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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 3354
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whsh_9001_a01r 2012 3' - 290bp       xylulokinase[SinorhizobiummelilotiCCNWSX0020] 38 1.00937
whsh_10001_a01r 2012 3' - 301bp Contig5734       xylulokinase[SinorhizobiummelilotiCCNWSX0020] 38 0.994843
whsh_13001_a01r 2012 3' - 220bp Contig2932            
whsh_15001_a01r 2012 3' - 107bp Contig6924            
whsh_17001_a01r 2012 3' - 589bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 275 7.22627e-83
whsh_18001_a01r 2012 3' - 128bp       P450[Triticumaestivum] 44 0.0181489
whsh_3001_a01r 2012 3' - 261bp Contig34291       predictedprotein[Hordeumvulgaresubsp.vulgare] 111 1.2242e-22
whsh_4001_a01r 2012 3' - 154bp Contig6445            
whsh_5001_a01r 2012 3' - 159bp Contig1582       RecName:Full=PhotosystemIreactioncentersubunitXI,chloroplastic;Short=PSI-L;AltName:Full=PSIsubunitV;Flags:Precursor 58 9.36164e-07
whsh_6001_a01r 2012 3' - 290bp Contig5733       PREDICTED:N-alpha-acetyltransferase50-likeisoform2[Brachypodiumdistachyon] 83 2.09493e-14
whsh_7001_a01r 2012 3' - 148bp Contig34904            
whsh_8001_a01r 2012 3' - 148bp            
whsh_10017_a02r 2012 3' - 87bp Contig11974            
whsh_11017_a02r 2012 3' - 431bp Contig21192       unknown[Zeamays] 99 3.63677e-19
whsh_4017_a02r 2012 3' - 171bp       xylanaseinhibitorprecursor[Triticumaestivum] 72 4.75144e-11
whsh_5017_a02r 2012 3' - 35bp            
whsh_9033_a03r 2012 3' - 85bp            
whsh_10033_a03r 2012 3' - 452bp Contig19969       putativerubiscosmallsubunit[Triticumdurum] 240 1.3222e-61
whsh_1033_a03r 2012 3' - 126bp            
whsh_13033_a03r 2012 3' - 55bp            
whsh_18033_a03r 2012 3' - 310bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 69 5.20524e-10
whsh_2033_a03r 2012 3' - 150bp Contig5893       chlorophylla/bbindingprotein,partial[Loliumperenne] 94 1.19365e-17
whsh_3033_a03r 2012 3' - 137bp Contig33843            
whsh_5033_a03r 2012 3' - 146bp Contig5531            
whsh_6033_a03r 2012 3' - 111bp       xylanaseinhibitorprecursor[Triticumaestivum] 50 0.000196871
whsh_9049_a04r 2012 3' - 251bp Contig5743       PREDICTED:uncharacterizedproteinLOC100830508[Brachypodiumdistachyon] 64 1.67054e-08
whsh_10049_a04r 2012 3' - 227bp Contig6435       hypotheticalproteinLOAG_04717[Loaloa] 37 2.24742
whsh_11049_a04r 2012 3' - 136bp            
whsh_12049_a04r 2012 3' - 427bp Contig18019       predictedprotein[Hordeumvulgaresubsp.vulgare] 217 9.24057e-55
whsh_13049_a04r 2012 3' - 527bp Contig32607       RecName:Full=PhotosystemII10kDapolypeptide,chloroplastic;Flags:Precursor 242 2.92008e-62
whsh_15049_a04r 2012 3' - 405bp       phycobilisomeprotein[Cyanothecesp.PCC7424] 36 4.94341
whsh_16049_a04r 2012 3' - 397bp Contig5822       RecName:Full=Chlorophylla-bbindingproteinofLHCIItypeIII,chloroplastic;Short=CAB;Flags:Precursor 237 1.47911e-60
whsh_17049_a04r 2012 3' - 528bp Contig17539       ribulose-1,5-bisphosphatecarboxylase/oxygenaselargesubunit[Triticumaestivum] 341 7.87871e-92
