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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 4755
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whr_10002_a01f 2012 5' Root 415bp Contig13181       predictedprotein[Hordeumvulgaresubsp.vulgare] 136 1.80611e-31
whr_11001_a01f 2012 5' Root 462bp       metallothionein[Hordeumvulgare] 151 1.04119e-34
whr_12001_a01f 2012 5' Root 328bp Contig15931       predictedprotein[Hordeumvulgaresubsp.vulgare] 83 2.71251e-14
whr_14001_a01f 2012 5' Root 593bp       PREDICTED:shaggy-relatedproteinkinaseiota-like[Brachypodiumdistachyon] 45 0.0128751
whr_16002_a01f 2012 5' Root 55bp Contig33192       predictedprotein[Hordeumvulgaresubsp.vulgare] 41 0.0854284
whr_18002_a01f 2012 5' Root 505bp Contig3538       predictedprotein[Hordeumvulgaresubsp.vulgare] 230 1.38268e-58
whr_21001_a01f 2012 5' Root 32bp            
whr_6002_a01f 2012 5' Root 334bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 192 4.09955e-47
whr_7002_a01f 2012 5' Root 380bp Contig102       PREDICTED:eukaryotictranslationinitiationfactor3subunitE-likeisoform2[Brachypodiumdistachyon] 211 8.61486e-53
whr_11017_a02f 2012 5' Root 299bp Contig9006       PREDICTED:40SribosomalproteinS20-like[Brachypodiumdistachyon] 154 1.24851e-35
whr_12017_a02f 2012 5' Root 506bp       PREDICTED:uncharacterizedproteinLOC100835029[Brachypodiumdistachyon] 88 1.10834e-15
whr_13018_a02f 2012 5' Root 155bp Contig8492       PREDICTED:14-3-3-likeproteinA-like[Brachypodiumdistachyon] 69 4.08641e-10
whr_14017_a02f 2012 5' Root 434bp Contig30729       Os03g0223400[OryzasativaJaponicaGroup] 164 9.31472e-60
whr_15017_a02f 2012 5' Root 567bp Contig2435       predictedprotein[Hordeumvulgaresubsp.vulgare] 237 1.18426e-60
whr_17017_a02f 2012 5' Root 513bp Contig5031       predictedprotein[Hordeumvulgaresubsp.vulgare] 128 5.61318e-28
whr_24017_a02f 2012 5' Root 521bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 319 2.34327e-85
whr_25018_a02f 2012 5' Root 472bp Contig5978       smalluORF[Leymuschinensis] 101 1.25785e-19
whr_3017_a02f 2012 5' Root 471bp       PREDICTED:uncharacterizedproteinLOC100831405isoform2[Brachypodiumdistachyon] 163 2.06374e-38
whr_4018_a02f 2012 5' Root 541bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 352 3.80589e-95
whr_5018_a02f 2012 5' Root 515bp Contig16699       HvB12D[Hordeumvulgaresubsp.vulgare] 180 2.17621e-43
whr_7018_a02f 2012 5' Root 202bp Contig513       predictedprotein[Hordeumvulgaresubsp.vulgare] 49 0.000331129
whr_19033_a03f 2012 5' Root 630bp       MLA1[Hordeumchilense] 81 1.89076e-13
whr_20033_a03f 2012 5' Root 488bp Contig26640       PREDICTED:uncharacterizedproteinLOC100835539[Brachypodiumdistachyon] 280 1.51814e-73
whr_1034_a03f 2012 5' Root 136bp Contig33097       NACtranscriptionfactor[Hordeumvulgaresubsp.vulgare] 89 2.85764e-16
whr_11033_a03f 2012 5' Root 572bp Contig11598       RRNAintron-encodedhomingendonuclease[Medicagotruncatula] 145 6.23401e-33
