_a03r 2012 3' Shoot grown under cold condition for 3days 677bp Contig8091       translationinitiationfactor[Triticumaestivum] 232 7.7945e-59
whv3_1016_a04r 2012 3' Shoot grown under cold condition for 3days 645bp Contig2671       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 269 6.78739e-70
whv3_13016_a04r 2012 3' Shoot grown under cold condition for 3days 727bp       GTP-bindingprotein[Triticumaestivum] 313 4.07935e-83
whv3_15016_a04r 2012 3' Shoot grown under cold condition for 3days 728bp Contig6777       PREDICTED:delta-1-pyrroline-5-carboxylatesynthase-like[Brachypodiumdistachyon] 309 5.89057e-82
whv3_16016_a04r 2012 3' Shoot grown under cold condition for 3days 687bp Contig21054       heatshockprotein70KDa,partial[Triticumaestivum] 253 3.37732e-65
whv3_18016_a04r 2012 3' Shoot grown under cold condition for 3days 501bp Contig1082       predictedprotein[Hordeumvulgaresubsp.vulgare] 160 2.23763e-37
whv3_19016_a04r 2012 3' Shoot grown under cold condition for 3days 644bp Contig6300       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.00409e-90
whv3_3016_a04r 2012 3' Shoot grown under cold condition for 3days 608bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 196 4.77539e-48
whv3_5016_a04r 2012 3' Shoot grown under cold condition for 3days 586bp       LEAD-11dehydrin[Triticumaestivum] 242 5.23732e-62
whv3_6016_a04r 2012 3' Shoot grown under cold condition for 3days 685bp Contig7252       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.15272e-89
whv3_7016_a04r 2012 3' Shoot grown under cold condition for 3days 663bp Contig6300       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.24792e-94
whv3_8016_a04r 2012 3' Shoot grown under cold condition for 3days 344bp Contig3930       predictedprotein[Hordeumvulgaresubsp.vulgare] 159 3.01377e-37
whv3_11031_a05r 2012 3' Shoot grown under cold condition for 3days 695bp Contig6540       Mitochondrialprotein,putative[Medicagotruncatula] 232 6.37038e-59
whv3_13031_a05r 2012 3' Shoot grown under cold condition for 3days 577bp Contig1979       cyclophilinA-1[Triticumaestivum] 274 1.18252e-71
whv3_16031_a05r 2012 3' Shoot grown under cold condition for 3days 637bp Contig13359       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 262 8.03999e-87
whv3_2031_a05r 2012 3' Shoot grown under cold condition for 3days 610bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 224 1.63748e-56
whv3_3031_a05r 2012 3' Shoot grown under cold condition for 3days 676bp Contig27194       predictedprotein[Hordeumvulgaresubsp.vulgare] 386 4.21788e-105
whv3_4031_a05r 2012 3' Shoot grown under cold condition for 3days 733bp Contig890       RecName:Full=UTP--glucose-1-phosphateuridylyltransferase;AltName:Full=UDP-glucosepyrophosphorylase;Short=UDPGP;Short=UGPase 358 1.47169e-96
whv3_5031_a05r 2012 3' Shoot grown under cold condition for 3days 574bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 237 2.05611e-60
whv3_8031_a05r 2012 3' Shoot grown under cold condition for 3days 516bp Contig7237       chopperchaperone[Hordeumvulgaresubsp.vulgare] 188 6.11865e-46
whv3_10031_a06r 2012 3' Shoot grown under cold condition for 3days 589bp Contig15635       predictedprotein[Hordeumvulgaresubsp.vulgare] 262 5.05097e-68
whv3_1031_a06r 2012 3' Shoot grown under cold condition for 3days 344bp       RecName:Full=Saltstress-inducedhydrophobicpeptideESI3 81 7.98634e-14
whv3_11031_a06r 2012 3' Shoot grown under cold condition for 3days 504bp Contig12395       PREDICTED:thiazolebiosyntheticenzyme1-2,chloroplastic-like[Brachypodiumdistachyon] 167 1.8305e-39