whsh_2049_a04r 2012 3' - 646bp Contig25312       predictedprotein[Hordeumvulgaresubsp.vulgare] 302 4.2415e-80
whsh_8049_a04r 2012 3' - 329bp Contig35257       predictedprotein[Hordeumvulgaresubsp.vulgare] 152 4.73702e-35
whsh_9065_a05r 2012 3' - 123bp Contig7740            
whsh_11065_a05r 2012 3' - 177bp       hypotheticalprotein[Parameciumtetraureliastraind4-2] 36 2.86167
whsh_12065_a05r 2012 3' - 257bp Contig27810       PREDICTED:serine/threonine-proteinkinaseHT1-like[Brachypodiumdistachyon] 36 3.84548
whsh_14065_a05r 2012 3' - 346bp Contig5805       predictedprotein[Hordeumvulgaresubsp.vulgare] 79 3.02322e-13
whsh_16065_a05r 2012 3' - 222bp Contig1500       chloroplastchlorophylla/bbindingprotein[Brassicanapus] 77 1.50556e-12
whsh_2065_a05r 2012 3' - 191bp Contig5889            
whsh_5065_a05r 2012 3' - 403bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 126 2.1382e-27
whsh_9081_a06r 2012 3' - 236bp       GI18310[Drosophilamojavensis] 36 4.95613
whsh_10081_a06r 2012 3' - 88bp            
whsh_1081_a06r 2012 3' - 67bp Contig35125            
whsh_11081_a06r 2012 3' - 79bp            
whsh_13081_a06r 2012 3' - 206bp Contig6300       PREDICTED:hypotheticalproteinLOC100602241[Nomascusleucogenys] 41 0.117385
whsh_15081_a06r 2012 3' - 555bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 237 1.44306e-60
whsh_16081_a06r 2012 3' - 65bp Contig6477            
whsh_18081_a06r 2012 3' - 255bp Contig5735            
whsh_2081_a06r 2012 3' - 203bp       hypotheticalproteinSORBIDRAFT_02g011240[Sorghumbicolor] 49 0.000564821
whsh_6081_a06r 2012 3' - 120bp Contig6477       unnamedproteinproduct[TrypanosomacongolenseIL3000] 35 6.49451
whsh_7081_a06r 2012 3' - 328bp Contig7038       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 42 0.06904
whsh_8081_a06r 2012 3' - 327bp Contig7038       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 42 0.0692997
whsh_11001_a07r 2012 3' - 72bp Contig13265            
whsh_16001_a07r 2012 3' - 409bp       vacuolarATPsynthetasesubunitC[Aegilopstauschii] 243 1.55458e-62
whsh_17001_a07r 2012 3' - 522bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 60 1.96189e-07
whsh_2001_a07r 2012 3' - 139bp Contig7359            
whsh_4001_a07r 2012 3' - 59bp Contig5676            
whsh_5001_a07r 2012 3' - 245bp            
whsh_6001_a07r 2012 3' - 322bp Contig11554       Os01g0905700[OryzasativaJaponicaGroup] 45 0.0082168
whsh_1017_a08r 2012 3' - 230bp            
whsh_13017_a08r 2012 3' - 290bp Contig7038       hypotheticalproteinSfri_1740[ShewanellafrigidimarinaNCIMB400] 35 8.54486
whsh_17017_a08r 2012 3' - 232bp Contig16160       light-harvestingcomplexIIaprotein 39 0.345559
whsh_18017_a08r 2012 3' - 31bp            
whsh_3017_a08r 2012 3' - 159bp Contig33274       hypotheticalproteinOsI_26157[OryzasativaIndicaGroup] 37 2.24045
whsh_4017_a08r 2012 3' - 221bp Contig7295       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 86 4.24726e-15
whsh_6017_a08r 2012 3' - 104bp Contig6829            