whr_12033_a03f 2012 5' Root 656bp Contig23967       RecName:Full=Translationally-controlledtumorproteinhomolog;Short=TCTP 336 3.59155e-90
whr_15033_a03f 2012 5' Root 437bp Contig6681       PREDICTED:uncharacterizedproteinLOC100831128[Brachypodiumdistachyon] 265 4.96213e-69
whr_25034_a03f 2012 5' Root 307bp Contig9024       PREDICTED:40SribosomalproteinS24-2-like[Brachypodiumdistachyon] 191 7.00532e-47
whr_3033_a03f 2012 5' Root 541bp Contig10282       drought-responsivefactor-liketranscriptionfactorDRFL1a[Triticumaestivum] 230 1.27877e-58
whr_4034_a03f 2012 5' Root 522bp       histoneH4[Zeamays] 205 3.86586e-51
whr_5034_a03f 2012 5' Root 515bp Contig4442       PREDICTED:60SribosomalproteinL35-like[Brachypodiumdistachyon] 138 2.1333e-37
whr_6034_a03f 2012 5' Root 360bp Contig4443       PREDICTED:uncharacterizedproteinLOC100834166[Brachypodiumdistachyon] 176 2.32783e-42
whr_7034_a03f 2012 5' Root 331bp Contig9607       predictedprotein[Hordeumvulgaresubsp.vulgare] 194 8.29163e-48
whr_10050_a04f 2012 5' Root 461bp       CBN-TAM-1protein[Caenorhabditisbrenneri] 39 0.338061
whr_19049_a04f 2012 5' Root 449bp       reversiblyglycosylatedpolypeptide[Triticumaestivum] 277 9.80275e-73
whr_20049_a04f 2012 5' Root 410bp Contig12341       predictedprotein[Hordeumvulgaresubsp.vulgare] 270 1.55098e-70
whr_1050_a04f 2012 5' Root 364bp Contig21755       PREDICTED:uncharacterizedproteinLOC100810244[Glycinemax] 129 3.25056e-28
whr_11049_a04f 2012 5' Root 475bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 280 1.1532e-73
whr_12049_a04f 2012 5' Root 427bp Contig15222       PREDICTED:uncharacterizedproteinLOC100832502[Brachypodiumdistachyon] 220 1.85408e-55
whr_14049_a04f 2012 5' Root 483bp Contig16       predictedprotein[Hordeumvulgaresubsp.vulgare] 326 2.36136e-87
whr_16050_a04f 2012 5' Root 507bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 149 4.05106e-34
whr_17049_a04f 2012 5' Root 533bp Contig5031       predictedprotein[Hordeumvulgaresubsp.vulgare] 131 9.91208e-29
whr_2050_a04f 2012 5' Root 400bp Contig876       hypotheticalproteinOsI_25717[OryzasativaIndicaGroup] 267 1.01779e-69
whr_21049_a04f 2012 5' Root 545bp Contig10583       glyceraldehyde-3-phosphatedehydrogenase[Triticumaestivum] 343 1.34725e-92
whr_22050_a04f 2012 5' Root 506bp Contig13166       predictedprotein[Hordeumvulgaresubsp.vulgare] 289 1.92044e-76
whr_23049_a04f 2012 5' Root 544bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 372 3.55395e-101
whr_25050_a04f 2012 5' Root 448bp Contig8139       trehalose-6-phosphatesynthase1[Hordeumvulgaresubsp.vulgare] 276 2.19328e-72
whr_3049_a04f 2012 5' Root 607bp Contig2248       predictedprotein[Hordeumvulgaresubsp.vulgare] 333 2.50294e-89
whr_5050_a04f 2012 5' Root 40bp            
whr_8066_a05f 2012 5' Root 68bp Contig31808       hypotheticalproteinOsI_33412[OryzasativaIndicaGroup] 42 0.0358861