whv3_12031_a06r 2012 3' Shoot grown under cold condition for 3days 561bp Contig11275       cyclophilinA-2[Triticumaestivum] 249 4.97708e-64
whv3_13031_a06r 2012 3' Shoot grown under cold condition for 3days 652bp       hypotheticalproteinARALYDRAFT_893970[Arabidopsislyratasubsp.lyrata] 41 0.233058
whv3_15031_a06r 2012 3' Shoot grown under cold condition for 3days 537bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 235 4.97984e-60
whv3_16031_a06r 2012 3' Shoot grown under cold condition for 3days 689bp Contig6689       predictedprotein[Hordeumvulgaresubsp.vulgare] 261 1.63732e-67
whv3_18031_a06r 2012 3' Shoot grown under cold condition for 3days 687bp       hypotheticalprotein[CryptosporidiummurisRN66] 40 0.454236
whv3_20031_a06r 2012 3' Shoot grown under cold condition for 3days 727bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 361 1.30621e-97
whv3_2031_a06r 2012 3' Shoot grown under cold condition for 3days 687bp Contig2173       predictedprotein[Hordeumvulgaresubsp.vulgare] 338 1.36167e-90
whv3_4031_a06r 2012 3' Shoot grown under cold condition for 3days 519bp Contig6990       BLT14.1protein[Hordeumvulgaresubsp.vulgare] 149 4.21402e-34
whv3_5031_a06r 2012 3' Shoot grown under cold condition for 3days 655bp Contig9057       alphatubulin-2A[Triticumaestivum] 376 3.13179e-102
whv3_7031_a06r 2012 3' Shoot grown under cold condition for 3days 456bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 125 4.7052e-27
whv3_8031_a06r 2012 3' Shoot grown under cold condition for 3days 650bp Contig6691       predictedprotein[Hordeumvulgaresubsp.vulgare] 205 1.09489e-95
whv3_10032_a07r 2012 3' Shoot grown under cold condition for 3days 269bp       PREDICTED:proline-,glutamicacid-andleucine-richprotein1-like[Brachypodiumdistachyon] 78 8.70163e-13
whv3_11032_a07r 2012 3' Shoot grown under cold condition for 3days 611bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 291 1.4455e-76
whv3_12032_a07r 2012 3' Shoot grown under cold condition for 3days 612bp Contig11867       PREDICTED:uncharacterizedproteinLOC100835375[Brachypodiumdistachyon] 241 1.0057e-61
whv3_13032_a07r 2012 3' Shoot grown under cold condition for 3days 548bp Contig8817       Chaint,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 214 1.64287e-53
whv3_14032_a07r 2012 3' Shoot grown under cold condition for 3days 526bp Contig12694       PREDICTED:cytochromeP450704C1-like[Brachypodiumdistachyon] 262 4.65118e-68
whv3_15032_a07r 2012 3' Shoot grown under cold condition for 3days 743bp Contig18791       hypotheticalproteinOsJ_17081[OryzasativaJaponicaGroup] 273 4.90099e-71
whv3_17032_a07r 2012 3' Shoot grown under cold condition for 3days 653bp Contig6300       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 3.79101e-92
whv3_20032_a07r 2012 3' Shoot grown under cold condition for 3days 642bp Contig7108       glycinedecarboxylasePsubunit[xTritordeumsp.] 289 4.79224e-76
whv3_2032_a07r 2012 3' Shoot grown under cold condition for 3days 714bp Contig17033       PREDICTED:elongationfactorG,chloroplastic-like[Brachypodiumdistachyon] 355 8.91517e-96
whv3_3032_a07r 2012 3' Shoot grown under cold condition for 3days 641bp Contig6719       cold-responsiveLEA/RAB-relatedCORprotein[Triticumaestivum] 311 8.90271e-83
whv3_4032_a07r 2012 3' Shoot grown under cold condition for 3days 513bp Contig6705       BLT14.1protein[Hordeumvulgaresubsp.vulgare] 131 8.65989e-29
whv3_7032_a07r 2012 3' Shoot grown under cold condition for 3days 464bp       PREDICTED:6-phosphogluconatedehydrogenase,decarboxylating-likeisoform1[Brachypodiumdistachyon] 185 3.91756e-45
