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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 6033
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whsh_9001_a01r 2012 3' - 290bp       xylulokinase[SinorhizobiummelilotiCCNWSX0020] 38 1.00937
whsh_13001_a01f 2012 5' - 235bp Contig2932            
whsh_15001_a01f 2012 5' - 117bp            
whsh_17001_a01f 2012 5' - 412bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 113 2.62717e-42
whsh_18001_a01f 2012 5' - 143bp       P450[Triticumaestivum] 44 0.0178713
whsh_3001_a01f 2012 5' - 284bp Contig34291       predictedprotein[Hordeumvulgaresubsp.vulgare] 103 3.24085e-20
whsh_4001_a01f 2012 5' - 167bp Contig6445            
whsh_5001_a01f 2012 5' - 214bp Contig20689       RecName:Full=PhotosystemIreactioncentersubunitXI,chloroplastic;Short=PSI-L;AltName:Full=PSIsubunitV;Flags:Precursor 58 9.18749e-07
whsh_6001_a01f 2012 5' - 309bp Contig5733       PREDICTED:N-alpha-acetyltransferase50-likeisoform2[Brachypodiumdistachyon] 70 2.34515e-10
whsh_7001_a01f 2012 5' - 126bp Contig34904            
whsh_9001_a01f 2012 5' - 312bp            
whsh_10001_a01r 2012 3' - 301bp Contig5734       xylulokinase[SinorhizobiummelilotiCCNWSX0020] 38 0.994843
whsh_13001_a01r 2012 3' - 220bp Contig2932            
whsh_15001_a01r 2012 3' - 107bp Contig6924            
whsh_17001_a01r 2012 3' - 589bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 275 7.22627e-83
whsh_18001_a01r 2012 3' - 128bp       P450[Triticumaestivum] 44 0.0181489
whsh_3001_a01r 2012 3' - 261bp Contig34291       predictedprotein[Hordeumvulgaresubsp.vulgare] 111 1.2242e-22
whsh_4001_a01r 2012 3' - 154bp Contig6445            
whsh_5001_a01r 2012 3' - 159bp Contig1582       RecName:Full=PhotosystemIreactioncentersubunitXI,chloroplastic;Short=PSI-L;AltName:Full=PSIsubunitV;Flags:Precursor 58 9.36164e-07
whsh_6001_a01r 2012 3' - 290bp Contig5733       PREDICTED:N-alpha-acetyltransferase50-likeisoform2[Brachypodiumdistachyon] 83 2.09493e-14
whsh_7001_a01r 2012 3' - 148bp Contig34904            
whsh_8001_a01r 2012 3' - 148bp            
whsh_11017_a02f 2012 5' - 448bp Contig21192       unknown[Zeamays] 88 1.10633e-15
whsh_15017_a02f 2012 5' - 214bp       ethanolamineutilizationproteinEutH[EscherichiacoliCUMT8] 133 2.93502e-29
whsh_16017_a02f 2012 5' - 36bp            
whsh_4017_a02f 2012 5' - 197bp       xylanaseinhibitorprecursor[Triticumaestivum] 72 4.80182e-11
whsh_10017_a02r 2012 3' - 87bp Contig11974            
whsh_11017_a02r 2012 3' - 431bp Contig21192       unknown[Zeamays] 99 3.63677e-19
whsh_4017_a02r 2012 3' - 171bp       xylanaseinhibitorprecursor[Triticumaestivum] 72 4.75144e-11
whsh_5017_a02r 2012 3' - 35bp            
whsh_9033_a03r 2012 3' - 85bp            
whsh_10033_a03f 2012 5' - 580bp Contig19969       putativerubiscosmallsubunit[Triticumdurum] 245 7.94756e-63
whsh_1033_a03f 2012 5' - 137bp            
whsh_18033_a03f 2012 5' - 324bp Contig7735       predictedprotein[Hordeumvulgaresubsp.vulgare] 61 1.44164e-07
whsh_3033_a03f 2012 5' - 168bp Contig33843            