whr_1066_a05f 2012 5' Root 507bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 200 1.17322e-49
whr_11065_a05f 2012 5' Root 423bp Contig8800       predictedprotein[Hordeumvulgaresubsp.vulgare] 269 3.50986e-70
whr_13066_a05f 2012 5' Root 373bp       PREDICTED:leucine-richrepeatextensin-likeprotein6-like[Brachypodiumdistachyon] 228 5.25592e-58
whr_14065_a05f 2012 5' Root 80bp       PREDICTED:leucine-richrepeatextensin-likeprotein6-like[Brachypodiumdistachyon] 53 3.00847e-05
whr_15065_a05f 2012 5' Root 575bp       22.7kDaheat-shockprotein[Aegilopsperegrina] 329 4.04544e-88
whr_16066_a05f 2012 5' Root 548bp Contig1830       Os04g0663300[OryzasativaJaponicaGroup] 244 1.13509e-62
whr_17065_a05f 2012 5' Root 552bp Contig9995       PREDICTED:uncharacterizedproteinLOC100841225[Brachypodiumdistachyon] 320 1.66026e-85
whr_18066_a05f 2012 5' Root 631bp Contig9995       PREDICTED:uncharacterizedproteinLOC100841225[Brachypodiumdistachyon] 359 4.67545e-97
whr_22066_a05f 2012 5' Root 524bp Contig28352       hypotheticalproteinOsJ_09709[OryzasativaJaponicaGroup] 183 2.68341e-44
whr_23065_a05f 2012 5' Root 429bp Contig1238       PREDICTED:uncharacterizedproteinLOC100821711[Brachypodiumdistachyon] 211 8.61255e-53
whr_7066_a05f 2012 5' Root 152bp Contig17765       cyc07[Triticumaestivum] 105 5.16154e-21
whr_9065_a05f 2012 5' Root 584bp Contig11867       PREDICTED:uncharacterizedproteinLOC100835375[Brachypodiumdistachyon] 230 1.57691e-58
whr_19081_a06f 2012 5' Root 498bp Contig11598       PREDICTED:uncharacterizedproteinLOC100810244[Glycinemax] 129 3.26878e-28
whr_1082_a06f 2012 5' Root 595bp Contig23854       predictedprotein[Hordeumvulgaresubsp.vulgare] 354 7.59669e-96
whr_12081_a06f 2012 5' Root 500bp Contig4608       predictedprotein[Hordeumvulgaresubsp.vulgare] 227 2.25879e-61
whr_13082_a06f 2012 5' Root 470bp       HSP70,partial[Triticumaestivum] 303 1.66878e-80
whr_14081_a06f 2012 5' Root 503bp Contig10402       predictedprotein[Hordeumvulgaresubsp.vulgare] 246 1.8178e-63
whr_16082_a06f 2012 5' Root 534bp Contig12012       H-protein,partial[Triticumaestivum] 232 3.15916e-59
whr_2082_a06f 2012 5' Root 493bp Contig5613       PREDICTED:cationtransportregulator-likeprotein2-like[Brachypodiumdistachyon] 289 2.49099e-76
whr_21081_a06f 2012 5' Root 556bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 238 6.47759e-61
whr_3081_a06f 2012 5' Root 545bp       PREDICTED:uncharacterizedproteinLOC100836637isoform1[Brachypodiumdistachyon] 224 1.55582e-56
whr_6082_a06f 2012 5' Root 218bp Contig2264       PREDICTED:60SribosomalproteinL9-likeisoform1[Brachypodiumdistachyon] 97 1.36198e-18
whr_9081_a06f 2012 5' Root 40bp       hypotheticalproteinVOLCADRAFT_96079[Volvoxcarterif.nagariensis] 28 1.47802
whr_10002_a07f 2012 5' Root 200bp       Nucleoporin-likeprotein[OryzasativaJaponicaGroup] 114 1.09828e-23
whr_20001_a07f 2012 5' Root 400bp Contig4011       smalluORF[Leymuschinensis] 101 1.26159e-19