whv3_8032_a07r 2012 3' Shoot grown under cold condition for 3days 185bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 89 2.94443e-16
whv3_1032_a08r 2012 3' Shoot grown under cold condition for 3days 96bp       chlorophylla/bbindingprotein[Lonicerajaponica] 60 2.42509e-07
whv3_12032_a08r 2012 3' Shoot grown under cold condition for 3days 582bp Contig6535       PREDICTED:chlorophylla-bbindingprotein3C,chloroplastic-likeisoform1[Brachypodiumdistachyon] 298 7.91079e-79
whv3_15032_a08r 2012 3' Shoot grown under cold condition for 3days 536bp Contig2642       predictedprotein[Hordeumvulgaresubsp.vulgare] 264 1.00108e-68
whv3_18032_a08r 2012 3' Shoot grown under cold condition for 3days 285bp       conservedhypotheticalprotein[BryantellaformatexigensDSM14469] 35 8.29898
whv3_2032_a08r 2012 3' Shoot grown under cold condition for 3days 666bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 314 1.97782e-83
whv3_4032_a08r 2012 3' Shoot grown under cold condition for 3days 324bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 99 3.65758e-19
whv3_5032_a08r 2012 3' Shoot grown under cold condition for 3days 169bp Contig7395       coldacclimationproteinWCOR410c[Triticumaestivum] 98 1.05942e-18
whv3_8032_a08r 2012 3' Shoot grown under cold condition for 3days 492bp       PREDICTED:U6snRNA-associatedSm-likeproteinLSm7-like[Brachypodiumdistachyon] 193 1.42435e-47
whv3_9032_a08r 2012 3' Shoot grown under cold condition for 3days 693bp Contig8235       predictedprotein[Hordeumvulgaresubsp.vulgare] 273 4.20846e-71
whv3_10047_a09r 2012 3' Shoot grown under cold condition for 3days 666bp Contig6709       predictedprotein[Hordeumvulgaresubsp.vulgare] 348 9.57342e-94
whv3_14047_a09r 2012 3' Shoot grown under cold condition for 3days 594bp       WCOR719[Triticumaestivum] 277 1.18018e-72
whv3_17047_a09r 2012 3' Shoot grown under cold condition for 3days 498bp Contig6278       proline-richprotein[Triticumaestivum] 197 1.65947e-48
whv3_19047_a09r 2012 3' Shoot grown under cold condition for 3days 453bp Contig6914       PREDICTED:chlorophylla-bbindingprotein2,chloroplastic-likeisoform6[Brachypodiumdistachyon] 279 3.35456e-73
whv3_20047_a09r 2012 3' Shoot grown under cold condition for 3days 550bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 179 3.50223e-43
whv3_2047_a09r 2012 3' Shoot grown under cold condition for 3days 572bp Contig17675       predictedprotein[Hordeumvulgaresubsp.vulgare] 202 5.61233e-50
whv3_3047_a09r 2012 3' Shoot grown under cold condition for 3days 740bp Contig2335       RecName:Full=Beta-amylase;AltName:Full=1,4-alpha-D-glucanmaltohydrolase 393 2.46543e-107
whv3_4047_a09r 2012 3' Shoot grown under cold condition for 3days 642bp Contig6477       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 9.8203e-90
whv3_7047_a09r 2012 3' Shoot grown under cold condition for 3days 621bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 291 1.50835e-76
whv3_8047_a09r 2012 3' Shoot grown under cold condition for 3days 555bp       BLT14.1protein[Hordeumvulgaresubsp.vulgare] 149 5.26773e-34
whv3_9047_a09r 2012 3' Shoot grown under cold condition for 3days 102bp       elongationfactor1-alpha[Secalecereale] 67 1.50996e-09
whv3_10047_a10r 2012 3' Shoot grown under cold condition for 3days 120bp            
whv3_1047_a10r 2012 3' Shoot grown under cold condition for 3days 736bp Contig10532       Os06g0598900[OryzasativaJaponicaGroup] 286 4.20565e-75
whv3_11047_a10r 2012 3' Shoot grown under cold condition for 3days 539bp Contig4316       predictedprotein[Hordeumvulgaresubsp.vulgare] 240 2.06481e-61
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