whsh_5033_a03f 2012 5' - 173bp            
whsh_9033_a03f 2012 5' - 102bp Contig1095            
whsh_10033_a03r 2012 3' - 452bp Contig19969       putativerubiscosmallsubunit[Triticumdurum] 240 1.3222e-61
whsh_1033_a03r 2012 3' - 126bp            
whsh_13033_a03r 2012 3' - 55bp            
whsh_18033_a03r 2012 3' - 310bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 69 5.20524e-10
whsh_2033_a03r 2012 3' - 150bp Contig5893       chlorophylla/bbindingprotein,partial[Loliumperenne] 94 1.19365e-17
whsh_3033_a03r 2012 3' - 137bp Contig33843            
whsh_5033_a03r 2012 3' - 146bp Contig5531            
whsh_6033_a03r 2012 3' - 111bp       xylanaseinhibitorprecursor[Triticumaestivum] 50 0.000196871
whsh_9049_a04r 2012 3' - 251bp Contig5743       PREDICTED:uncharacterizedproteinLOC100830508[Brachypodiumdistachyon] 64 1.67054e-08
whsh_10049_a04f 2012 5' - 235bp Contig6435       hypotheticalproteinLOAG_04717[Loaloa] 37 2.23228
whsh_12049_a04f 2012 5' - 552bp Contig18019       predictedprotein[Hordeumvulgaresubsp.vulgare] 254 1.11882e-65
whsh_13049_a04f 2012 5' - 550bp Contig32607       PhotosystemII10kDapolypeptide,chloroplast[Salmosalar] 245 5.1971e-63
whsh_15049_a04f 2012 5' - 345bp       phycobilisomeprotein[Cyanothecesp.PCC7424] 36 5.00639
whsh_17049_a04f 2012 5' - 528bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Triticumaestivum] 334 9.63106e-90
whsh_18049_a04f 2012 5' - 35bp            
whsh_2049_a04f 2012 5' - 641bp Contig25312       predictedprotein[Hordeumvulgaresubsp.vulgare] 338 1.16004e-90
whsh_3049_a04f 2012 5' - 197bp       traXprotein[EscherichiacoliDEC9C] 69 4.06498e-10
whsh_4049_a04f 2012 5' - 233bp       hypotheticalproteinHMPREF0986_04844[Escherichiacoli4_1_47FAA] 155 7.34549e-36
whsh_8049_a04f 2012 5' - 374bp Contig35257       predictedprotein[Hordeumvulgaresubsp.vulgare] 145 5.85168e-33
whsh_10049_a04r 2012 3' - 227bp Contig6435       hypotheticalproteinLOAG_04717[Loaloa] 37 2.24742
whsh_11049_a04r 2012 3' - 136bp            
whsh_12049_a04r 2012 3' - 427bp Contig18019       predictedprotein[Hordeumvulgaresubsp.vulgare] 217 9.24057e-55
whsh_13049_a04r 2012 3' - 527bp Contig32607       RecName:Full=PhotosystemII10kDapolypeptide,chloroplastic;Flags:Precursor 242 2.92008e-62
whsh_15049_a04r 2012 3' - 405bp       phycobilisomeprotein[Cyanothecesp.PCC7424] 36 4.94341
whsh_16049_a04r 2012 3' - 397bp Contig5822       RecName:Full=Chlorophylla-bbindingproteinofLHCIItypeIII,chloroplastic;Short=CAB;Flags:Precursor 237 1.47911e-60
whsh_17049_a04r 2012 3' - 528bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Triticumaestivum] 341 7.87871e-92
whsh_2049_a04r 2012 3' - 646bp Contig25312       predictedprotein[Hordeumvulgaresubsp.vulgare] 302 4.2415e-80
whsh_8049_a04r 2012 3' - 329bp Contig35257       predictedprotein[Hordeumvulgaresubsp.vulgare] 152 4.73702e-35
whsh_9065_a05r 2012 3' - 123bp Contig7740            
whsh_10065_a05f 2012 5' - 130bp Contig7547       morphogenesisprotein[Leymussecalinus] 88 8.36582e-16