whr_1002_a07f 2012 5' Root 449bp       fasciclin-likeproteinFLA25[Triticumaestivum] 301 8.2793e-80
whr_15001_a07f 2012 5' Root 536bp Contig10781       hypotheticalproteinCX157[Homosapiens] 241 9.07541e-62
whr_16002_a07f 2012 5' Root 371bp       PREDICTED:heatshockcognate70kDaprotein1-likeisoform1[Brachypodiumdistachyon] 227 9.0007e-58
whr_18002_a07f 2012 5' Root 581bp Contig4113       mitochondrialATPsynthaseprecursor[Triticumaestivum] 320 1.94398e-85
whr_2002_a07f 2012 5' Root 227bp       PREDICTED:phenylalanineammonia-lyase-like[Brachypodiumdistachyon] 129 1.65053e-29
whr_22002_a07f 2012 5' Root 613bp Contig4444       Os01g0816400[OryzasativaJaponicaGroup] 378 6.88438e-103
whr_4002_a07f 2012 5' Root 143bp Contig33988       PREDICTED:dihydrolipoyllysine-residueacetyltransferasecomponent1ofpyruvatedehydrogenasecomplex,mitochondrial-like[Brachypodiumdistachyon] 89 2.84e-16
whr_7002_a07f 2012 5' Root 31bp            
whr_10018_a08f 2012 5' Root 445bp       PREDICTED:E3ubiquitin-proteinligaseAt3g02290-like[Brachypodiumdistachyon] 226 2.61412e-57
whr_19017_a08f 2012 5' Root 539bp Contig4445       predictedprotein[Hordeumvulgaresubsp.vulgare] 307 1.0531e-81
whr_11017_a08f 2012 5' Root 342bp Contig9619       predictedprotein[Hordeumvulgaresubsp.vulgare] 211 8.46365e-53
whr_12017_a08f 2012 5' Root 525bp       uncharacterizedproteinLOC100381281[Zeamays] 335 3.23492e-90
whr_13018_a08f 2012 5' Root 168bp Contig30396       HSP70,partial[Triticumaestivum] 111 9.23009e-23
whr_15017_a08f 2012 5' Root 483bp Contig1903       predictedprotein[Hordeumvulgaresubsp.vulgare] 237 1.10455e-60
whr_16018_a08f 2012 5' Root 376bp Contig4446       predictedprotein[Hordeumvulgaresubsp.vulgare] 224 1.28946e-56
whr_18018_a08f 2012 5' Root 535bp Contig4447       PREDICTED:peroxidase2-like[Brachypodiumdistachyon] 219 4.82337e-55
whr_23017_a08f 2012 5' Root 511bp       putativehelicase[OryzasativaJaponicaGroup] 119 3.4054e-25
whr_24017_a08f 2012 5' Root 402bp Contig7708       predictedprotein[Hordeumvulgaresubsp.vulgare] 284 8.04571e-75
whr_3017_a08f 2012 5' Root 516bp Contig32859       predictedprotein[Hordeumvulgaresubsp.vulgare] 308 4.05684e-82
whr_4018_a08f 2012 5' Root 99bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 67 1.97207e-09
whr_6018_a08f 2012 5' Root 337bp       S-adenosyl-L-methioninedecarboxylase2[Leymuschinensis] 198 4.3634e-49
whr_10034_a09f 2012 5' Root 453bp       predictedprotein[Hordeumvulgaresubsp.vulgare] 171 7.54284e-41
whr_19033_a09f 2012 5' Root 408bp Contig4241       predictedprotein[Hordeumvulgaresubsp.vulgare] 203 1.37068e-50
whr_1034_a09f 2012 5' Root 558bp Contig5328       predictedprotein[Hordeumvulgaresubsp.vulgare] 334 8.84068e-90
whr_13034_a09f 2012 5' Root 462bp Contig6257       PREDICTED:GTP-bindingnuclearproteinRan-3-like[Brachypodiumdistachyon] 305 3.39238e-81
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