whsh_7017_a08r 2012 3' - 105bp Contig14850            
whsh_1033_a09r 2012 3' - 210bp Contig6300       predictedprotein[Hordeumvulgaresubsp.vulgare] 75 5.59804e-12
whsh_14033_a09r 2012 3' - 117bp Contig35241            
whsh_15033_a09r 2012 3' - 97bp Contig34858            
whsh_17033_a09r 2012 3' - 203bp Contig2218       ABCtransporterpermease[Bifidobacteriumanimalissubsp.lactisAD011] 39 0.447535
whsh_2033_a09r 2012 3' - 181bp       N-acetylglucosaminerepressor[EscherichiacoliE101] 113 1.84202e-23
whsh_3033_a09r 2012 3' - 544bp Contig7521       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 203 2.37351e-69
whsh_7033_a09r 2012 3' - 168bp Contig5737       conservedhypotheticalprotein[NeosporacaninumLiverpool] 35 6.43667
whsh_8033_a09r 2012 3' - 299bp Contig2640       predictedprotein[Hordeumvulgaresubsp.vulgare] 77 1.93963e-12
whsh_9049_a10r 2012 3' - 532bp Contig7038       putativecarbonicanhydrase[Triticumturgidumsubsp.durumxSecalecereale] 203 2.6806e-50
whsh_10049_a10r 2012 3' - 246bp Contig12852       chlorophylla/bbindingprotein,partial[Loliumperenne] 46 0.00277908
whsh_11049_a10r 2012 3' - 386bp Contig12260       hypotheticalproteinCX157[Homosapiens] 159 2.95094e-37
whsh_12049_a10r 2012 3' - 97bp Contig3004       predictedprotein[Hordeumvulgaresubsp.vulgare] 62 4.87188e-08
whsh_13049_a10r 2012 3' - 429bp Contig12990       predictedprotein[Hordeumvulgaresubsp.vulgare] 173 1.98173e-41
whsh_2049_a10r 2012 3' - 491bp Contig6353       predictedprotein[Hordeumvulgaresubsp.vulgare] 156 2.52005e-36
whsh_3049_a10r 2012 3' - 448bp Contig5738       endotransglucosylase/hydrolaseXTH1[Triticumaestivum] 106 2.99289e-21
whsh_6049_a10r 2012 3' - 226bp Contig6300       mCG1051063[Musmusculus] 41 0.119168
whsh_12065_a11r 2012 3' - 266bp            
whsh_13065_a11r 2012 3' - 109bp Contig457            
whsh_14065_a11r 2012 3' - 579bp Contig5739       predictedprotein[Hordeumvulgaresubsp.vulgare] 139 6.14195e-31
whsh_15065_a11r 2012 3' - 73bp Contig15952            
whsh_17065_a11r 2012 3' - 142bp Contig32716       sucrosetransporterSUT1D[Triticumaestivum] 100 1.60891e-19
whsh_2065_a11r 2012 3' - 416bp Contig6901       ribulose-1,5-bisphosphatecarboxylaseactivase[Triticumaestivum] 203 1.35375e-50
whsh_7065_a11r 2012 3' - 62bp Contig21802            
whsh_8065_a11r 2012 3' - 426bp Contig6477       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 173 1.99013e-41
whsh_10081_a12r 2012 3' - 436bp Contig35241       RecName:Full=PhotosystemIreactioncentersubunitN,chloroplastic;Short=PSI-N;Flags:Precursor 211 6.51087e-53
whsh_12081_a12r 2012 3' - 52bp Contig18716            
whsh_13081_a12r 2012 3' - 376bp       PREDICTED:uncharacterizedproteinLOC100844387[Brachypodiumdistachyon] 156 1.9358e-36
whsh_16081_a12r 2012 3' - 84bp Contig34291            
whsh_17081_a12r 2012 3' - 525bp Contig13996       predictedprotein[Hordeumvulgaresubsp.vulgare] 208 5.96417e-52
whsh_18081_a12r 2012 3' - 130bp Contig7352            
whsh_2081_a12r 2012 3' - 189bp Contig12588            
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