whsh_11065_a05f 2012 5' - 223bp       hypotheticalprotein[Parameciumtetraureliastraind4-2] 36 2.94511
whsh_12065_a05f 2012 5' - 277bp Contig27810       Celldivisioncycleprotein-likeprotein[Medicagotruncatula] 36 4.91766
whsh_14065_a05f 2012 5' - 339bp Contig5805       predictedprotein[Hordeumvulgaresubsp.vulgare] 57 2.04272e-06
whsh_16065_a05f 2012 5' - 247bp Contig1500       PREDICTED:chlorophylla-bbindingprotein2,chloroplastic-likeisoform6[Brachypodiumdistachyon] 62 4.89417e-08
whsh_2065_a05f 2012 5' - 240bp Contig5889            
whsh_5066_a05f 2012 5' - 428bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 125 8.11738e-27
whsh_6066_a05f 2012 5' - 402bp Contig17326       NADHdehydrogenase49KDasubunit[Acoruscalamus] 145 7.61839e-33
whsh_9065_a05f 2012 5' - 158bp Contig7740            
whsh_11065_a05r 2012 3' - 177bp       hypotheticalprotein[Parameciumtetraureliastraind4-2] 36 2.86167
whsh_12065_a05r 2012 3' - 257bp Contig27810       PREDICTED:serine/threonine-proteinkinaseHT1-like[Brachypodiumdistachyon] 36 3.84548
whsh_14065_a05r 2012 3' - 346bp Contig5805       predictedprotein[Hordeumvulgaresubsp.vulgare] 79 3.02322e-13
whsh_16065_a05r 2012 3' - 222bp Contig1500       chloroplastchlorophylla/bbindingprotein[Brassicanapus] 77 1.50556e-12
whsh_2065_a05r 2012 3' - 191bp Contig5889            
whsh_5065_a05r 2012 3' - 403bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 126 2.1382e-27
whsh_9081_a06r 2012 3' - 236bp       GI18310[Drosophilamojavensis] 36 4.95613
whsh_11081_a06f 2012 5' - 102bp            
whsh_13081_a06f 2012 5' - 219bp Contig6300       PREDICTED:hypotheticalproteinLOC100602241[Nomascusleucogenys] 41 0.119971
whsh_15081_a06f 2012 5' - 544bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 218 6.53658e-55
whsh_18081_a06f 2012 5' - 336bp Contig5735       GF25205[Drosophilaananassae] 36 2.86791
whsh_2081_a06f 2012 5' - 214bp            
whsh_6082_a06f 2012 5' - 152bp Contig6830       PREDICTED:hypotheticalproteinLOC100602241[Nomascusleucogenys] 41 0.119546
whsh_7081_a06f 2012 5' - 335bp Contig7038       unnamedproteinproduct[ShewanellasediminisHAW-EB3] 35 8.37607
whsh_9081_a06f 2012 5' - 274bp Contig33793       GI18310[Drosophilamojavensis] 37 1.69018
whsh_10081_a06r 2012 3' - 88bp            
whsh_1081_a06r 2012 3' - 67bp Contig35125            
whsh_11081_a06r 2012 3' - 79bp            
whsh_13081_a06r 2012 3' - 206bp Contig6300       PREDICTED:hypotheticalproteinLOC100602241[Nomascusleucogenys] 41 0.117385
whsh_15081_a06r 2012 3' - 555bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 237 1.44306e-60
whsh_16081_a06r 2012 3' - 65bp Contig6477            
whsh_18081_a06r 2012 3' - 255bp Contig5735            
whsh_2081_a06r 2012 3' - 203bp       hypotheticalproteinSORBIDRAFT_02g011240[Sorghumbicolor] 49 0.000564821
whsh_6081_a06r 2012 3' - 120bp Contig6477       unnamedproteinproduct[TrypanosomacongolenseIL3000] 35 6.49451
whsh_7081_a06r 2012 3' - 328bp Contig7038       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 42 0.06904
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